BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473307
Length=1808
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30760.1 | Symbols: | FAD-binding Berberine family protein ... 2756 0.0
AT2G34790.1 | Symbols: MEE23, EDA28 | FAD-binding Berberine fam... 1166 0.0
> AT1G30760.1 | Symbols: | FAD-binding Berberine family protein
| chr1:10918278-10920677 FORWARD LENGTH=1884
Length=1884
Score = 2756 bits (1492), Expect = 0.0
Identities = 1707/1810 (94%), Gaps = 18/1810 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTTTACGTTAATAATTATTAACGCAAACGCGTTTCTCGTGACTTTACTATTACTA 60
||||||||| | || |||| | |||| ||||||||||||| || || |||||||||||
Sbjct 44 ATGGCGTTT--G-TATTAATGAATAACACAAACGCGTTTCTTGTAACGCTACTATTACTA 100
Query 61 TCTCTTTCTTACATTCCATTGTCTTCTTCCACTATGCAACAAGACTTCGTGATGTGTCTA 120
|| |||||||||||||||||||||| |||||| || ||||||||||||||||||||||||
Sbjct 101 TCCCTTTCTTACATTCCATTGTCTTTTTCCACAATCCAACAAGACTTCGTGATGTGTCTA 160
Query 121 GTCGACAACTCCGACGCTTCGTTTCCAATGGACTCGTCGTTCTTCACTCACGACCTAAAC 180
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 161 GTCGACAACTCCGACGCTTCCTTTCCAATGGACTCATCGTTCTTCACTCACGACCTAAAC 220
Query 181 GCATCTTCCTTTAAACTGGCGTTAGAGACGTCAGCTCAAAATCTCCGTTACTTGATGCCA 240
|| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 221 GCCTCTTCCTTTAAACTCGCCTTAGAGACGTCAGCTCAAAATCTCCGTTACTTGATGCCT 280
Query 241 TCAAATCCTAAGCCAGAGTTCATTTTCGAGCCGCTTTACGAAACGCACGTTCAAGCCGCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 281 TCAAATCCTAAGCCAGAGTTCATTTTCGAGCCGCTTTACGAAACGCACGTTCAGGCCGCC 340
Query 301 GTTCTTTGCGCCAAGAAGTTGAAGCTTCACTTGCGGCTAAGAAGCGGTGGTCATGACTAC 360
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 341 GTTCTTTGCGCCAAGAAGCTGAAGCTTCACTTGCGGTTAAGAAGCGGTGGTCATGACTAC 400
Query 361 GAAGGCCTCTCTTACGTCTCGGAGATGGAAACTGCGTTTGTGATCGTCGACTTGTCGAAA 420
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 401 GAAGGCCTCTCTTACGTCTCGGAGATGGAAACGGCGTTTGTGATCGTCGACTTGTCCAAG 460
Query 421 CTTAGACAGATCAGTGTTGATATAGAAAGTAACAGCGCGTGGGTTCACGCGGGTGCTTCT 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 461 CTTAGACAGATCAGTGTTGATATAGAAAGTAACAGCGCGTGGGTTCACGCTGGTGCTTCT 520
Query 481 ATTGGAGAGGTTTATTACAGGATCCAAGAGAAAAGCAAAATCCATGGTTTTCCGGCGGGT 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 521 ATTGGAGAGGTTTATTACAGGATCCAAGAGAAAAGCAAAATCCACGGTTTTCCGGCGGGT 580
Query 541 TTATGCACCAGCCTAGGCATCGGCGGTCACATAATCGGCGGAGCCTATGGCTCAATGATG 600
