BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473304
Length=1581
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30730.1 | Symbols: | FAD-binding Berberine family protein ... 2381 0.0
AT1G30720.1 | Symbols: | FAD-binding Berberine family protein ... 1524 0.0
> AT1G30730.1 | Symbols: | FAD-binding Berberine family protein
| chr1:10900854-10902534 FORWARD LENGTH=1681
Length=1681
Score = 2381 bits (1289), Expect = 0.0
Identities = 1482/1576 (94%), Gaps = 10/1576 (1%)
Strand=Plus/Plus
Query 1 ATGGAAAAATTACTCATAATTTGCCTGTTACTAATCTCAGTTTCAGTTGCAACTTCCCAG 60
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||
Sbjct 1 ATGGAAAAATTACTCATAATTTGCATGTTACTAATCTCAGTTTTAGTTGCAACTTCACAG 60
Query 61 TCCCAAACCGATCCGGAGACTTTCCTCCGATGTCTCGTAAGAGAGGGATCAAACCCGCAG 120
|| ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 61 TCGCAAACCGATCCAGAGACATTCCTCCGATGTCTCGTAAGAGAAGGATCAAACCCACAG 120
Query 121 GTTTTCATCTCCGACGTCACCTACATCCCATCAAACTCCTCTTTCACCACCGTCCTCCGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTTTCATCTCCGACGTCACCTACATCCCATCAAACTCCTCTTTCACCACCGTCCTCCGC 180
Query 181 CGCCGCATACCTAACCTCCGTTTCGACAAACCCACCACCCCAAAACCCATCGCCATCATC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGCCGCATACCTAACCTCCGTTTCGACAAACCCACCACCCCAAAACCCATCGCCATCATC 240
Query 241 ACCCCTACCACATGGTCACACATTTCTCCGGCGCTAGCTTGCGCACGCTTACTCCCTGTC 300
||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 241 ACCCCCACCACGTGGTCACACATTTCTCCGGTGCTAGCTTGCGCACGCTTGTTCCCTGTC 300
Query 301 CAAGTCAGAATCCGAAGCGGCGGCCATGATTTCGAAGGACTCTCTTACACCTCCACCGCT 360
|| ||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 301 CAGGTCAGGATCCGAAGCGGCGGCCACGACTTCGAAGGACTCTCTTACACCTCCACAGCT 360
Query 361 CCGTTCTTTGTCATCGACTTGCTCAACTTCAAATCCGTTGACGTGAATCTCACGGAAGGA 420
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 CCGTTCTTCCTCATCGACTTGCTCAACTTCAAATCCGTTGATGTGAATCTCACGGAAGGA 420
Query 421 ACGGCTTGGGTTGATACCGGCGCCACAATCGGAGAGCTTTATTATAAAATCGCTGAGAAA 480
||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 421 ACGGCTTGGGTTGATACCGGCGCTACACTGGGAGAGCTTTATTATAAAATCGCTGAGAAA 480
Query 481 AGCAATGTTCTTGGGTTTCCGGCGGGTTTGTGTACTACATTGGGCGTTGGTGGACATATT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGCAATGTTCTTGGGTTTCCGGCGGGTTTGTGTACTACATTGGGCGTTGGTGGACATATT 540
Query 541 AGCGGCGGAGGGTACGGAACTATGATGAGAAAGTATGGTTTGTCGGTGGATAACGTTGTC 600
