BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473294
Length=1205
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30630.1 | Symbols: | Coatomer epsilon subunit | chr1:10858... 1875 0.0
AT2G34840.1 | Symbols: | Coatomer epsilon subunit | chr2:14702... 944 0.0
> AT1G30630.1 | Symbols: | Coatomer epsilon subunit | chr1:10858298-10860261
REVERSE LENGTH=1215
Length=1215
Score = 1875 bits (1015), Expect = 0.0
Identities = 1146/1208 (95%), Gaps = 13/1208 (1%)
Strand=Plus/Plus
Query 1 ACACTTCAGTTTTCTCTATTTTGGAGTTAGACACGGATCTGTGAGATCTAGAGgaagaag 60
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 9 ACACTTCAGTTTTCTTTATTTTGGAGTTAGACACGGATCTGTGAGATCTAGAAGAAGAAG 68
Query 61 aagaagaagaagCTGAGACAATGGCATCCATGGCAGGACCAGATCATCTCTTTAACCTGA 120
|||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||
Sbjct 69 AAGAAGAAGAAGCTAAGACAATGGCATCCATGGCAGGACCAGATCATCTCTTCAATTTGA 128
Query 121 GAAACCATTTTTACTTGGGTTCTTACCAAGCGGCGATCAACAACAGCGAGATCCCTAATC 180
|||||||||| ||||||||| |||| ||||| ||||||||||||||||||||||||||||
Sbjct 129 GAAACCATTTCTACTTGGGTGCTTATCAAGCTGCGATCAACAACAGCGAGATCCCTAATC 188
Query 181 TTTCGCAGGAAGATATCGTCGAGCGAGACTGCCTCGTCCATCGCGCTTACATCGCTCTCG 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 189 TTTCGCAGGAAGATATCGTCGAGCGAGACTGTCTCGTCCATCGCGCTTACATCGCTCTCG 248
Query 241 GAAGTTATCAGCTTGTCATCAGTGAGATCGATGAAGCGGCTGCTACTCCTCTACAGGCAG 300
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 249 GAAGTTACCAGCTTGTCATCAGTGAGATCGATGAAGCCGCTGCTACTCCTCTACAGGCAG 308
Query 301 TGAAACTCCTTGCTATGTATCTAGCGAGTCCTGGAAATAAGGAATCAACAATTTCGAGCT 360
||||||||||||||||||||||| ||||||||| ||| ||||||||||| ||||||||||
Sbjct 309 TGAAACTCCTTGCTATGTATCTATCGAGTCCTGAAAACAAGGAATCAACCATTTCGAGCT 368
Query 361 TGAGGGAATGGTTGGCAGATCCAACTGTAGGAAACAATGCTATTATTC-GGTTGATTGCT 419
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 369 TGAGGGAATGGTTGGCAGATCCAACTGTAGGAAACAATGCTATTA-TCAGGTTGATTGCT 427
Query 420 GGTACTATATTCATGCATGAGGAAGACTATAACGAGGCTCTGAAGCACACTCATTCTGGA 479
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 428 GGTACTATATTCATGCATGAGGAAGACTATAATGAGGCTCTGAAGCACACTCATTCTGGA 487
Query 480 GGAACCATGGATCTGCATGCTTTGAATGTCCAGATATTCATAAAGATGCATAGATCAGAT 539
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 488 GGAACCATGGATCTGCATGCTTTGAATGTCCAGATATTCATAAAGATGCACAGATCAGAT 547
Query 540 TATGCAGAGAAACAGCTAAGAGTGATGCAACAGATTGATGAAGACCACACACTCACTCAA 599
| ||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 548 TTTGCGGAGAAACAACTGAGAGTGATGCAACAGATTGATGAAGACCACACACTCACTCAG 607
Query 600 CTCGCGAGCGCGTGGTTGAACCTGGCAGTAGGTGGTTCCAAAATACAGGAAGCTTATCTA 659
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 608 CTCGCGAGCGCGTGGTTGAATCTGGCAGTAGGTGGTTCCAAGATACAGGAAGCTTATCTA 667