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 581 TTATGCACCAGCCTAGGCATCGGCGGTCACATAATCGGCGGAGCCTATGGTTCAATGATG 640
Query 601 CGTAAGTTTGGTCTCGGAGCCGATAACGTCCTCGACGCCAGAATCGTTGACGCTGACGGC 660
|||||||||||||||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct 641 CGTAAGTTTGGTCTCGGAGCTGATAACGTCCTCGATGCTAGGATCGTTGACGCTGACGGC 700
Query 661 AAAATCTTGAATCGCGCGGCGATGGGAGAAGACGTTTTCTGGGCGATACGAGGCGGAGGC 720
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 701 AAAATCTTGAATCGCGCGGCGATGGGAGAAGACGTTTTCTGGGCGATTCGAGGAGGTGGA 760
Query 721 GGAGGAAGCTTCGGCGTTATTCTTGCCTGGAAAATCAAA-CTCGTTCCGGTGCCGGAGGT 779
||||||||||||||||| || |||||||||||||| ||| |||||||||||||| ||| |
Sbjct 761 GGAGGAAGCTTCGGCGTAATACTTGCCTGGAAAAT-AAAGCTCGTTCCGGTGCCAGAGAT 819
Query 780 CGTTACGGTGTTCACTGTCACGAGGACGCTTGAGCAAGACGGAACTAAGCTTTTGTACAA 839
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 TGTTACGGTGTTTACCGTCACGAGGACGCTTGAGCAAGACGGAACTAAGCTTTTGTACAA 879
Query 840 GTGGCAACAAGTTGCTGATAAGCTTGACGAAGATCTCTTTATCCGTGTGATTATTCAGCC 899
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 880 GTGGCAACAAGTCGCTGATAAGCTCGACGAAGATCTCTTTATCCGTGTGATTATTCAGCC 939
Query 900 GACGAGCAAAACTCCGAAGAGCAAAGAAAGAACTATCTCAACTTCGTACCAAGGCCAATT 959
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 940 GACGAGCAAAACTCCGAAGAGCAAAGAAAGAACTATCTCGACTTCGTACCAAGGCCAATT 999
Query 960 TCTCGGCGACGCAAATAGGTTGTTGCAGGTGATGCAAAGGAGTTTCCCACAGCTTGGACT 1019
|||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 TCTCGGCGACGCTAATCGTTTGTTGCAGGTGATGCAAAGGAGTTTCCCACAGCTTGGACT 1059
Query 1020 AACGAAGAAAGATTGTTTAGAGACAAGCTGGATCAAATCGGTAATGTACATTGCGGGTTT 1079
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1060 AACGAAGAAAGATTGTTTAGAGACAAGCTGGATCAAATCGGTGATGTACATTGCAGGTTT 1119
Query 1080 TCCAAGCACTGCGCCATCGGAAGCTTTACTCGATGGGAAATCGTTGTTCAAGAATTACTT 1139
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 TCCAAGCACTGCCCCATCAGAAGCTTTACTCGATGGGAAATCGTTGTTCAAGAATTACTT 1179
Query 1140 CAAAGCCAAGTCAGACTATGTGGAAGAGCCAATTCCAATAGAAGGATTAGAAGGGTTGTG 1199
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1180 CAAAGCCAAGTCAGACTATGTGGAAGAGCCAATTCCAGTAGAGGGATTAGAAGGGTTGTG 1239
Query 1200 GGAAAAGCTTCTAGAAGAGGACTCACCATTGACTATATGGAATCCTTATGGAGGAATGAT 1259
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 GGAGAAGCTTCTAGAAGAGGACTCACCATTGACTATATGGAATCCTTATGGAGGAATGAT 1299
Query 1260 GGCGAAAATTCCCGAGACAGAGACACCTTTCCCACATAGGAGTGGGACATTGTTCAAGAT 1319
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 GGCAAAAATTCCCGAGACAGAGACACCTTTCCCACATAGGAGTGGGACATTGTTCAAGAT 1359