||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 541 AGCGGCGGAGGGTACGGGACAATGATGAGAAAGTATGGTTTGTCGGTGGACAACGTTGTC 600
Query 601 GGCTCCAGGATCATCGACTCTAACGGGAATACCTACTTCGATCGAGTGTCCATGGGGGAA 660
||||||||||||||||||||||| ||||| ||||||||||||||| |||| |||||||||
Sbjct 601 GGCTCCAGGATCATCGACTCTAATGGGAACACCTACTTCGATCGAATGTCGATGGGGGAA 660
Query 661 GAGCTTTTCTGGGCGGTTCGAGGAGGTGGAGCCGCAAGTTTCGGTATCGTGATGGGATAC 720
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 661 GAGCTTTTCTGGGCGGTTCGAGGAGGTGGAGCCGCGAGTTTCGGCATCGTGATGGGATAC 720
Query 721 AAAATCCGGTTGGTTCCGGTGCCGGAGAAAGTAACGGTTTTTAGCGTTGGAAAAACCGTC 780
|||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 721 AAAATCCGGTTGGTTCCGGTTCCGGAGAAAGTTACGGTTTTTAGCGTCGGAAAAACCGTC 780
Query 781 GGAGAAGGAGCCGTTGATCTTATAACGAAGTGGCAGAATTTTTCTCACAGTACGGATCGG 840
||||||||||||||||||||||||| |||||||||||| || ||||| ||||||||||||
Sbjct 781 GGAGAAGGAGCCGTTGATCTTATAATGAAGTGGCAGAACTTCTCTCATAGTACGGATCGG 840
Query 841 AATTTGTTCGTGAAGCTGACTTTGACTTTGGTCAACGGTACAAAGCCGGGTGAAAAAACT 900
|||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 841 AATTTGTTTGTGAAGCTGACTTTGACTTTAGTCAACGGTGCAAAGCCGGGTGAAAAAAAG 900
Query 901 GTTTTAGCGACTTTCATTGGGATGAAT-TTAGGCGGGTTGGATAAGACGTTGAACGTGAT 959
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 901 GTTTTAGCGACTTTCATTGGGATGAATCTT-GGCGGGTTTGATAAGACGTTGAACGTGAT 959
Query 960 GAACCGGGATTTCCCAGAGTTAAAGCTGAAGAAAACCGATTGTACCGAGATGAGATGGAT 1019
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GAACCGGGATTTCCCGGAGTTAAAGCTGAAGAAAACCGATTGTACCGAGATGAGATGGAT 1019
Query 1020 CGATTCGGTTCTGTTTTGGGCCGGTTTTCCGATTGGCACACCAACTTCTGTGTTACTAAA 1079
|||||||||||||||||||||||||| |||| |||| ||||| ||||||||| |||||||
Sbjct 1020 CGATTCGGTTCTGTTTTGGGCCGGTTATCCGGTTGGTACACCGACTTCTGTGCTACTAAA 1079
Query 1080 CCCTA-GAGTTACAAAAAAGTTGTTCATGAAACGGAAATCAGACTACGTGAAGCGTCCGA 1138
||||| | || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1080 CCCTACG-GTCACAAAAAAGTTGTTCATGAAACGGAAATCGGACTACGTGAAGCGTCCGG 1138
Query 1139 TTTCGAGAACCGGCCTCGGTTTGATACTCAAGAAATTGGTTGAGGTTG-ATAAAGTTGAA 1197
|||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||
Sbjct 1139 TTTCGAGAACCGGCCTCGGTTTGATACTCAAGAAATTGGTTGAG-TTGGAGAAAGTTGAA 1197
Query 1198 ATGAATTGGATTCCATATGGAGGAAGAATGGGGGAGATCCCGAGTTCGAGGACACCTTTC 1257
|||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1198 ATGAATTGGAATCCGTATGGAGGAAGAATGGGTGAGATCCCGAGTTCGAGGACACCTTTC 1257
