BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473272
Length=2954
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30470.1 | Symbols: | SIT4 phosphatase-associated family pr... 3969 0.0
> AT1G30470.1 | Symbols: | SIT4 phosphatase-associated family
protein | chr1:10779171-10786666 FORWARD LENGTH=2939
Length=2939
Score = 3969 bits (2149), Expect = 0.0
Identities = 2398/2517 (95%), Gaps = 22/2517 (1%)
Strand=Plus/Plus
Query 1 AAGAAGCACTACCCCTCCCGCAATTGAAGGTTCTCTTCGTCGCTCACATTCC-ATCTCTT 59
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 11 AAGAAGCACTACCCCTCCCGCAATTGAAGGTTCTCTTCGTCGCTCACA-TCCAATCTCTA 69
Query 60 TCGATCTCAGATTCCAATTCCTGCGAATTTTTTCTTCCCATAGAGATTACAGATTCTAGG 119
||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 70 TCGATCTCAGATTCCAATTTCTGCGAATATTTTCTTCCCAGAGAGATTACAGATTCTAGG 129
Query 120 GTTTCG-ATAGCTTCTTTCCAATCGAGTTTTCTT-CTTTTATCTCT-GGGACGAAATTTC 176
|||||| |||| |||||||||||| ||| ||||| ||||| | ||| ||| |||||||||
Sbjct 130 GTTTCGAATAG-TTCTTTCCAATCTAGTCTTCTTCCTTTTGTTTCTCGGG-CGAAATTTC 187
Query 177 CCTTAGGGTTTCGAAGATCCGAATCTGTGGACGGAGGCAATTCGACGtttttttCTTTGA 236
|||||||||||||||||||||||||||||||||||| |||||||||| | ||| ||||
Sbjct 188 CCTTAGGGTTTCGAAGATCCGAATCTGTGGACGGAGACAATTCGACG---TCTTC-TTGA 243
Query 237 GCTGCAAAGATGTTCTGGCGAATGGCGGGATTGTCAACGGCGTCTGCCGTTGAAGCAATT 296
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 244 GCTGCAAAGATGTTCTGGCGAATGGCTGGATTATCAACGGCGTCTGCCGTTGAAGCAATT 303
Query 297 TTGGATAAAGATAGTTTCACATTAGAGGACCTTCTTGACGAGGATGAAATTATTCAAGAA 356
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 304 TTGGATAAAGATAGTTTCACATTAGAGGATCTTCTTGACGAGGATGAAATTATTCAAGAA 363
Query 357 TGCAAAGCCCTGAACGGACGACTCTTAAATTTCTTGAGAGAAAGAGTGCAAGTGGAACAA 416
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 364 TGCAAAGCCCTGAATGGACGACTCTTAAATTTCTTGAGAGAAAAAGTGCAAGTGGAACAA 423
Query 417 CTTATTAGGTACATAATAGAGGAGCCTCTTGAGGATGTGGAAAAGAAGCGAACATTCAAG 476
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 424 CTTATTAGGTACATAATAGAGGAGCCTCTTGAGGACGTGGAAAAGAAGCGAACATTCAAG 483
Query 477 TTTCCTTTCATTGCCTGTGAAATTTTCACATGTGAGATTGAAATGATACTGAAAACACTA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 TTTCCTTTCATTGCCTGTGAAATTTTCACATGTGAGATTGAAATGATACTGAAAACACTA 543
Query 537 GTAGAGGATGAGGAGTTGATGCTAGTGCTGTTTTCGTTCTTAGAAGCTAAAGAAACCCAT 596
||||| ||||||||||||||| || | |||||||||| || ||||||||||||||||||
Sbjct 544 GTAGAAGATGAGGAGTTGATGTTATTATTGTTTTCGTTTTTGGAAGCTAAAGAAACCCAT 603
Query 597 AACTCATTGCTTGCCGGGTACTTCAGTAAGGTTGTCATTTGTCTGCTGGTGCGGAAGACG 656
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 604 AACTCATTACTTGCCGGGTACTTCAGCAAGGTTGTCATTTGTCTGCTGGTGCGGAAGACG 663
Query 657 ATCCCTTTCATGCAATTTATAAAAGATCATCAAGAAATACTGAAGCAGCTTGTTGATTTG 716