Query 1320 CCAATGGTTGACTTTATGGCAAGATGGGAAAGTGAGCGAGGCGAAGCATATGGATTGGAT 1379
|||||| ||||||| ||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1360 ACAATGGCTGACTTTGTGGCAAGATGGGAAAACAAGCGAGGCGAAGCATATGGGGTGGAT 1419
Query 1380 GAGGGAAATGTATAGTTACATGGAGCAGTATGTGTCGAAAAGCCCGAGATCCGCGTATGT 1439
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1420 GAGGGAAATGTATAGTTACATGGAGCAGTATGTATCGAAAAGCCCGAGATCCGCGTACGT 1479
Query 1440 GAACTATAGAGATCTTGATTTGGGGAGGAATGGTAAAGGGAGTGATGCAAGAGAATGGGG 1499
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1480 GAACTATAGAGATCTTGATTTGGGGATGAATGGTAAAGGGAGTGATGCAAGAGAATGGGG 1539
Query 1500 GAATAAATATTTCAAGGGTAATTTTGAAAGGTTGGTGCAGATTAAAGCTACGTTTGATCC 1559
||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1540 GAATAGGTATTTCAAGGGTAATTTTGAAAGGTTGGTGGAGATTAAAGCTAAGTTTGATCC 1599
Query 1560 TGAGAAtttttttAGCCATGAACAAAGTATTCCTACGGAACTTGAGTGAATTTGGAGGTA 1619
||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1600 TGAGAATTTCTTTAGACATGAACAAAGTATTCCTACAGAACTTGAGTGAATTTGGAGTTA 1659
Query 1620 GACAATAATAAGAgtgtg-tttaagatttgtcttagaaaagacttgttacttgtgttttt 1678
||||| |||||||||||| |||||||||| |||||| |||||||||||||||||||||||
Sbjct 1660 GACAAGAATAAGAGTGTGGTTTAAGATTTCTCTTAGGAAAGACTTGTTACTTGTGTTTTT 1719
Query 1679 gtgtctttttgtttttAAACATGATCAACACACTTGTATTTCAATATTGTTATCCAATCT 1738
||| ||||| ||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1720 GTG-CTTTT-------AAACATGGCCAACACACTTGTATTTCAAAATTGTTATCCAATCT 1771
Query 1739 AATCCCTTATGAGTTCTTAAAATTAAGTAATGGCAAATTTGGCTAAACCAAATCAAATCA 1798
||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1772 AATCCCTTATGAGGTCTTAGAA----GTAATGGCAAATTTGGCTAAACCAAATCAAATCA 1827
Query 1799 AATTCGCCTA 1808
||| |||||
Sbjct 1828 TATTTGCCTA 1837
> AT2G34790.1 | Symbols: MEE23, EDA28 | FAD-binding Berberine family
protein | chr2:14673840-14677270 REVERSE LENGTH=1790
Length=1790
Score = 1166 bits (631), Expect = 0.0
Identities = 1261/1557 (81%), Gaps = 76/1557 (5%)
Strand=Plus/Plus
Query 74 TTCCATTGTCTTCTTCCACTATGCAACAAGACTTCGTGATGTGTCTAGTCGACAACTCCG 133
||||||||||||| ||||| | |||||||| ||||||| ||| || |||||||||||||
Sbjct 98 TTCCATTGTCTTCCTCCACGCTACAACAAGATTTCGTGAAGTGCCTTGTCGACAACTCCG 157
Query 134 ACGCT-TCGTTTCCAATGGAC-TCGTCGTTCTTCACTCA-C-GACCTAAACGCAT-CTTC 188
||| | || || || || || ||||||| || |||| | |||| |||||| | |||
Sbjct 158 ACG-TCTCCTTCCCCAT-AACGGCGTCGTT-TT-TCTCACCGGACCAAAACGC-TACTTT 212