Query 660 ATCTTCCAGGATTTCTCTGAGAAGTACCCAATGACAAGTTTGATCTTGAACGGCAAAGCA 719
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 668 ATCTTCCAGGATTTCTCTGAGAAGTACCCAATGACAAGCTTGATCTTGAACGGCAAAGCA 727
Query 720 GTTTGCTGCATGCATATGGGTAATTTTGAAGAAGCTGAGACTCTACTACTTGAAGCACTC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 GTTTGCTGCATGCATATGGGTAATTTTGAAGAAGCTGAGACTCTACTACTTGAAGCACTC 787
Query 780 AACAAGGATGCTAAAGACCCAGAAACTCTTGCAAACCTAGTTGTATGCAGCCTTCATGTC 839
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 788 AACAAGGATGCTAAAGACCCAGAAACTCTTGCAAACCTCGTTGTATGCAGTCTTCACGTC 847
Query 840 GGGAAATCATCTTCGCGATACCTAAACCAGCTGAAACTTTCACATCCAGAACACGTCCTT 899
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 GGGAAATCATCTTCTCGCTACCTAAACCAGCTGAAACTTTCACATCCAGAACACGTCCTT 907
Query 900 GTGAAGCGAGCAGCATCAGCTGAAGATAACTTCGAGAGAGCTCTTCAATCTTTCGCCTGA 959
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 908 GTGAAGCGAGCAGCATCAGCTGAAGATAACTTCGAGAGAGCACTTCAATCTTTCGCCTGA 967
Query 960 AGGACCTCAAAATCCATGGAATCAATTTGCGTTATAATCTACCAGCAGAACATCATATTC 1019
|| |||||||| |||||||||||||||||| |||| ||||||||| |||||||||||||
Sbjct 968 AGTACCTCAAAGTCCATGGAATCAATTTGCCTTATGATCTACCAGAAGAACATCATATTA 1027
Query 1020 TTACC-AGCCCTGTCTTGAAATTATCATATATGAACAGtttttttttttttCCATCGGAT 1078
||||| | |||| |||||||||||||||| || ||||||||||| |||| ||||
Sbjct 1028 TTACCGA-CCCTATCTTGAAATTATCATAGATAAACAGTTTTTT-------CCATTGGAT 1079
Query 1079 ATGTTGCATTTGAATTTGATTTCTCACTGAAGCTTTTGTTGTCATTGAGTTTCGAATCCA 1138
||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1080 ATGTTGCATTTTACTTTGATTTCTCACTGAAGCTTTTGTTTTCATTGAGTTTCGAATCCA 1139
Query 1139 ACAAAACTAGAGATCTTGTTCCTT-AATATCCAGAATCTCCATAACTGATGAGACAAAAG 1197
||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1140 ACAGAACTACAGATCTTGTTCCTTGAA-ATCCAGAATCTCCATAACTGATGAGACAAAAG 1198
Query 1198 CCAGACTT 1205
|||||||
Sbjct 1199 GCAGACTT 1206
> AT2G34840.1 | Symbols: | Coatomer epsilon subunit | chr2:14702488-14704353
FORWARD LENGTH=1185
Length=1185
Score = 944 bits (511), Expect = 0.0
Identities = 786/920 (85%), Gaps = 13/920 (1%)
Strand=Plus/Plus
Query 50 AGAGgaagaagaagaagaagaagCTG-AGACAATGGCATCCAT--G-GCAGGACCAGATC 105
||| ||||||||||||||||||| | || ||||| || |||| | |||||||||||||
Sbjct 85 AGAAGAAGAAGAAGAAGAAGAAGAAGAAG-CAATGTCAGCCATGGGAGCAGGACCAGATC 143
Query 106 ATCTCTTTAACCTGAGAAACCATTTTTACTTGGGTTCTTACCAAGCGGCGATCAACAACA 165
| ||||| ||||| |||||| |||| || ||||| |||| ||| |||||||||||||||
Sbjct 144 ACCTCTTCAACCTCAGAAACAATTTCTATTTGGGAGCTTATCAAACGGCGATCAACAACA 203
Query 166 GCGAGATC-CCTAATCTTTCGCAGGAAGATATCGTCGAGCGAGACTGCCTCGTCCAT-CG 223
|||||||| || || || |||| |||| | ||| || || ||||| ||||| | | ||
Sbjct 204 GCGAGATCGCC-AACCTCTCGCCGGAAAACGCCGTGGAACGTGACTGTCTCGT-CTTCCG 261
