BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473306
Length=2113
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30755.1 | Symbols: | Protein of unknown function (DUF668) ... 3173 0.0
> AT1G30755.1 | Symbols: | Protein of unknown function (DUF668)
| chr1:10905817-10908892 REVERSE LENGTH=2141
Length=2141
Score = 3173 bits (1718), Expect = 0.0
Identities = 1980/2106 (94%), Gaps = 19/2106 (1%)
Strand=Plus/Plus
Query 21 ttgattcttttgggtcatttgatctct-tt-tgcttttttcCTCTAAAAATTAGAGCTTT 78
|||| |||||||||||||||| ||||| || |||| ||||||||| || |||||||||||
Sbjct 30 TTGAATCTTTTGGGTCATTTGGTCTCTCTTCTGCTGTTTTCCTCTGAAGATTAGAGCTTT 89
Query 79 ATCGGAGAGATAACTTGTTGGAGAAGAAAAAATGGGAGGTGCTTGTTCTTGTGTATACAA 138
| | |||||||||||||||||||||| | |||||||||||| |||||||||||||| |||
Sbjct 90 ACCAGAGAGATAACTTGTTGGAGAAG-ACAAATGGGAGGTGTTTGTTCTTGTGTATTCAA 148
Query 139 AGATGGTGAT---AAGAAGAAGTTGAGATCAAAC---GATGATAAGTCAAGAGGGTTTTC 192
||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 149 AGATGATGATAAGAAGAAGAAGTTGAGATCAAACGATGATGATAAGTCAAGAGGGTTTTC 208
Query 193 TGGGAAACTGAAGTCGATGAGGAGAAG-AAGAACCTCTGATTCTTATTATTCAGATCATT 251
||||||||| ||||| ||||| ||||| || ||||||||||||||||||||||||| |||
Sbjct 209 TGGGAAACTTAAGTCTATGAGAAGAAGTAA-AACCTCTGATTCTTATTATTCAGATAATT 267
Query 252 ACGGAAGCTCGAGGCGGAAAAGTTCTAAGCCTGATGAGGTTGTTTTCAACTTTTCCGGTG 311
||||| |||| || ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 268 ACGGAGGCTCAAGACGGAAAAGTTCTAAGCCTGATGAGGTTGTTTTCAACTTTTCTGGCG 327
Query 312 AACTCGGTCCGATGCCTCCGTTAAGGAACGATTCTACCAAGTTTATGCAGAGGAACTCGT 371
| || |||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 328 AGCTTGGTCCGATGCCTCCATTAAGGAACGATTCCACCAAGTTTATGCAGAGGAACTCGT 387
Query 372 TTATGGGACGGGCTGGGGTTATGGGGTTAGAGAAGGCGGTTGAAGTTCTAGACACGCTGG 431
||||||||||||||||||| |||||| ||||||| || |||||||||||||||||||| |
Sbjct 388 TTATGGGACGGGCTGGGGTAATGGGGCTAGAGAAAGCTGTTGAAGTTCTAGACACGCTCG 447
Query 432 GGAGCAGCATGTCTCGTATGAACCCGAGCAGCGCGTATCTCTCTGGTGTTACATCGTCCC 491
||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 448 GGAGCAGCATGACTCGTATGAATCCGAGCAACGCGTATCTCTCTGGTGTTACATCGTCCC 507
Query 492 GTGGTGGCAAAGTCACTATATTGGCCTTTGAAGTGGCCAACACAATAGCCAAAGGTGCTG 551
||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||
Sbjct 508 GTGGTGGCAAAGTCACTATATTGGCTTTTGAAGTGGCCAATACTATTGCCAAAGGTGCTG 567
Query 552 CTTTGCTACAATCTTTGTCTGAAGAGAATCTCAAGTTTATGAAGAAAGATATGTTGCGA- 610
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 568 CTTTGCTGCAATCTTTGTCTGAAGAGAATCTCAAGTTCATGAAGAAAGATATGTTGC-AT 626
Query 611 TCCAAGGGAGTTAAGAAGTTGGTTTCTACGGATACCGCAGAGTTGCAAATTCTTGCTGCT 670