Query 189 CTTTAAACTGGCG-TTAGAGA-CGTCAGCTCAAAATCTCCGTTACTTGATGCCATCAAAT 246
|||||| || | || || | | | || || |||||||||||||||| ||| |||||
Sbjct 213 GTTTAAAGAGGAGCTT-GA-ATCAACGGCACAGAATCTCCGTTACTTGACGCCGTCAAAC 270
Query 247 CCTAAGCCAGAGTTCATTTTCGAGCCGCTT-TACGAAACGCACGTTCAAGCCGCCGTTC- 304
|| ||||| | |||||| |||||||| || ||||| ||||| || ||||| | || ||
Sbjct 271 CCGAAGCCCGTGTTCATATTCGAGCC-TTTGTACGAGACGCATGTCCAAGCAG-CGGTCG 328
Query 305 TTTGCGCCAAGAAG-TTGAAGCTTCACTTGCGGCTAAGAAGCGGTGGTCATGACTACGAA 363
| || ||||||||| || |||||||| | |||||| | ||||||||||| |||||||||
Sbjct 329 TGTGTGCCAAGAAGCTT-CAGCTTCACCTCCGGCTACGTAGCGGTGGTCACGACTACGAA 387
Query 364 GGCCTCTC-TTACGTCT-CGGA-GATGGAAACTG-CGTTTGTGATCGTCGACTTGTCGAA 419
|| ||||| || || | | || || ||||| | ||||||||||||| || ||||||||
Sbjct 388 GGGCTCTCGTT-TGT-TGCCGAGGA-CGAAAC-GCCGTTTGTGATCGTTGATTTGTCGAA 443
Query 420 ACTTAGACA-GATCAGTGTTGATATAGAAAGTAACAGCGCGTGGGTTCACGCGGGTGCTT 478
|||||||| | | | |||||| | || |||||||| ||||||| ||| || ||||||
Sbjct 444 GCTTAGACAGGTTGA-CGTTGATTTGGACAGTAACAGTGCGTGGGCTCATGCTGGTGCTA 502
Query 479 CTATTGGAGAGGTTTATTACAGGATCCAAGAGAAAAGCAAAATCCATGGTTTTCCGGCGG 538
| || ||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
Sbjct 503 CCATCGGAGAGGTTTATTACAGGATCCAAGAGAAAAGCCAAACCCATGGTTTTCCGGCCG 562
Query 539 GTTTATGCACCAGCCTAGGCATCGGCGGTCACATAATCGGCGGAGCCTATGGCTCAATGA 598
|||||||| | ||||| |||||||| || ||| || |||| ||||| || || || ||||
Sbjct 563 GTTTATGCTCAAGCCTTGGCATCGGTGGCCACTTAGTCGGTGGAGCGTACGGTTCCATGA 622
Query 599 TGCGTAAGTTTGGTCTCGGAGCCGATAACGTCCTCGACGCCAGAATCGTTGACGCTGACG 658
|| | ||||| |||||||| || || || |||||||||||||||||||| ||||| |||
Sbjct 623 TGAGGAAGTTCGGTCTCGGCGCTGACAATGTCCTCGACGCCAGAATCGTCGACGCCAACG 682
Query 659 GCAAAATCTT-GAATCGCGCGGCGATGGGAGAAGACGTTTTCTGGGCGATACGAGGCGGA 717
|| ||||| | || ||||||||| |||||||||||||| ||||||||||| || |||||
Sbjct 683 GCCAAATCCTCGA-TCGCGCGGCAATGGGAGAAGACGTCTTCTGGGCGATTCGCGGCGGC 741
Query 718 GGCGGAGGAAGCTTCGGCGTTATTCTTG-CCTGGAAAATCAAACTCGTTCCGGTGCCGGA 776
||||| || ||||||||||| || ||| ||||||| || || ||||| || || ||||
Sbjct 742 GGCGGTGGTAGCTTCGGCGTGATA-TTGGCCTGGAAGATTAAGCTCGTCCCCGTTCCGGC 800
Query 777 GGTCGTTACGGTGTTCACTGTCACGAGGACGCTTGAGCAAGACGGAACTAA-GCTTTTGT 835
| ||||||||| ||||| ||||||| |||||||||||||||||||||||| | |||| |
Sbjct 801 GACCGTTACGGTATTCACAGTCACGAAGACGCTTGAGCAAGACGGAACTAAAG-TTTTAT 859
Query 836 ACAAGTGGCAACAAGTTGCTGATAAGCTTGACGAAGATCTCTTTATCCGTGTGATTATT- 894
|||| ||| ||||| | ||||||||||||||||| |||||||| || || || ||||||
