BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473276
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30480.1 | Symbols: DRT111 | D111/G-patch domain-containing ... 1940 0.0
> AT1G30480.1 | Symbols: DRT111 | D111/G-patch domain-containing
protein | chr1:10790022-10792575 FORWARD LENGTH=1609
Length=1609
Score = 1940 bits (1050), Expect = 0.0
Identities = 1324/1445 (92%), Gaps = 64/1445 (4%)
Strand=Plus/Plus
Query 1 TCTCGCACAAATCAA-TTTAAGAACGTTGGCTTCTATTGCAAGAAT-T--AT-------- 48
||||||||||||||| ||||| | |||||||||||||||||||||| | ||
Sbjct 50 TCTCGCACAAATCAATTTTAA-AGCGTTGGCTTCTATTGCAAGAATCTAAATAGCCCAGA 108
Query 49 AAAT-AAAT---A-GCCAACATATTTCTCCTTTGTTAGTCGGtttttttttttCGaaaaa 103
|||| |||| | | ||| |||||||||||||||| ||||||||||| ||||| || |
Sbjct 109 AAATAAAATAAAAGGACAAAATATTTCTCCTTTGTTTGTCGGTTTTTTATTTTC-CAACA 167
Query 104 aaCATAATAACTTT-TATTTATTTGGTCTTTATTTTCGGAAGGCTGATCGG--------- 153
|| || || | ||| | |||| || | ||| || | ||||||||||||
Sbjct 168 AA-ATGAT-A-TTTGT-TTTA-TT--T-ATTA-TTAC-TAAGGCTGATCGGAAAAAATTA 217
Query 154 AAAACCCTAATTTGAGCAGATCTTTCC-ATTGAAAGCGAACCGTGAA-TCAGAAGATTTT 211
||||||||||||||||||||||||||| ||||||||||||||||||| | | || | |
Sbjct 218 AAAACCCTAATTTGAGCAGATCTTTCCAATTGAAAGCGAACCGTGAATTTTG-AG--TCT 274
Query 212 C-TTACCAGCGGCG-AAAAATGCTTGGTGGATTATACGGAGATCTTCCTCCACCGTCCGA 269
| ||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 275 CTTTACCGGCGGCGAAAAAATGCTTGGTGGATTATACGGAGATCTTCCTCCACCGACCGA 334
Query 270 TGATGAGAAACCCAGCGGAAACTCCTCCTCCGTCTGGTCAAGCAGTACCAAAATGGCTCC 329
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 335 TGATGAGAAACCCAGTGGAAACTCCTCTTCCGTCTGGTCAAGCAGTACCAAAATGGCTCC 394
Query 330 ACCTACGCTTCGCAAACCACCTGCTTTTGCTCCGCCGCAAACAATCCTAAGACCTCAGAA 389
|||||| |||||||||||||| ||||||||||| |||||||||||| ||||||||| ||
Sbjct 395 ACCTACACTTCGCAAACCACCAGCTTTTGCTCCCCCGCAAACAATCTTAAGACCTCTCAA 454
Query 390 CAAACCAAAACCTATCGTGTCATCGCAGTACAAGCCTCCTCCTCCTTCTTCTACTAATTC 449
|||||| ||||||||||| || | | |||||||||||||||| | | | | | |||||
Sbjct 455 CAAACCTAAACCTATCGTTTCGGCTCCGTACAAGCCTCCTCCT-C--C-T-T-CGAATTC 508
Query 450 ATCGCAATCGGTGCTTACTCCGGCGAACGAATCAGCACCTTCGCATCAGCCAGCA----T 505
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct 509 ATCGCAATCGGTGCTTATTCCGGCGAACGAATCAGCACCTTCGCATCAGCCTGCATTGGT 568
Query 506 TGGT-TG----CATCGGTGATTGAAGAGTACGATCCAGCGAGACCTAACGATTACGAGGA 560
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 TGGTGTGACTTCATCGGTGATTGAAGAGTACGATCCAGCGAGACCTAACGATTACGAGGA 628
Query 561 GTATAAAAGGGAGCAGAAGAGGAAAGCTATGgaagctgagatgaagcgagagcttgataa 620
|||||| |||||| ||||||||||||||| ||||||||||||||| |||||| | |||||
Sbjct 629 GTATAAGAGGGAGAAGAAGAGGAAAGCTACGGAAGCTGAGATGAAACGAGAGATGGATAA 688
Query 621 gagaaggcaagaggaagaggaaagagacaagagagaaagagaagagagggacaaggaaag 680
