BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473278
Length=945
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30500.2 | Symbols: NF-YA7 | nuclear factor Y, subunit A7 | ... 1371 0.0
AT2G34720.1 | Symbols: NF-YA4 | nuclear factor Y, subunit A4 | ... 311 9e-84
> AT1G30500.2 | Symbols: NF-YA7 | nuclear factor Y, subunit A7
| chr1:10804450-10806319 REVERSE LENGTH=970
Length=970
Score = 1371 bits (742), Expect = 0.0
Identities = 863/920 (94%), Gaps = 13/920 (1%)
Strand=Plus/Plus
Query 32 TCGTCATTGAAAATTGCAGAGAGAATTCTCCTTCGGACATTAAGCTCATGAGTCATGACT 91
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 58 TCGTCAGAGAAAATTGCAGAGAGAATTCTGCTTCGGACATTAAGCTCATGAGTCATGACT 117
Query 92 TCTTCAATCCATGAGCTTTCTGATAACATTGGAAGTCATGAGAAGCAAGAACAGAGAGAT 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TCTTCAATCCATGAGCTTTCTGATAACATTGGAAGTCATGAGAAGCAAGAACAGAGAGAT 177
Query 152 TCTCATTTCCAACCACCAATTCCTCCTGGAAGAAATTATGAATCCATAGCTACAAGTTTA 211
|||||||||||||||||||| ||| ||| ||||||||||||||| || | ||||||||||
Sbjct 178 TCTCATTTCCAACCACCAATCCCTTCTGCAAGAAATTATGAATCAATTGTTACAAGTTTA 237
Query 212 GTCTACTCGGAACCGGTTCCTCAAAAACTGAA-GGCACCTGGACAATATCCATATCCAGA 270
|||||||| || |||| || | ||| | | |||||||||||||||||||||||||||
Sbjct 238 GTCTACTCAGACCCGGGGACT-ACAAATTCCATGGCACCTGGACAATATCCATATCCAGA 296
Query 271 TCCTTACTACAGAAGCATCTTTGCACCGCCTCCACAACCGTATACCGGGGTACATCTACA 330
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCCTTACTACAGAAGCATATTTGCACCGCCTCCACAACCGTATACCGGGGTACATCTACA 356
Query 331 GTTGATGGGAATGCAGCAACAAGGTGTTCCTTTACCATCTGATGCAGTTGAGGAACCTGT 390
|||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 357 GTTGATGGGAGTGCAGCAACAAGGCGTTCCTTTACCATCTGATGCAGTCGAGGAACCTGT 416
Query 391 TTTTGTTAACGCAAAGCAATACCACGGTATACTAAGGCGCAGGCAATCTAGAGCAAGACT 450
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 417 TTTTGTTAACGCAAAGCAATACCACGGTATACTAAGGCGCAGACAATCAAGAGCAAGACT 476
Query 451 TGAGTCTCAGAATAAAGTCATCAAGTCACGTAAGCCATATTTACATGAATCACGGCATTT 510
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 477 TGAGTCTCAGAATAAAGTCATCAAGTCACGTAAGCCGTATTTGCATGAATCTCGGCATTT 536
Query 511 GCATGCGATAAGACGACCAAGAGGATGTGGCGGTCGGTTTCTAAATGCCAAGAAGGACGG 570
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 537 GCATGCGATAAGACGACCAAGAGGATGTGGCGGGCGGTTTCTAAATGCCAAGAAGGA-GG 595
Query 571 C-GAGCATCACGAAGACAGTACTCATGAAGAAACTTCCAACCTCAGCTCTGATAAATCCG 629
||||||||||||||||||| ||||||||||| |||||||| ||| ||| ||||||||
Sbjct 596 ATGAGCATCACGAAGACAGTAGTCATGAAGAAAAATCCAACCTTAGCGCTGGTAAATCCG 655
Query 630 CCATGGCTGCTTCTAGTGGTACATCTTGAGAAGGTCATCCAAGTAGCTTTGTTGTATTTT 689
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 656 CCATGGCTGCTTCTAGTGGTACATCTTGAGAAGGTCCTACAAGTAGCTTTGTTGTATTTT 715
Query 690 GGCTCTGTTTGGTCTCAGATCATCTATGTCTTT-AGTGTATGATATATACAAATCTTTGT 748
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 716 GGCTCTGTTTGGTCTCAGATCATCTATGTCTTTTAGTGTATGATATATACAAATCTTTGT 775