Query 1258 CCACATAGAGAAGGAAATTTGTTCAACATTGAGTATATCATAGACTGGTCGGAAGCTGGA 1317
|||||||||| ||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1258 CCACATAGAGGAGGCAATTTGTTCAACATTGAATATATCATAGACTGGTCAGAAGCTGGA 1317
Query 1318 GATGACGTGGAAAAGGA-TCATTTGGCAAGT-GCAAGTGAGATGTACAAATTCATGACCC 1375
||| | ||||| ||| | | ||||||| | |||| |||| | || | |||||||||||
Sbjct 1318 GATAATGTGGAGAAGAAAT-ATTTGGCGC-TCGCAAATGAGTTTTATAGATTCATGACCC 1375
Query 1376 CATACGTGTCTAGTAATCCGAGGGAGGCGTTTTTGAATTACCGTGATCTCGACATAGGGT 1435
| ||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||
Sbjct 1376 CGTACGTGTCTAGTAATCCGAGGGAGGCGTTTTTGAATTACCGTGATATTGACATTGGGT 1435
Query 1436 CAGGTGTTAATTCCACGTACCAGGAAGGTAAAATCTATGGGGCGAAATATTTCAAAGACA 1495
|| ||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 1436 CAAGTGGTAATTCCACGTACGAGGAAGGTAAAATCTATGGGGCTAAATATTTCAAAGACA 1495
Query 1496 ATTTCGAAAGGTTAGTGGATATCAAAACCAAGTTCGATGAAATAAACTTTTGGAGGAACG 1555
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1496 ATTTCGAGAGGTTAGTGGATATCAAAACCAAGTTCGATGAGATAAACTTTTGGAGGAACG 1555
Query 1556 AACAAAGTATTCCGGT 1571
||||||||||||||||
Sbjct 1556 AACAAAGTATTCCGGT 1571
> AT1G30720.1 | Symbols: | FAD-binding Berberine family protein
| chr1:10898172-10899912 FORWARD LENGTH=1741
Length=1741
Score = 1524 bits (825), Expect = 0.0
Identities = 1329/1570 (85%), Gaps = 44/1570 (3%)
Strand=Plus/Plus
Query 29 TACTAATCTCAGTTTCAGTTGCAACTTCCCAGTCCCAAACCGATCCGGAGA-CTTTCCTC 87
|||| |||||| |||||| ||||||| || ||| |||||||| | | ||||||||
Sbjct 57 TACTGATCTCAACATCAGTTACAACTTCACAATCCGTGACCGATCC-AATAGCTTTCCTC 115
Query 88 CGATGTCTCGTA-AGAGAGGGATCAAACCC-GCAGGTTTTCATCTCCGACGTCACCTACA 145
|||||||||| | ||| | | | |||| || || | | ||||| ||| | ||||
Sbjct 116 CGATGTCTCG-ATAGACAACCAACGGACCCAACAAGTCCT-AACTCCGCCGTTGCTTACA 173
Query 146 TCCCATCAAACTCCTCTTTCACCACCGTCCTCCGCCGCCGCATACCTAACCTCCGTTTCG 205
||||| ||||||| ||||||||||| ||||||||| |||| |||||||||||||||||||
Sbjct 174 TCCCAACAAACTCTTCTTTCACCACTGTCCTCCGCAGCCGTATACCTAACCTCCGTTTCG 233
Query 206 ACAAACCCACCACCCCAAAACCCATCGCCATCATCAC-CCCTACCACATGGTCACACATT 264
|||||||||| || |||||||||||| || | | | || |||| ||| |||||| |
Sbjct 234 ACAAACCCACTACTCCAAAACCCATCTCCGTGGTGGCTGCC-GCCACGTGGACACACA-T 291
Query 265 TC-TCCGGC-GCTAGCTTGCGCACGCTTA-CTCCCTGTCCAAGTCAGAATCCGAAGCGGC 321
| | || | ||| |||||||| | | ||| || |||||||||| ||| |||| ||