||| ||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 627 TCCGAGGAAGTCAAGAAGTTGGTTTCTACGGATACCACAGAGTTGCAAATTCTTGCTGCT 686
Query 671 TCTGACAAAAGGGAGGAACTCGATCTTTTTTCTGGAGAGGTTATCAGGTTTGGCAATATG 730
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 687 TCTGACAAAAGGGAGGAACTCGATCTTTTCTCTGGAGAGGTTATCAGGTTTGGTAATATG 746
Query 731 TGCAAAGATATGCAGTGGCACAATCTCGATCGATATTTTATGAAGCTTGACACAGAGAAC 790
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 TGCAAAGATCTGCAGTGGCACAATCTCGATCGATATTTTATGAAGCTTGACACAGAGAAC 806
Query 791 TCACAGCATAAACTGCTCAAAGATGAGGCAGAGGCAAAGATGCAAGAGCTCGTCACTCTT 850
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 807 TCACAGCATAAACTGCTCAAAGATGATGCAGAGGCAAGGATGCAAGAGCTCGTCACTCTT 866
Query 851 GCCCGATTCACTTCTGAGTTATATCACGAGTTGCAAGCTTTGGATAGGTTTGAACAAGAT 910
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 GCCAGAATCACTTCTGAGTTATATCACGAGTTGCAAGCTTTGGATAGGTTTGAACAAGAT 926
Query 911 TACAGGAGAAAGCTTGCAGAAATAGAGTCTTTAAACCTCCCTCGGAGAGGAGAGGGTATT 970
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 927 TACAGGAGAAAGCTTGCAGAAGTAGAGTCTTTAAACCTCCCTCGGAGAGGAGAGGGTATC 986
Query 971 GTCATCTTACAAAATGAACTAAAACAACAGAGGAAACTCGTGAAGAGCTTACAGAAGAAA 1030
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 987 GTCATCTTACAAAATGAACTAAAACAACAGAAGAAACTCGTGAAGAGCTTACAGAAGAAA 1046
Query 1031 TCGCTCTGGTCCCAGAATCTGGAAGAGATAATTGAGAAGCTTGTGGATGTTGTTTGCTAT 1090
|| || |||||||||||||||| |||||||||||||||||||||||||||||| | |||
Sbjct 1047 TCCCTATGGTCCCAGAATCTGGCAGAGATAATTGAGAAGCTTGTGGATGTTGTAAGTTAT 1106
Query 1091 ATACGGCAGACGATTGTGGAAGTTTTTGGCAACAACGGGT-TAAAAGACAATGAAGGGAA 1149
||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |
Sbjct 1107 ATACGGCAGACGATTGTGGAAGTTTTTGGCAACAA-TGGTCTAAGAGACAATGAAGGGGA 1165
Query 1150 GCAGGGAAGAGAACGATTAGGTGAAGCCGGTCTTTCGTTACACTATGCTAATTTAATCCA 1209
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1166 GCAGGGAAGAGAACGATTAGGTGAAGCCGGTCTTTCGTTACACTATGCTAATCTAATACA 1225
Query 1210 ACAAATCGATAGTATTGCGTCTCGACCATCATCACTTCCTTCTAATGTACGGGACACGCT 1269
||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1226 ACAAATCGATAATATTGCGTCTCGACCATCGTCACTTCCTTCTAATGTAAGGGACACGCT 1285
Query 1270 GTACAATGCATTACCTGCTACCGTCAAGACAGCTCTTCGTCCTCGGTTACAAACTCTTGA 1329
||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1286 GTACAATGCATTACCCGCTACTGTCAAGACAGCTCTTCGTCCTCGGCTACAAACTCTTGA 1345
Query 1330 TCCGGAGGAAGAGCTTTCAAT-CTCTGAGATCAAAGCTGAAATGGAGAAGTCGCTTCAAT 1388
|| |||||||||||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 1346 TCAGGAGGAAGAGCTTTCAGTAC-CTGAGATCAAAGCTGAAATGGAGAAGTCGCTTCAAT 1404
Query 1389 GGCTTGTCCCGTTCGCCGAAAACACTACCAAAGCACATCAAGGCTTCGGATGGGTAGGTG 1448
