BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473284
Length=1233
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30540.1 | Symbols: | Actin-like ATPase superfamily protein... 1997 0.0
> AT1G30540.1 | Symbols: | Actin-like ATPase superfamily protein
| chr1:10816774-10819362 REVERSE LENGTH=1423
Length=1423
Score = 1997 bits (1081), Expect = 0.0
Identities = 1185/1236 (96%), Gaps = 3/1236 (0%)
Strand=Plus/Plus
Query 1 ATATTTCCTAAAAAAGTCAAC-AAGGCAGAGAG--ATATATCTTTAGACGAAATTGAAAA 57
||||||||| ||||||||||| ||| ||||||| |||||||||| ||||||||||||||
Sbjct 12 ATATTTCCTGAAAAAGTCAACAAAGACAGAGAGATATATATCTTTCGACGAAATTGAAAA 71
Query 58 TTTGAGGTAACCTTGATCTCCGATCGAAAGGGCACTAATTTCTCACTGGCGTGTCTCAAG 117
||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 72 TTTCAGGTATCCTTGATCTCCGATCGAAAGGGCACTAATTTCTTACTGGCGTGTCTCAAG 131
Query 118 TCTCGACGACCCATTTCTCCATTTTCCTTGATCTCATCTGGGTTGGTGTTTATTGGTGAA 177
|||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||
Sbjct 132 TCTCGACGACCCATTTCTCCATCTTCCTTGACCTCATCTGGGTTGGTTTTTATTGGTGAA 191
Query 178 TGAGGAATCCACATAGCAATGGAAACCTTCGGAAGCTTCAAGCTGATGGAGGAGGAGAAG 237
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 192 TGAGGAATCCACATAGCAATGGAAACCTTCGGAAGCTTGAAGCTGATGGAGGAGGAGAAG 251
Query 238 CCACGGAAGAGAACGGCTTCGTAGATGGTGTTATCTTAGGCCTTGACGGTGGCGCCACCT 297
||||||| |||||||| |||||| | || || ||||| ||||||||||||||||||||||
Sbjct 252 CCACGGAGGAGAACGGTTTCGTAAACGGCGTAATCTTGGGCCTTGACGGTGGCGCCACCT 311
Query 298 CCACGGTATGCGTTTGCGTTCCATTTTTCCCATTTGGAGATCGTTTCCCGGAGCCTCTTC 357
| |||||||||||||||||||||||||| | ||||| || ||||||||||| |||||||
Sbjct 312 CAACGGTATGCGTTTGCGTTCCATTTTTTTCGTTTGGTGAACGTTTCCCGGATCCTCTTC 371
Query 358 CGATCCTCGGTCGTGCCGTCGCCGGTTGCACCAATCGCAACAGCGTTGGAGAAACTGCAG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 CGATCCTCGGTCGTGCCGTCGCCGGTTGCACCAATCGCAACAGCGTTGGAGAAACTGCAG 431
Query 418 CGAGGGATTCACTAGAGCAAGTGATTTCTGAGGCACTTGTACAATCGGGTTCTGATAAAT 477
| ||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||
Sbjct 432 CAAGGGATTCACTAGAGCAAGTGATTTCTGAGGCACTTGTACAGTCTGGTTTTGATAAAT 491
Query 478 CAGATGTTCGCGGTGTATGCTTAGGTGTTTCAGGTGTTAATCATCCCTCAGACCAGGAAA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 CAGATGTTCGCGGTGTATGCTTAGGTGTTTCAGGTGTTAATCATCCCTCAGACCAGGAAA 551
Query 538 AGATAGAAAATTGGATAAGGGACATCTTCCCTAGTCACGTCAAGGTATATGTTCAGAATG 597
||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 552 AGATAGAAAATTGGATAAGGGACATGTTTCCTAGTCATGTCAAGGTATATGTTCAGAATG 611
Query 598 ATGCTATAGTGGCTTTAGCTAGTGGAACAATGGGAAAGCTCCATGGTTGTGTTCTAATCG 657
|||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||
Sbjct 612 ATGCTATAGTGGCTTTAGCTAGTGGAACCATGGGAAAGCTCCATGGCTGCGTTCTAATCG 671
Query 658 CTGGTACAGGATGTATAGCCTATGGCTTTGATGAAGATGGCAAGGAGGCTAGGGCTTCTG 717
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 672 CTGGTACAGGATGTATAGCTTATGGCTTTGATGAAGATGGCAAGGAGGCTAGGGCATCTG 731
Query 718 GTGGTGGACCAATCTTAGGTGATTGGGGAAGTGGCTATGGAATTGCTGCACAGGCCTTGA 777
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 732 GTGGTGGACCAATCTTAGGTGATTGGGGAAGTGGCTATGGAATTGCTGCACAGGCCTTAA 791
Query 778 CGGCGGTGATTAGAGCTCATGATGGTCGTGGCCCACAAACGATGCTTACAAGTACCATCT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 CGGCGGTGATTAGAGCTCATGATGGTCGTGGCCCACAAACGATGCTTACAAGTACCATCT 851
Query 838 TAAAAGCACTTGGACTTTCCTCTCCAGACGAACTCATCGGGTGGACTTACGCTGATCCAT 897
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 852 TAAAAGCACTTGGACTCTCCTCTCCAGACGAACTCATCGGTTGGACTTACGCTGATCCAT 911
Query 898 CTTGGGCACGTATCGCTGCTCTTGTTCCTCAAGTAGTATCTTGTGCAGAAGCTGGTGATG 957
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 912 CTTGGGCACGTATCGCTGCTCTTGTTCCTCAAGTAGTCTCTTGTGCAGAAGCTGGTGATG 971
Query 958 AAATTTCAGATAAGATCTTGGTTGATGCAGCTGAGGATTTAGCTCTAAGTGTGAAGGCTG 1017
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 972 AAATTTCAGATAAGATCTTGGTTGATGCAGCTGAGGATTTAGCTCTCAGTGTGAAAGCTG 1031
Query 1018 TTGTACAGAGACTTGGTTTATGTGGCGAAGATGGGACAGCTTCTTTCCCGGTTGTAATGG 1077
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1032 TTGTACAGAGACTTGGTTTATGTGGCAAAGATGGGACAGCTTCTTTCCCGGTTGTAATGG 1091
Query 1078 TGGGCGGAGTCCTAAACGCTAATCAGAAATGGGACATTGGAAAAGAAGTCTCAAAGCGCA 1137
| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1092 TAGGCGGAGTCCTTAACGCTAATCAGAAATGGGACATTGGAAAAGAAGTCTCTAAGCGCA 1151
Query 1138 TTAACAGATACTTTCCCGGGGCTCAAACAATCATACCAAAGGTAGAGCCAGCTGTTGGAG 1197
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1152 TTAACAGATACTTTCCAGGGGCTCAAACTATCATACCAAAGGTAGAGCCAGCTGTTGGAG 1211
Query 1198 CAGCATTGTTGGCCATGAACTTCTTATCAAGTTAAC 1233
||||||||||||||||||||||||||||||||||||
Sbjct 1212 CAGCATTGTTGGCCATGAACTTCTTATCAAGTTAAC 1247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60592057815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5