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 664 ATCCCATTCATGCAATTTATAAAAGATCATCAAGAAATTCTGAAGCAGCTTGTTGATTTG 723
Query 717 ATTGGTATTACATCTATAATGGAGGTTTTAAAACGTCTGGTTGGTACTGATGAGCACCTA 776
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 724 ATTGGTATTACATCTATTATGGAGGTTTTAAAACGCCTGGTTGGTACTGATGAACACCTA 783
Query 777 TATTCAAACTACACAAGTGCAATGCAGTGGGTAGAGGATACAGATGTGTTAGAGATGATT 836
||||||||||| |||||||||||||||||| |||| ||||| ||||| ||||||||||||
Sbjct 784 TATTCAAACTATACAAGTGCAATGCAGTGGATAGAAGATACGGATGTTTTAGAGATGATT 843
Query 837 GTGGACAAGTTTGGCTCCTCGGATTCTCCCGAGGTACATGCCAATGCAGCTGAAATTCTT 896
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 844 GTGGACAAGTTTGGCTCTTCGGAGTCTCCCGAGGTACATGCCAATGCAGCTGAAATTCTG 903
Query 897 TGTACTGTAGCAAGATACGCACCCCCTGGTCTTGCTACAAAACTTTCCAGCCCCAGTTGT 956
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 904 TGTACTGTTGCAAGATACGCACCCCCTGGTCTTGCTACAAAACTTTCCAGCCCCAGCTGC 963
Query 957 ACTGGAAGGTTGTTAAAACATACTTTAGAAGATTCACGGCCTAAGTCTGTTCTGGTTAAT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 ACTGGAAGGTTGTTAAAACATACTTTAGAAGATTCACGGCCTAAGTCTGTTCTGGTTAAT 1023
Query 1017 TCATTATCTGTATGCATATCTCTGCTGGATCCTAAGAGGTTTACATTGGGGACTTATCAT 1076
|| |||||||||||||||||||| || |||||||||||||||||| |||| |||||||||
Sbjct 1024 TCGTTATCTGTATGCATATCTCTACTCGATCCTAAGAGGTTTACACTGGGCACTTATCAT 1083
Query 1077 ATATATGGCCGTCAA-TTAACCCATGGAAGCATGGTAACTAATCCTGAGACAGTGGAGGG 1135
|||||||| |||||| || |||||||||||||||||||||||||| |||||||| |||||
Sbjct 1084 ATATATGGTCGTCAACTT-ACCCATGGAAGCATGGTAACTAATCCCGAGACAGTTGAGGG 1142
Query 1136 AATGCTTGGAAGCCTAGGTGATTTACTTATGCTTTTGAATGTTTCATCTGCTGAGGATGT 1195
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1143 AATGCTTGGAAGCCTAGGTGATTTACTTATGCTTTTGAATGTTTCATCTGCTGAGGGTGT 1202
Query 1196 TTTGTTGACAACGTATGGCAAGTTGCAACCACCTCTTGGAAAACACAGATTAAAGATTGT 1255
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 TTTGTTAACAACGTATGGCAAGTTGCAACCACCTCTTGGAAAACACAGATTAAAGATTGT 1262
Query 1256 AGAGTTTATTTCAGTCTTACTCACTGTCGGAAGTGAAGCAGCAGAGAAGGAAGTAATTCG 1315
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1263 AGAGTTTATTTCAGTCTTGCTCACTGTCGGTAGTGAAGCAGCAGAGAAGGAAGTAATTCG 1322
Query 1316 ACTTGGAGCGGTGAAAAGAGTGTTGGACTTGTTCTTCGAGTATCCCTACAACAATTTTTT 1375
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1323 ACTTGGAGCGGTGAAAAGAGTGTTGGACTTGTTCTTTGAGTATCCCTACAACAATTTTTT 1382
Query 1376 GCATCACCATGTGGAGAATGTAATTCTCTCATGTTTGGAGAGCAAAAACTCTCAACTTGT 1435
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1383 GCATCACCATGTGGAGAATGTAATTCTCTCATGTATGGAGAGCAAAAACTCTCAACTTGT 1442
Query 1436 TGACCATCTTTTCAGTGAGTGCAATCTTATTGGGAGTATACTAGAGGCGGAAAAAGACTC 1495
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1443 TGACCATCTTCTCAGTGAGTGCAATCTTATTGGGAGTATACTAGAGGCGGAAAAGGACTC 1502