Query 749 AGAAAGGTATAGATAGGTTCTTGGGA-GCAATTAGGTAAACGTGAAGTGGGTTTTAGACT 807
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 776 ATAAAGGTATAGATAGGTTCTTGGGAAGCAATTAGGTAAACGTGAAGTGGGTTTTAGACT 835
Query 808 TGTGATTATTAAATAAAACCCACTGAGGAAGAAAGG-AAATAAATAAATGTC-ATAATGT 865
||||||||||||||||||||||| |||||| ||||| |||||||||| |||| || ||||
Sbjct 836 TGTGATTATTAAATAAAACCCACCGAGGAA-AAAGGGAAATAAATAA-TGTCCATGATGT 893
Query 866 TTAGTTAAATAGTACAATGCTACTTATATTGTTTTGTTGTAAGAAATTTTGGTAATAAAA 925
||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 894 TTAGTTAAATA---CAATGCTACTGATATTGTTTTGTTATAAGAAATTTTGGTAATAAAA 950
Query 926 CAAAAAATGGAAGAATCCAC 945
| || |||||||||||||||
Sbjct 951 CGAAGAATGGAAGAATCCAC 970
> AT2G34720.1 | Symbols: NF-YA4 | nuclear factor Y, subunit A4
| chr2:14649767-14651627 REVERSE LENGTH=958
Length=958
Score = 311 bits (168), Expect = 9e-84
Identities = 401/508 (79%), Gaps = 38/508 (7%)
Strand=Plus/Plus
Query 76 CTCATGAGTCATGACTTCTTCAATCCATGAGCTTTCTGATAACATTGGAAGTCATGAGAA 135
||||||| |||||||||||||| | |||||||| |||||||||| || |||||||| |||
Sbjct 101 CTCATGAATCATGACTTCTTCAGTACATGAGCTCTCTGATAACAATGAAAGTCATGCGAA 160
Query 136 GCAAGAACAG-AGAGATTCTCATTTCCAACCACCA-ATTCCTCCTGGAAGAAATTATGAA 193
| |||||| | |||||| || || |||| || ||||| | ||| ||| || |||
Sbjct 161 GAAAGAAC-GTCCAGATTCCCAAACCCGACCA-CAGGTTCCTTCAGGACGAAGTTCGGAA 218
Query 194 TCCATAGCTAC-AAGTTTAGTCTACTCGGAACCGGTTCCTCAAAAACTGAAGGCACCTGG 252
|| || | ||| || | | |||||||| | | | || | | | ||||| |||
Sbjct 219 TCTATTGATACAAACTCT-GTCTACTCAG-A---G--CC-C----A-T---GGCACATGG 262
Query 253 ACAATATCCATATCCAGATCCTTACTACAGAAGCATCTTTGCAC--C--GC----C-TCC 303
| ||| || |||||||||||||||||||||||| ||||||||| | || | |||
Sbjct 263 ATTATACCCGTATCCAGATCCTTACTACAGAAGCGTCTTTGCACAGCAAGCGTATCTTCC 322
Query 304 ACAACCGTATACC-GGGGTAC-ATCTACAGTTGATGGGAATGCAGCAACAAGGTGTTCCT 361
||| || ||| || ||||| | || | ||||| |||||||||||||| | ||| |||||
Sbjct 323 ACATCCCTAT-CCTGGGGTCCAAT-TGCAGTTAATGGGAATGCAGCAGCCAGGAGTTCCA 380
Query 362 TTACCATCTGATGCAGTTGAGGAACCTGTTTTTGTTAACGCAAAGCAATACCACGGTATA 421
|| | || ||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 381 TTGCAATGTGATGCAGTCGAGGAACCTGTTTTTGTTAACGCAAAGCAATACCATGGTATA 440
Query 422 CTAAGGCGCAGGCAATCTAGAGCAAGACTTGAGTCTCAGAA-TAAAGTCATCAA-GTCAC 479
|| |||||||||||||| | |||| ||||||| | | ||| || || |||||| | ||
Sbjct 441 CTCAGGCGCAGGCAATCCCGGGCAAAACTTGAGGCAC-GAAATAGAGCCATCAAAG-CAA 498
Query 480 GTAAGCCATATTTACATGAATCACGGCATTTGCATGCGATAAGACGACCAAGAGGATGTG 539
|||||||| | |||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 499 AAAAGCCATACATGCATGAATCTCGGCATTTACATGCGATAAGACGGCCAAGAGGATGTG 558
Query 540 GCGGTCGGTTTCTAAATGCCAAGAAGGA 567
| || |||||||| ||||||||||||||
Sbjct 559 GTGGCCGGTTTCTCAATGCCAAGAAGGA 586
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46215415240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5