BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473267
Length=2144
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30440.1 | Symbols: | Phototropic-responsive NPH3 family pr... 3354 0.0
> AT1G30440.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr1:10759475-10762394 FORWARD LENGTH=2193
Length=2193
Score = 3354 bits (1816), Expect = 0.0
Identities = 1974/2052 (96%), Gaps = 4/2052 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTGCATGAAGCTGGGATCCAAATCTGATGCTTTCCAGAGACAAGGCCAGGCTTGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTGCATGAAGCTGGGATCCAAATCTGATGCTTTCCAGAGACAAGGCCAGGCTTGG 60
Query 61 TTTTGCACAACTGGACTTCCAAGTGATATTGTCGTTGAAGTTGGGGAGATGTCTTTTCAT 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTTGCACAACTGGACTTCCTAGTGATATTGTCGTTGAAGTTGGGGAGATGTCTTTTCAT 120
Query 121 CTCCACAAGTTTCCCTTGCTCTCTAGAAGTGGAGTCATGGAAAGAAGGATTGCGGAGGCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 121 CTCCACAAGTTTCCCTTGCTCTCTAGAAGTGGAGTCATGGAAAGAAGGATTGCAGAAGCA 180
Query 181 TCAAAAGAAGGGGATGATAAATGTCTCATTGAAATTTCTGATCTTCCTGGCGGAGACAAA 240
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 181 TCAAAAGAAGGCGATGATAAATGTCTCATTGAAATCTCTGATCTTCCTGGTGGAGACAAA 240
Query 241 ACGTTTGAACTAGTCGCCAAGTTCTGCTATGGTGTGAAGCTCGAACTCACTGCTTCTAAC 300
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 ACGTTTGAACTAGTCGCTAAGTTCTGCTATGGTGTGAAGCTTGAACTCACTGCTTCTAAC 300
Query 301 GTTGTATATCTCAGATGCGCTGCTGAGCATCTCGAAATGACTGAAGATTATGGGGAAGGA 360
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 GTTGTATATCTCAGATGCGCTGCTGAGCATCTCGAAATGACTGAAGAACATGGGGAAGGA 360
Query 361 AATCTTATATCTCAAACTGAAACATTTTTCAATCAAGTGGTCCTCAAAAGCTGGAAAGAC 420
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 AATCTTATTTCTCAAACTGAAACATTTTTCAATCAAGTAGTCCTCAAAAGCTGGAAAGAT 420
Query 421 TCAATAAAAGCGCTTCAAAGCTGCGATGAGGTCCTCGAGTATGCTGATCAATTGAACATT 480
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 421 TCAATAAAAGCGCTTCATAGCTGCGATGAGGTCCTCGAGTATGCTGATGAATTGAACATT 480
Query 481 ACCAAGAAATGCATTGAGTCACTAGCCATGAGAGCATCTACAGACCCAAACTTGTTTGGA 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 ACCAAGAAATGCATTGAGTCACTAGCCATGAGAGCATCGACAGACCCAAACTTGTTTGGA 540
Query 541 TGGCCAGTTGTGGAGCATGGTGGGCCCATGCAAAGTCCTGGTGGCAGTGTTTTATGGAAT 600
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 541 TGGCCAGTTGTGGAGCATGGTGGGCCCATGCAGAGTCCAGGTGGCAGTGTTTTATGGAAT 600
Query 601 GGGATAAGCACCGGGGCTAGACCTAAACATACTAGTTCAGATTGGTGGTACGAGGATGCG 660
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 601 GGGATAAGCACCGGGGCTAGACCTAAACATACTAGTTCAGACTGGTGGTACGAGGATGCA 660
Query 661 TCGATGCTTAGTTTTCCTCTTTTTAAGAGACTCATCACGGTCATGGACTCCCGAGGCATA 720
|||||||| |||||||| |||||||||||||| |||||||| ||||| ||||| |||||
Sbjct 661 TCGATGCTAAGTTTTCCCCTTTTTAAGAGACTTATCACGGTGATGGAGTCCCGCGGCATT 720
Query 721 AGAGAAGACATCATTGCTGGTTCCCTAACCTATTACACAAGAAAACACTTGCCTGGCTTA 780
|||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 721 AGAGAAGACATCATCGCTGGCTCCCTAACCTATTACACACGAAAACACTTGCCTGGCTTA 780
Query 781 AAAAGACGACGTGGTGGACCTGAATCTAGTGGTCGTTTCAGCACTCCTTTGGGCTCAGGG 840
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 781 AAAAGACGACGTGGTGGACCTGAATCTAGTGGTCGTTTCAGCACACCTTTGGGCTCAGGG 840
Query 841 AATGTACTGTCCGAGGAAGAGCAGAAGAACTTGCTTGAAGAGATCCAGGAGCTTCTCCGT 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 841 AATGTACTGTCCGAGGAAGAGCAGAAGAACTTGCTTGAAGAGATCCAGGAGCTTCTTCGT 900
Query 901 ATGCAAAAAGGTTTAGTTCCAACCAAGTTTTTCGTCGACATGCTTCGAATCGCCAAGATT 960
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 ATGCAAAAAGGTTTAGTTCCAACCAAGTTTTTCGTTGACATGCTTCGAATCGCCAAGATT 960
Query 961 TTGAAAGCAAGTCCGGATTGCATAGCGAATTTAGAGAAGAGGATAGGAATGCAGCTTGAC 1020
|| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 961 TTAAAAGCAAGTCCGGATTGCATAGCCAATTTGGAGAAGAGGATAGGGATGCAGCTTGAC 1020
Query 1021 CAGGCTGCGTTGGAAGATCTTGTAATGCCTAGCTTTTCTCATACTATGGAGACTCTGTAC 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1021 CAGGCTGCGTTGGAAGATCTTGTAATGCCTAGCTTTTCTCATACTATGGAGACCCTATAC 1080
Query 1081 GATGTTGACTCTGTGCAAAGGATCTTGGAGCATTTTCTTGGGACAGATCAGATTATGCCT 1140
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1081 GATGTTGACTCTGTGCAAAGGATCTTGGACCATTTTCTTGGGACAGATCAGATTATGCCT 1140
Query 1141 GGTGGGGTTGGCTCTCCTTGTTCTTCTGTAGATGACGGGAATTTAATCGGATCTCCACAG 1200
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1141 GGTGGGGTTGGCTCTCCTTGTTCTTCAGTAGATGACGGGAATTTAATCGGATCCCCACAG 1200
Query 1201 TCAATAACACCAATGACAGCGGTTGCAAAGCTGATTGATGGGTATCTTGCTGAAGTTGCT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TCAATAACACCAATGACAGCGGTTGCAAAGCTGATTGATGGGTATCTTGCTGAAGTTGCT 1260
Query 1261 CCTGATGTCAATCTTAAGCTTCCAAAGTTCCAAGCTTTAGCTGCTTCTGTTCCTGAATAT 1320
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1261 CCTGATGTCAATCTTAAGCTTCCAAAGTTCCAAGCTTTAGCTGCTTCTATTCCTGAATAC 1320
Query 1321 GCCAGACTCTTAGATGACGGACTCTATCGTGCAATAGACATTTATCTAAAGCATCATCCA 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GCCAGACTCTTAGATGACGGACTCTATCGTGCAATAGACATTTATCTAAAGCATCATCCA 1380
Query 1381 TGGTTGGCGGAAACAGAAAGAGAGAATCTTTGCAGGTTGTTAGATTGTCAGAAACTCTCT 1440
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1381 TGGTTGGCGGAAACAGAAAGAGAGAATCTGTGCCGGTTGTTAGATTGTCAGAAACTCTCT 1440
Query 1441 TTAGAAGCTTGCACACACGTGGCCCAGAACGAGAGATTACCGCTAAGAATAATCGTGCAA 1500
||||||||||| ||||| | ||| |||||||||||||||||||||||||||||||| |||
Sbjct 1441 TTAGAAGCTTGTACACATGCGGCGCAGAACGAGAGATTACCGCTAAGAATAATCGTCCAA 1500
Query 1501 GTGCTCTTCTTTGAGCAGCTTCAGCTCAGAACATCTGTAGCTGGATGCTTCCTGGTTTCA 1560
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 1501 GTGCTCTTCTTTGAGCAGCTACAGCTCAGAACCTCTGTAGCTGGATGCTTCCTGGTCTCA 1560
Query 1561 GACAACCTCGATGGCGGATCAAGACAGTTAAGAAGCggaggatttgtaggaggatcaacc 1620
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
Sbjct 1561 GACAACCTCGATGGCGGATCAAGACAGTTAAGAAGCGGAGGATATGTAGGAGGACCAAAC 1620
Query 1621 gaaggagg---aggaggaggaggaTGGGCAACCGCAGTAAGAGAGAATCAAGTCCTGAAA 1677
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1621 GAAGGAGGCGGAGGAGGAGGAGGATGGGCAACCGCGGTAAGAGAGAATCAAGTCCTGAAA 1680
Query 1678 GTTGGAATGGACAGTATGAGGATGCGAGTTTGTGAGTTAGAGAAAGAATGTTCCAACATG 1737
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1681 GTTGGAATGGACAGTATGAGAATGCGAGTTTGTGAGTTAGAGAAAGAATGTTCCAACATG 1740
Query 1738 AGACAAGAGATTGAGAAGCTCGGTAAGACGACAAAAGGTGGTGGTTCTGCAAGCAATGGA 1797
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 AGACAAGAGATTGAGAAACTCGGTAAGACGACAAAAGGTGGTGGTTCTGCAAGCAATGGA 1800
Query 1798 GGCGGTAGCAAAACATGGGAAAACGTTTCTAAGAAACTCGGGTTCGGTTTTAAGCTGAAG 1857
| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 GTCGGTAGCAAGACTTGGGAAAACGTTTCTAAGAAACTCGGGTTCGGTTTTAAGCTGAAG 1860
Query 1858 TCACATCAAATGTGCAGTGCTCAGGAAGGATCAGTGTCTAAGTCTAACAACGAGAATGTG 1917
|| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1861 TCGCATCAAATGTGCAGTGCTCAGGAAGGTTCTGTGTCTAAGTCTAACAACGAGAATGTG 1920
Query 1918 AAGAAAGAGAAGCTGAAGGATGTTAAAGAACGTCGTGGGAAGCATAAGACAGCTTCGAGC 1977
|||| ||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1921 AAGATAGAGAAGCTAAAGGATGTTAAAGAGCGTCGTGGGAAGCATAAGAAAGCTTCGAGC 1980
Query 1978 ATTAGTTCTGAGAGGTGATTATGGTAAATTTCCACGGTTCAAATGTCCAGTTTCAGTGT- 2036
|||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||
Sbjct 1981 ATTAGTTCTGAGAGGTGAAAATGGTAAATTTCCACGGTTCAAATGTCCAGTTACTGTGTG 2040
Query 2037 TTTGGACATTGT 2048
||||||||||||
Sbjct 2041 TTTGGACATTGT 2052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106324754310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5