BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473274
Length=773
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30475.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 872 0.0
AT1G30473.1 | Symbols: | Heavy metal transport/detoxification ... 416 1e-115
> AT1G30475.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: embryo defective 1303 (TAIR:AT1G56200.1); Has 148 Blast
hits to 148 proteins in 34 species: Archae - 0; Bacteria
- 14; Metazoa - 63; Fungi - 0; Plants - 62; Viruses - 0; Other
Eukaryotes - 9 (source: NCBI BLink). | chr1:10788226-10789943
REVERSE LENGTH=851
Length=851
Score = 872 bits (472), Expect = 0.0
Identities = 708/811 (87%), Gaps = 59/811 (7%)
Strand=Plus/Plus
Query 2 CTTCGAGGAGCAACC-AAATCCCAGATTTTT-CTCGACAAAAAATCTACCTGCTTTTGAT 59
||||||||||||||| |||||||| |||||| ||||||||||||||||||||| ||||||
Sbjct 13 CTTCGAGGAGCAACCAAAATCCCAAATTTTTCCTCGACAAAAAATCTACCTGC-TTTGAT 71
Query 60 CCAAATCTTTATGGTTATGCCGGTAATGAATCCATCATTGTGTATTGGTACACAACCATC 119
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 72 CCAAATCTCTATGGTTATGCCGGTAATGAATCCATCATTGTGTATTGGTACACAAACATC 131
Query 120 GCTGTACCTCGCTCCTCGTG-GAATTCATCATTTTACGACTAATGGAAACTCTCATAGGC 178
| |||||||||||||||||| ||| ||| |||||||| ||||||||||||||| ||||
Sbjct 132 GGTGTACCTCGCTCCTCGTGAGAA---ATC-TTTTACGAGTAATGGAAACTCTCAAAGGC 187
Query 179 GTTCTCCTTCAAGCGTTTCTATGCAACGTCAGCGGTCGAGCCAGAGTAAATTTCCTTCTC 238
||| |||| ||||||||||||||||||| |||| | |||||| |||||||| |||||||
Sbjct 188 GTTATCCTACAAGCGTTTCTATGCAACGCCAGCCTTGGAGCCAAAGTAAATTCCCTTCTC 247
Query 239 TCCAGGCTGTTGGAACGCGCCCAGTGCAATCAGTTGTTGTCTCTAAGGATAAACGATCTG 298
|||| || | | |||||||| ||||||| ||||||||| ||||| || | |
Sbjct 248 TCCA-------GG-A--TG--CAGTGCAACCAGTTGTCGTCTCTAAGAATAAAAGACCAG 295
Query 299 TCTTTGCGTGTAACTCTGCTCTGAATTCAAAATGCAGTCAAGGGCAAACACAGACCGTTA 358
||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 296 TCTTTGCATGTAACTCTGCGCTGAATTCAAAATGCAGTCAAGGACAAACACAGACCGTTA 355
Query 359 CGCGGAAATCACCAACAATCACACAAGTTCCTACTCATGGAAAAGAGAAATCACCAAAGC 418
| ||| ||||||||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 356 CACGGCAATCACCAACAATCACACAAGCTCCTACTCATGGAAAAGTTAAATCCCCAAAGC 415
Query 419 TTGATGACGGTGGAAACGGATTCCCGCCTCGAGATGAtggtggtggtggtggtggcggag 478
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 416 TTGATGACGGTGGAAACGGGTTCCCACCTCGGGATGATGGTGGTGGTGGTGGTGGCGGAG 475
Query 479 gtggtggAGGGAGCTCTTCAGGTGGATTCTTCCTCTTCGGGTTTCTTTTGTTCATGGGAT 538
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 476 GCGGTGGAGGGAGCTCTTCAGGTGGATTCTTCCTTTTCGGGTTTCTTTTGTTCATGGGAT 535
Query 539 ACTTGAAAGATTTGGAGGGCGAACATGAAAACAACCATTAAA-C--A------CA--A-- 585