Sbjct 292 ACAAGCTGCTG-TAGGATGCGCACG-TGAGCTCTCTCTCCAAGTCAGGATCAGAAGTGGT 349
Query 322 GGCCATGATTTCGAAGGACTCTCTTACACCTCCACCGCT-CCGTTCTTTG-TCATCGACT 379
||||| || |||||||||||||||||||| ||||||| | || ||||||| || |||||
Sbjct 350 GGCCACGACTTCGAAGGACTCTCTTACACTTCCACCG-TCCCTTTCTTTGTTC-TCGACA 407
Query 380 TGCTCAACTTCAAATCCGTTGACGTGAATCTCACGGAAG-GAACGGCTTGGGTTGATACC 438
|| || || ||| |||| ||||| |||||||| | || ||||||||||||||||| |
Sbjct 408 TGTTCGGTTTTAAAACCGTGGACGTAAATCTCACCG-AGAGAACGGCTTGGGTTGATTCT 466
Query 439 GGCGCCACAATCGGAGAGCTTTATTATAAAATCGCTGAGAAAAGCAATGTTCTTGGGTTT 498
|| || || ||||||||||||| |||| |||| ||||||| |||||||||||||| |||
Sbjct 467 GGTGCTACCCTCGGAGAGCTTTACTATAGAATCTCTGAGAAGAGCAATGTTCTTGGATTT 526
Query 499 CCGGCGGGTTTGTGTACTACATTGGGCGTTGGTGGACA-TATTAGCGGCGGAGGGTACGG 557
||||||||||||| ||| |||||||||||||||||||| | ||||||||||||| |||||
Sbjct 527 CCGGCGGGTTTGTCTACCACATTGGGCGTTGGTGGACACT-TTAGCGGCGGAGGATACGG 585
Query 558 -AACTATGATGAGAAAGTATGGTTTGTCGGTGGATAACGTTGTCGGCTCCAGGATCATCG 616
|| | ||||||||||||||||||||||||||||||||||| |||||||| ||||| | |
Sbjct 586 TAA-TCTGATGAGAAAGTATGGTTTGTCGGTGGATAACGTTTTCGGCTCCGGGATCGTTG 644
Query 617 ACTCTAACGGGAATACCTACTTCGATCGAGTGTCCATGGGGGAAGAGC-TTTTCTGGGCG 675
| || ||||| |||| || | |||||| || || ||||||||||| | |||| ||||||
Sbjct 645 ATTCGAACGGAAATATCTTCACCGATCGGGTTTCGATGGGGGAAGACCGTTTT-TGGGCG 703
Query 676 GTTCGAGGAGGTGGAGCCGCAAGTTTCGGTATCGTGATGGGATACAAAATCCGGTTGGTT 735
|||| |||||||| || || || | |||| | || | || ||||| |||| | | ||
Sbjct 704 ATTCGTGGAGGTGGTGCAGCGAGCTACGGTGTTGTCCTCGGCTACAAGATCCAGCTAGTA 763
Query 736 CCGGTGCCGGAGAAAGTAACGGTTTTTAGCGTTGGAAAAACCGTCGGAGAAGGAGCCGTT 795
|||||||| |||||||| |||||||||| || |||||||| ||||||||||||||||||
Sbjct 764 CCGGTGCCTGAGAAAGTTACGGTTTTTAAAGTCGGAAAAACTGTCGGAGAAGGAGCCGTT 823
Query 796 GATCTTATAACGAAGTGGCAGAATTTTTCTCACAGTACGGATCGGAATTTGTTCGTGAAG 855
|||||||||| ||||||||||| |||| |||| ||||||||||||||||||||||||| |
Sbjct 824 GATCTTATAATGAAGTGGCAGAGTTTTGCTCATAGTACGGATCGGAATTTGTTCGTGAGG 883
Query 856 CTGACTTTGACTTTGGTCAACGGTACAAAGCCGGGTGAAAAAACTGTTTTAGCGACTTTC 915
| ||||||||||| ||||||||||| ||||| ||||| || || |||||||||||||||
Sbjct 884 TTAACTTTGACTTTAGTCAACGGTACGAAGCCTGGTGAGAATACGGTTTTAGCGACTTTC 943
Query 916 ATTGGGATGAATTTAGGCGGGTTGGATAAGAC-GTTGAACGTGATGAACCGGGATTTCCC 974
||||||||| |||||||| ||| ||||||| | ||||| |||||||||||||||||||||