Query 1496 CACATTAACTGCTAGTGATTCTAATAAGCTTCAGCCGACAGTCCCTGCAGAGGGTAGAAA 1555
||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| |||
Sbjct 1503 CACATTAACTGCTGGTGATTCTGATAAGCTTCAGCCTACAGTCCCTGCAGAGGGTAAAAA 1562
Query 1556 GCCACTCAGGATTGGAAACATTGGTCATATGACTCGTATCTCGAACAAACTTCTTCAGCT 1615
||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||
Sbjct 1563 GCCACTCAGGATTGGAAACATCGGTCATTTGACTCGTATCTCCAACAAACTTCTTCAGCT 1622
Query 1616 AGCTAATAGCAATGTCGAAATTCAGTCACATTTGCAGGAAAATAGCAAATGGGTGGACTG 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623 AGCTAATAGCAATGTCGAAATTCAGTCACATTTGCAGGAAAATAGCAAATGGGTGGACTG 1682
Query 1676 GCAGACAGATGTATTGTCAAAGCGTAATACATTGGAAAATGTCTACTCTTGGGCCTGCGG 1735
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1683 GCAGACAGATGTCTTGTCGAAGCGTAATACATTGGAAAATGTCTACTCTTGGGCCTGCGG 1742
Query 1736 GAGGCCAACTTCACTCCATGATCGTAGTAGAGATAGTGATGATGATGATTACCACGATAG 1795
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1743 GAGGCCTACTTCACTCCATGATCGTAGTAGAGATAGTGATGATGATGATTACCACGATAG 1802
Query 1796 AGATTATGATGTGGCAGCCCTAGCAAACAATTTGAGCCAGGCCTTTCGGTATGGAATTTA 1855
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1803 AGATTATGATGTGGCAGCCCTAGCAAACAATTTGAGCCAGGCTTTTCGATATGGAATTTA 1862
Query 1856 CAGCAATGATGACATGGATGAGGCCCAAGGCTCTATGGAACGTGATGATGAGGATGTCTA 1915
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1863 CAGCAATGATGACATGGATGAGGCCCAAGGCTCTATGGAACGCGATGATGAGGATGTCTA 1922
Query 1916 CTTTGATGATGAATCTGCAGAAGTCGTCATATCTTCCTTGCGCCTTGGAGATGATCAGGA 1975
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1923 CTTTGATGATGAATCTGCAGAAGTCGTCATATCCTCCTTGCGCCTTGGAGATGACCAGGA 1982
Query 1976 GAGCGATTCTCTCTTCACAAATTCAAACTGGTTTGCATTCGATGATGATAAAGCTGCAAA 2035
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1983 GAGTGATTCTCTCTTCACAAATTCAAACTGGTTCGCATTCGATGATGATAAAGCTGCGAA 2042
Query 2036 TGAGCGCTCAATGAGCTCAGCTACTTCCCCTTCACCCAATGCTGATGGAGATGGTGACGA 2095
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 2043 TGAGCGCTCAATGACCTCAGCTGCTTCCCCTTCACCCAATGCTGATGGAGATGGTGAAGA 2102
Query 2096 TGATGATG-T--CGTCATAGGCGAAGCCGATGAATTCAACGACACTGCAGCTTCTTCCCC 2152
|||||||| | ||||||||||||||||||||||||||||| ||||||||| ||||| ||
Sbjct 2103 TGATGATGATGTCGTCATAGGCGAAGCCGATGAATTCAACGCCACTGCAGCCTCTTCTCC 2162
Query 2153 ACCTGGTGATATGGAAACAGAAGATTCTACATCAAAGCATCCTTCTGAAAATCCGAGTGA 2212
||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 2163 ACCTGTTGATATGGAAACAGAGGATTCTACATCAAAGCATCCTTCTGAAAACCCGAGTGA 2222
Query 2213 ACCAGAACCTGAAAAATCACCTGCTTGGGTTGAGTGGAGAGAGACCTCTGAGTCCACTGC 2272
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2223 ACCAGAACCTGAAAAGTCACCTGCTTGGGTTGAGTGGAGAGAGACCTCTGAGTCCACCGC 2282
Query 2273 ACC---TTCTTCCAACCCAGATGAAACTACCATATTGTCCAATGGTGATGTTCAAATTGA 2329