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1405 GGCTTGTCCCGTTCGCTGAAAACACCACCAAAGCACATCAAGGCTTCGGATGGGTAGGTG 1464
Query 1449 AATGGGCAAATTCAAGGATAGAGTTTGGGAAAGGAAAAGGAAAAGGCGAGAACAATGGGA 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1465 AATGGGCAAATTCAAGGATAGAGTTTGGGAAAGGAAAAGGAAAAGGCGAGAACAACGGGA 1524
Query 1509 ATCCAACACGACTTCAGACGCTTCATCACGCGGATAAACCAACAGTTGATTCATATGTAC 1568
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1525 ATCCAACACGACTTCAGACGCTTCATCATGCGGATAAACCAATAGTTGATTCATATGTAC 1584
Query 1569 TCGAACTCGTTGTATGGCTTCATCGACTAATGAAGTCATCTAAGAAACGAGTTCAAGGAG 1628
|||||||||||||||||||||||||||||||||||||||| |||||||| | ||| || |
Sbjct 1585 TCGAACTCGTTGTATGGCTTCATCGACTAATGAAGTCATCAAAGAAACGTGCTCACGGCG 1644
Query 1629 TTAAGCTTCAAGAAACCAACCATGTCTCTCCACCCAACAAGATTACCATCTCCAATACGC 1688
|||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||
Sbjct 1645 TTAAGCTTCAAGAAACCAACCATGTCTCTCCACCCAACAACAGAACCATCTCCAACACGC 1704
Query 1689 AACTATCCCTCTCCCCTGACTTCACCTATAAAAACCAACTCTCTCTAGAAGACAGGTTGT 1748
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1705 AACTATCACTCTCCCCTGACTTCACCTACAAAAACCAGCTCTCTCTAGAAGACAGGTTGT 1764
Query 1749 TGTTAGACAGAGTCCAAAGCATAAGATTCGGGCCTAATCTAAGTAAGAGTCAAGAATTAG 1808
||||||||||||||||||| |||||||| || || |||||||||||||||||||| ||||
Sbjct 1765 TGTTAGACAGAGTCCAAAGTATAAGATTTGGTCCAAATCTAAGTAAGAGTCAAGAGTTAG 1824
Query 1809 TCGGCTTGAAGAAGAACAAGAAAGGAATCAAGATTTGGGCACTAAGTAGAAGTACAGGAA 1868
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1825 TCGGCTTGAAGAAGAACAAGAAAGGATTCAAGATTTGGGCACTGAGTAGAAGTACAGGAA 1884
Query 1869 ACTCTCCAAAAGTTGATCTTTCAGATAAGAACTCTTCTAGTGATTTGGATGTTCTTGATG 1928
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1885 ACTCTCCAAAAGTTGATCTTTCAGATAAGAACTCTTCTAGTGATTTGGATGTCCTTGATG 1944
Query 1929 GTTTGGATTTCGCTTTCCATTAGGCGCAACGTGTTCGGTTTGAGAACCGGTTTTTGATCC 1988
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1945 GTTTGGATTTCGCTTTCCAATAGGCGCAACACGTTCGGTTTGAGAACCGGTTTTTGATCA 2004
Query 1989 A-TTCTTCTGTATTTATAGATAAATTCTATCATTCTTGTATATAAAACAAAGCTTATAAG 2047
| |||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct 2005 AATTCTTCTGTATTTATAGATAAATTCTATCATTCTTGTATATAAA-CACAGCATATAAG 2063
Query 2048 CACAAAACAGTGATGTAGTAGATGATACAAAAACAAAGACAGTATTTGGTTGGTTTAGTT 2107
||||||||||||||||| ||| ||||||| ||||||||||| ||| ||||||||||||||
Sbjct 2064 CACAAAACAGTGATGTAATAGTTGATACAGAAACAAAGACACTATATGGTTGGTTTAGTT 2123
Query 2108 GGATTT 2113
||||||
Sbjct 2124 GGATTT 2129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104768537415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5