Query 224 CGCTTACATCGCTCTCGGAAGTTATCAGCTTGTCATCAGTGAGATCGATGAAGCGGCTGC 283
|||||||||| ||||| || ||||||||||| |||||||||||||||||| | || ||
Sbjct 262 ATCTTACATCGCCCTCGGTAGCTATCAGCTTGTTATCAGTGAGATCGATGAATCAGCCGC 321
Query 284 TACTCCTCTACAGGCAGTGAAACTCCTTGCTATGTATCTAGCGAGTCCTGGAAATAAGGA 343
|||||| ||||| ||||| |||||||| |||||||||||| ||| |||| |||||||||
Sbjct 322 TACTCCACTACAAGCAGTCAAACTCCTCGCTATGTATCTATCGACTCCTCAAAATAAGGA 381
Query 344 ATCAACAATTTCGAGCTTGAGGGAATGGTTGGCAGATCCAACTGTAGGAAACAATGCTAT 403
|||||||||||| ||||||| ||||||||| |||||| |||| |||||||||||| ||
Sbjct 382 ATCAACAATTTCAAGCTTGAAGGAATGGTTAGCAGATTCAACAATAGGAAACAATGATA- 440
Query 404 TATT-CGGTTGATTGCTGGTACTATATTCATGCATGAGGAAGACTATAACGAGGCTCTGA 462
||| || ||||||||||||| ||| ||||||||||| ||||| ||||| || || |||
Sbjct 441 CATTACGATTGATTGCTGGTATTATTTTCATGCATGAAGAAGATTATAATGAAACTTTGA 500
Query 463 AGCACACTCATTCTGGAGGAACCATGGATCTGCATGCTTTGAATGTCCAGATATTCATAA 522
|||| |||||| |||||||||| |||||| || |||| |||||||| ||||||||||| |
Sbjct 501 AGCATACTCATGCTGGAGGAACTATGGATTTGTATGCCTTGAATGTTCAGATATTCATTA 560
Query 523 AGATGCATAGATCAGATTATGCAGAGAAACAGCTAAGAGTGATGCAACAGATTGATGAAG 582
||||||||||| |||| ||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct 561 AGATGCATAGAGCAGAGTATGCTGAGAAGCAGCTTAGAGTGATGCAACAGATTGATGAAG 620
Query 583 ACCACACACTCACTCAACTCGCGAGCGCGTGGTTGAACCTGGCAGTAGGTGGTTCCAAAA 642
||||||| ||||||||||| || ||||| ||||||||||||||||| || ||||| || |
Sbjct 621 ACCACACTCTCACTCAACTTGCTAGCGCTTGGTTGAACCTGGCAGTGGGCGGTTCGAAGA 680
Query 643 TACAGGAAGCTTATCTAATCTTCCAGGATTTCTCTGAGAAGTACCCAATGACAAGTTTGA 702
|||||||||||||||| || ||| ||||||| ||||||||||||||||||||| | ||||
Sbjct 681 TACAGGAAGCTTATCTCATTTTCGAGGATTTTTCTGAGAAGTACCCAATGACATGCTTGA 740
Query 703 TCTTGAACGGCAAAGCAGTTTGCTGCATGCATATGGGTAATTTTGAAGAAGCTGAGACTC 762
||||||| |||||||| |||||||| ||||| |||||||| || || |||||||| || |
Sbjct 741 TCTTGAATGGCAAAGCTGTTTGCTGTATGCAAATGGGTAACTTCGATGAAGCTGAAACAC 800
Query 763 TACTACTTGAAGCACTCAACAAGGATGCTAAAGACCCAGAAACTCTTGCAAACCTAGTTG 822
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 801 TACTTCTTGAAGCACTCAACAAGGATGCTAAAGATCCAGAAACTCTTGCAAATCTTGTTG 860
Query 823 TATGCAGCCTTCATGTCGGGAAATCATCTTCGCGATACCTAAACCAGCTGAAACTTTCAC 882
| ||||| |||||||||||||| || ||||| || |||||| |||||| ||||||||||
Sbjct 861 TGTGCAGTCTTCATGTCGGGAAGTCTTCTTCACGCCACCTAAGCCAGCTAAAACTTTCAC 920
Query 883 ATCCAGAACACGTCCTTGTGAAGCGAGCAGCATCAGCTGAAGATAACTTCGAGAGAGCTC 942
| || |||||| | ||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 921 ACCCGGAACACATACTTGTGAAGCGTGTATCATCAGCTGAAGATAACTTCGAGAGAGCAG 980
Query 943 TTCAATCTT-TCGCCTGAAG 961
|||||| | |||||| |||
Sbjct 981 TTCAAT-TGGTCGCCTAAAG 999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59186442555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5