||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 2283 ACCACCTTCTTCCAACCCAGAGGAGACTACCATATTGTCCAATGGTGATGTTCAAATTGA 2342
Query 2330 GAAAGAGGATAATGATGATGATGAT-AC-C-GATAACAAAAGTGCAGTGAAAACACCAGG 2386
||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 2343 GAAAGAGGATAATGATGATGATGATGATACTGATAACAAAAGTGCAGTGAAAACACCAGG 2402
Query 2387 TGTATCTGGCGATGAAACCACAGAGAAGTTACCAGATGAGAGTGGTGTTGAACCCACTGA 2446
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2403 TGTACCTGGCGATGAAACCACAGAGAAGTTACCAGATGAGAGTGGTGTTGAACCCACTGA 2462
Query 2447 GAGCTCATCAAAAGCGAGTGGCATTGAACCCACTGAGATCTCACCCAAAGCTAGTGG 2503
|| |||| ||||||| ||||||||||||||||| |||| |||||| ||||| |||||
Sbjct 2463 GAACTCACCAAAAGCTAGTGGCATTGAACCCACAGAGAGCTCACCAAAAGCGAGTGG 2519
Score = 760 bits (411), Expect = 0.0
Identities = 471/499 (94%), Gaps = 7/499 (1%)
Strand=Plus/Plus
Query 2462 GAGTGGCATTGAACCCACTGAGATCTCACCCAAAGCTAGTGGCATTGAACCCACGGAGAC 2521
|||||| ||||||||||||||| |||||| ||||||||||||||||||||||| ||||
Sbjct 2442 GAGTGGTGTTGAACCCACTGAGAACTCACCAAAAGCTAGTGGCATTGAACCCACAGAGAG 2501
Query 2522 CTCACCTAAAGCTAGTGGAGCTGAAGTAACT-GAGAACTTGAGAGATTACGATCCTGCTG 2580
|||||| ||||| |||||||||||||||||| || ||||||||||||| |||||||||||
Sbjct 2502 CTCACCAAAAGCGAGTGGAGCTGAAGTAACTGGA-AACTTGAGAGATTCCGATCCTGCTG 2560
Query 2581 AATCGCATGCAGATGCGAAAAGCTCTGAACCTGAAAGCCCCCATGAGACAAAAGAAACAG 2640
|||| ||||| ||||| ||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 2561 AATCTCATGCGGATGCTAAAAGCTCTGAACCTGAAAGCCCTCATGGGACAAAAGAAACAG 2620
Query 2641 AGGTTGCAGCAGAAGCAGATACCAAAGAGAAAGAAGAAGCTGTGAAGGAACCAGAGAAGG 2700
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 2621 AGGTTGCAGCAGAAGCAGATACCAAAGAGACCGAAGAGGCTGTGAAGGAACCAGAGAAGG 2680
Query 2701 TAGTGTGAGCTTTTTACTTAACCGGGGGTCTCTTTGACTGATAAAACAAAATTTCTTCTG 2760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2681 TAGTGTGAGCTTTTTACTTAACCGGGGGTCTCTTTGACTGATAAAACAAAATTTCTTCTG 2740
Query 2761 GTTTAGTTTGATTAAGGGCTTTGTCTGTTTTGGGTACAATTTATTATTCt-tttttt-CT 2818
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 2741 GTTTAGTTTGATTAAGGGCTTTGTCTGTTTTGGGTACAATTTATTATTCTATTTTTTTCT 2800
Query 2819 TTTCCTTGTTTGTTTACTTCATTGTATCATCTCCAAATCCGGTATTTTTTATTCAACATT 2878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2801 TTTCCTTGTTTGTTTACTTCATTGTATCATCTCCAAATCCGGTATTTTTTATTCAACATT 2860
Query 2879 ATTGTCGTCCAAAAT--GTTAGTAGCTTTTCATATCT-ATCAGTATAATCTTTTACCTCA 2935
||||||| ||||||| |||| ||||||||||||| | || |||||||||||||||||||
Sbjct 2861 ATTGTCGACCAAAATTTGTTACTAGCTTTTCATATTTTATTAGTATAATCTTTTACCTCA 2920
Query 2936 GCTAGACTCATCAAGTGTC 2954
|||||||||||||||||||
Sbjct 2921 GCTAGACTCATCAAGTGTC 2939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 146838642161
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5