||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 689 GAGAAGGCAAGAGGATGAGGAAAGAGATAAGAGAGAAAGAGAAGAGAGGGAGAAGGAGAG 748
Query 681 agagagagaTAACAGTGATCCGTCTCGATTGAATATCTCCGGTGAGGAAGCGTGGAAGAG 740
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 749 AGAGAGAGATAACAGTGATCCGTCTCGGTTGAATATCTCCGGTGAGGAAGCGTGGAAGAG 808
Query 741 ACGCGCTGCTATGAGTGGTGGTGGAAGTGGTGGGAAGCGAAGATCTTCGTCTCCGCCTGG 800
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 809 ACGCGCTGCTATGAGTGGTGGTGGAAGTGGTGGGAAGGGAAGATCTTCGTCTCCGCCGGG 868
Query 801 GAATGTTGATGGGTTTAGTATCGGGAAATCGGAGACGAGTGGGTTAGGAGTTGGAGCAGG 860
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 869 GAATGTTGATGGGTTTAGTATTGGGAAATCGGAGACGAGTGGGTTAGGAGTAGGAGCAGG 928
Query 861 TGGGCAGATGACAGCTGCTCAGAGGATGATGGCGAAGATGGGATGGAAACAAGGACAAGG 920
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 TGGACAGATGACAGCTGCTCAGAGGATGATGGCGAAGATGGGATGGAAACAAGGACAAGG 988
Query 921 GCTTGGGAAATCAGAGCAAGGGATTACTACGCCATTGATGGCTAAGAAGACTGATCGTAG 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 GCTTGGGAAATCAGAGCAAGGGATTACTACGCCATTGATGGCTAAGAAGACTGATCGTAG 1048
Query 981 AGCTGGTGTGATTGTGAATGCTAGTGAGAATAAATCTTCTTCGGCGGAGAAGAA-G--GT 1037
||||||||| ||||| |||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1049 AGCTGGTGTCATTGTCAATGCTAGTGAGAATAAATCTTCTTCGGCGGAGAAGAAGGTTGT 1108
Query 1038 TAAGAGTGTTAATATCAATGGTGAACCAACCAGGGTTTTGCTTCTTAGAAACATGGTTGG 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 TAAGAGTGTTAATATCAATGGTGAACCAACCAGGGTTTTGCTTCTTAGAAACATGGTTGG 1168
Query 1098 GCCAGGAGAAGTAGATGATGAGCTAGAAGATGAGGTGGGAGGCGAGTGTGGCAAATACGG 1157
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1169 GCCAGGACAAGTAGATGATGAGCTAGAAGATGAGGTAGGAGGCGAGTGTGGCAAATACGG 1228
Query 1158 TACAGTCACTCGTGTACTGATATTCGAGATCACTGAACCGAACTTCCCTGTACACGAAGC 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 TACAGTCACTCGTGTACTGATATTCGAGATCACTGAACCGAACTTCCCTGTACACGAAGC 1288
Query 1218 AGTAAGAATCTTTGTTCAGTTTTCAAGACCCGAGGAAACAACTAAAGCCCTTGTAGACCT 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 AGTAAGAATCTTTGTTCAGTTTTCAAGACCCGAGGAAACAACTAAAGCCCTTGTAGACCT 1348
Query 1278 CGATGGGAGATACTTTGGAGGAAGAACTGTACGTGCAACATTCTATGATGAGGAGAAATT 1337
||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 1349 CGATGGGAGATACTTTGGAGGAAGAACCGTACGTGCAACGTTCTATGATGAAGAGAAATT 1408
Query 1338 CAGTAAGAACGAGTTGGCTCCAGTTCCAGGTGAAATCCCTGGCTATTAACAACTCCTAAG 1397
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1409 CAGTAAGAACGAGTTGGCTCCAGTTCCAGGTGAAATCCCTGGCTATTAATAACTCCTAAG 1468
Query 1398 ACAAA 1402
|||||
Sbjct 1469 ACAAA 1473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69075949920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5