Sbjct 944 ATTGGGATGTATTTAGGCCGGTCGGATAAG-CTGTTGACCGTGATGAACCGGGATTTCCC 1002
Query 975 AGAGTTAAAGCTGAAGAAAACCGATTGTACCGAGATGAGATGGATCGATTCGGTTCTGTT 1034
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 GGAGTTGAAGCTGAAGAAAACCGATTGTACCGAGATGAGATGGATCGATTCGGTTCTGTT 1062
Query 1035 TTGGGCCGGTTTTCCGATTGGCACACCAACTTCTGTGTTACTAAA-CC-CTAGAGTTACA 1092
||||| || || |||| |||| ||||| ||||||||| ||||||| || |||| | ||
Sbjct 1063 TTGGGACGATTATCCGGTTGGTACACCGACTTCTGTGCTACTAAATCCGCTAG--TCGCA 1120
Query 1093 AAAAAGTTGTTCATGAAACGGAAATCAGACTACGTGAAGCGTCCGATTTCGAGAACCGGC 1152
|||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||
Sbjct 1121 AAAAAGTTGTTCATGAAACGAAAATCGGACTACGTGAAGCGTCTGATTTCGAGAACCGAT 1180
Query 1153 CTCGGTTTGATACTCAAGAAATTGGTTGAGGTTGATAAAGTTGAAATGAATTGGATTCCA 1212
|||||||||||||||||||||||||| |||||||| |||||| |||||||||||| |||
Sbjct 1181 CTCGGTTTGATACTCAAGAAATTGGTAGAGGTTGAGAAAGTTAAAATGAATTGGAATCCG 1240
Query 1213 TATGGAGGAAGAATGGGGGAGATCCCGAGTTCGAGGACACCTTTCCCACATAGAGAAGGA 1272
||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1241 TATGGAGGAAGGATGGGTGAGATCCCGAGTTCGAGGACACCATTCCCACATAGAGCAGGC 1300
Query 1273 AATTTGTTCAACATTGAGTATATCATAGACTGGTCGGAAGCTGGAGATGACGTGGAAAAG 1332
||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| |||
Sbjct 1301 AATTTGTTCAACATTGAGTATATCATAGACTGGTCAGAAGCTGGAGATAATGTGGAGAAG 1360
Query 1333 GA-TCATTTGGCAAGT-GC-AAGTGAGATGT-ACAAATTCATGACCCCATACGTGTCTAG 1388
| | |||||||| | || || ||| || | | | |||||||||||| |||||||||||
Sbjct 1361 AAAT-ATTTGGCAC-TCGCGAA-TGA-ATTTTATAGATTCATGACCCCGTACGTGTCTAG 1416
Query 1389 TAATCCGAGGGAGGCGTTTTTGAATTACCGTGATCTCGACATAGGGTCAGGTGTTAATTC 1448
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||
Sbjct 1417 TAATCCGAGGGAGGCGTTTTTGAATTACCGTGATCTTGACATAGGGTCAAGTGTTAAGTC 1476
Query 1449 CACGTACCAGGAAGGTAAAATCTATGGGGCGAAATATTTCAAAGACAATTTCGAAAGGTT 1508
||||||||||||||||||||||| ||||| ||||||||||| || |||||||| || ||
Sbjct 1477 TACGTACCAGGAAGGTAAAATCTACGGGGCTAAATATTTCAAGGAGAATTTCGAGAGATT 1536
Query 1509 AGTGGATATCAAAACCAAG-TTCGATGAA-ATAAACTTTTGGAGGAACGAACAAAGTATT 1566
||||||||| ||||||| | || |||| | ||||||||||| ||||||||||| |||
Sbjct 1537 AGTGGATATTAAAACCACGATT-GATGCGGA-AAACTTTTGGAAAAACGAACAAAGCATT 1594
Query 1567 CCGGTTCGAA 1576
|||||| |||
Sbjct 1595 CCGGTTAGAA 1604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78061847475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5