BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473282

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G30515.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   588    2e-167


> AT1G30515.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant 
structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT4G21740.1); 
Has 20 Blast hits to 20 proteins in 4 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:10809289-10809915 
REVERSE LENGTH=627
Length=627

 Score =  588 bits (318),  Expect = 2e-167
 Identities = 396/432 (92%), Gaps = 11/432 (3%)
 Strand=Plus/Plus

Query  1    AAAATGGCTGCACACAAAACCAGTGAGTTTCCACCGTTGATTTCAATGATGATCGTG-T-  58
            |||||||| ||||||||||||||||||| ||||||||||||||||||| ||||| || | 
Sbjct  47   AAAATGGCCGCACACAAAACCAGTGAGTATCCACCGTTGATTTCAATGCTGATCATGTTC  106

Query  59   -TCATCGTCCTAGAATCAACAAGTATCAATGCAAGAGAATTACGACCCTCCGATCACGGT  117
             ||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||
Sbjct  107  ATCATCGTCCTAGAATCAACGATTATCAATGCAAGAGAATTACGACCGTCCGATCACGGT  166

Query  118  CTTGAGTATTACTACGAACCAGGCGAGTCATCGGAAATGACGTCATTCTTCGGACCACCT  177
            || ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct  167  CTCGAGTACTACTACGAACCAGGCGAGTCATCAGAAATGACGTCATTCTTTGGACCACCT  226

Query  178  TCTTCAAATGAGCTTACCTCG-TCGTCATCACCGTCTAGCTCGATATTACCGAGTGCGGT  236
            ||||||||||| || || ||| |  ||||||||||||||||||||||| |||||||||||
Sbjct  227  TCTTCAAATGATCTAACGTCGAT-ATCATCACCGTCTAGCTCGATATTGCCGAGTGCGGT  285

Query  237  GAAATCTCCAATGAAGAAGATGTCGTCATCAAAAGATCAGGATGATGATCACGTGATGAA  296
            ||| ||||||||   ||||| | | | ||||||||||||||||||||||| |||||||||
Sbjct  286  GAAGTCTCCAAT---GAAGACG-C-T-ATCAAAAGATCAGGATGATGATCGCGTGATGAA  339

Query  297  TCACGTGCTGGTTGTGGGCAGCTTGGTGTGTGGAGTCTCCGGCGTAGCTTTGATGGTCGC  356
            |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct  340  TCACGTGCTGGTTGTGGGCAGCTTGGTGTGTGGACTCTCCGGCGTGGCTTTGATGGTCGC  399

Query  357  TTCTGCTCTCATTTATTTTCTTGGATACCCGAAAACACAAAATTCCTCAGTTAATTGTGA  416
            ||||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||||
Sbjct  400  TTCTGCTCTCATTTATTTTCTCGGTTACCCGAAAACGCAAAATTCCTCTGTTAATTGTGA  459

Query  417  TCACATTCATAA  428
            ||||||||||||
Sbjct  460  TCACATTCATAA  471


 Score = 82.4 bits (44),  Expect = 4e-15
 Identities = 66/75 (88%), Gaps = 7/75 (9%)
 Strand=Plus/Plus

Query  457  AATAAAGATGTTATCATCTG--ATT-TA-GAAAACAGATACTAAT---CTTTTGGTTGGT  509
            ||||||||||||||||| |   ||| || ||||||||||||||||   ||||||||||||
Sbjct  540  AATAAAGATGTTATCATGTATTATTGTAAGAAAACAGATACTAATAATCTTTTGGTTGGT  599

Query  510  TATTGATTATGTTTG  524
            |||||||||||||||
Sbjct  600  TATTGATTATGTTTG  614



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25066839353


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5