|||||||||||||||||||||||||||||||||||||||||| | | || |
Sbjct 536 ACTTGAAAGATTTGGAGGGCGAACATGAAAACAACCATTAAATCGGAGGAAAACATGATG 595
Query 586 CACA--CA-AA--------TCTCAAGACAAGTATTCTCCAAAAGAAATCG-TGTATCAGA 633
|||| || || |||||||||||||||||||||| ||||||| ||||||| |
Sbjct 596 CACAAGCACAACAGACAAATCTCAAGACAAGTATTCTCCAAGAGAAATCTCTGTATCAAA 655
Query 634 GACAATAGGTTCTAGTGCTAGCAATAGGCACAGATCT---T----AT----GTTTTCTCA 682
||||||| ||||||| |||||||||||||||||| | | || ||||||||
Sbjct 656 AACAATAGATTCTAGTACTAGCAATAGGCACAGATTTGAGTTGTTATTTATGTTTTCTCT 715
Query 683 GTTGGGTTATTGAATAAGATTCTTGTTCCGTGACACAAACAAAGCTCATCTTATCCAAAA 742
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GTTGGGTTAT-GAATGAGATTCTTGTTCCGTGACACAAACAAAGCTCATCTTATCCAAA- 773
Query 743 ATGTTTATGGAACCAGGTTTGGGAGATGCAG 773
||||||||||||||||||||||||||||||
Sbjct 774 -TGTTTATGGAACCAGGTTTGGGAGATGCAG 803
> AT1G30473.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr1:10786979-10788683 FORWARD LENGTH=1532
Length=1532
Score = 416 bits (225), Expect = 1e-115
Identities = 357/413 (86%), Gaps = 39/413 (9%)
Strand=Plus/Minus
Query 397 GGAAAAGAGAAATCACCAAAGCTTGATGACGGTGGAAACGGATTCCCGCCTCGAGATGAt 456
||||||| ||||| |||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 1532 GGAAAAGTTAAATCCCCAAAGCTTGATGACGGTGGAAACGGGTTCCCACCTCGGGATGAT 1473
Query 457 ggtggtggtggtggtggcggaggtggtggAGGGAGCTCTTCAGGTGGATTCTTCCTCTTC 516
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1472 GGTGGTGGTGGTGGTGGCGGAGGCGGTGGAGGGAGCTCTTCAGGTGGATTCTTCCTTTTC 1413
Query 517 GGGTTTCTTTTGTTCATGGGATACTTGAAAGATTTGGAGGGCGAACATGAAAACAACCAT 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 GGGTTTCTTTTGTTCATGGGATACTTGAAAGATTTGGAGGGCGAACATGAAAACAACCAT 1353
Query 577 TAAA-C--A------CA--A--CACA--CA-AA--------TCTCAAGACAAGTATTCTC 612
|||| | | || | |||| || || |||||||||||||||||||
Sbjct 1352 TAAATCGGAGGAAAACATGATGCACAAGCACAACAGACAAATCTCAAGACAAGTATTCTC 1293
Query 613 CAAAAGAAATCG-TGTATCAGAGACAATAGGTTCTAGTGCTAGCAATAGGCACAGATCT- 670
||| ||||||| ||||||| | ||||||| ||||||| |||||||||||||||||| |
Sbjct 1292 CAAGAGAAATCTCTGTATCAAAAACAATAGATTCTAGTACTAGCAATAGGCACAGATTTG 1233
Query 671 --T----AT----GTTTTCTCAGTTGGGTTATTGAATAAGATTCTTGTTCCGTGACACAA 720
| || |||||||| |||||||||| |||| ||||||||||||||||||||||
Sbjct 1232 AGTTGTTATTTATGTTTTCTCTGTTGGGTTAT-GAATGAGATTCTTGTTCCGTGACACAA 1174
Query 721 ACAAAGCTCATCTTATCCAAAAATGTTTATGGAACCAGGTTTGGGAGATGCAG 773
||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1173 ACAAAGCTCATCTTATCCAAA--TGTTTATGGAACCAGGTTTGGGAGATGCAG 1123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37575141956
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5