Sbjct 860 ACAAATGGGAACAAATCGCTGATAAGCTTGACGATGATCTCTTCATTCGCGTCATTATTT 919
Query 895 CAGCCGACGAGCAAAACT-CCGAAGAGCAAAGAAA--GAACTATCTCAACT-TCGTACCA 950
|| ||| | || ||||| || || | | |||| |||| ||||| | | ||||||||
Sbjct 920 CA-CCGGCCAGTAAAACCACC-AA-ACCGG-GAAATCGAACCATCTCGA-TGTCGTACCA 974
Query 951 AGGC-CAATTTCTCGGCGACGCAAATAGGTTGTTGCAGGTGATGCA-AAGGAGTTTCCCA 1008
|| | || |||||||| ||| | ||| || | |||||||||||||| ||| ||||||||
Sbjct 975 AG-CTCAGTTTCTCGGAGACTCCAATCGGCTCTTGCAGGTGATGCAGAAG-AGTTTCCCT 1032
Query 1009 CAGCTT-GGACTAACGAAGAAAGATTGTTTAGAGACAAGCTGGATCAAATCGGTAATGTA 1067
|| || ||||| |||||||| || || ||| | |||||||||||||| || |||||
Sbjct 1033 GAG-TTAGGACTGACGAAGAAGGACTGCACAGAAATGAGCTGGATCAAATCAGTGATGTA 1091
Query 1068 CATTGCGGGTTTTCCAAGCACTGC-GCCATCGGAAGCTTTACTCGATGGGAAATCGTTGT 1126
|||||| |||||||||| || ||| || | ||||||||||||| | || ||||| ||||
Sbjct 1092 CATTGCAGGTTTTCCAAACAGTGCAGC-ACCGGAAGCTTTACTAGCCGGAAAATCATTGT 1150
Query 1127 TCAAGAATTACTTCAAAGCCAAGTCAGACTATGTGGAAGAGCCAATTCCAATAGAAGGAT 1186
|||||||| ||||||||||||||||||||| |||| |||||||||||||| ||||||| |
Sbjct 1151 TCAAGAATCACTTCAAAGCCAAGTCAGACTTTGTGAAAGAGCCAATTCCAGTAGAAGGTT 1210
Query 1187 TAGAAGGGTTGTGGGAAAAGCTTCTAGAAGAGGACTCACCATTGACTATATGGAATCCTT 1246
||||||| || ||||||| | |||||||||| || ||||| || || |||||||| ||||
Sbjct 1211 TAGAAGGATTATGGGAAAGGTTTCTAGAAGAAGATTCACCGTTAACGATATGGAACCCTT 1270
Query 1247 ATGGAGGAATGATGGCGAAAAT-TCCCGAGACAGAGACACCTTTCCCACATAGGAGTGGG 1305
| |||||||||||| ||| || ||| ||| |||||| ||||||||| ||||||| |||
Sbjct 1271 ACGGAGGAATGATGTCGAGGATCTCC-GAGTCAGAGATACCTTTCCCTCATAGGAACGGG 1329
Query 1306 ACATTGTTCAAGATCCAATGGTTGA-CTTTATGGCAAGATGGGAAAGTGAGCGAGGCGAA 1364
|||||||||||||| || ||| | | | ||||||||||||||||||||||||| ||
Sbjct 1330 ACATTGTTCAAGATTCAGTGGCTAAGCACG-TGGCAAGATGGGAAAGTGAGCGAGGA-AA 1387
Query 1365 G-CATATGGATTGGATGAGGGAAATGTATAGTTACATGGAGCAGTATGTGTCGAA-AAGC 1422
| |||||| | ||||| ||||| |||||||||||||||||||||||||||||||| || |
Sbjct 1388 GGCATATGAAGTGGATTAGGGAGATGTATAGTTACATGGAGCAGTATGTGTCGAAGAA-C 1446
Query 1423 CCGAGATCCG-CGTATGTGAACTATAGAGATCTTGATTTGGGGAGGAATGGTAAAGG-GA 1480
|||||| | | |||||||||| || || |||||||||||||||| |||| || || ||
Sbjct 1447 CCGAGA-CAGGCGTATGTGAATTACAGGGATCTTGATTTGGGGACTAATG--AA-GGAGA 1502
Query 1481 G--TGATGCAAGAGAATGGGG-GAATAAATATTTCAA-GGGTAATTTTGAAAGGTTGGTG 1536
| |||||| ||||| ||||| | ||| |||| ||| ||| ||||| || |||||||||
Sbjct 1503 GACTGATGCTAGAGAGTGGGGTGC-TAAGTATTACAAAGGG-AATTTCGAGAGGTTGGTG 1560
Query 1537 CAGATTAAAGCT-ACGTTTGATCCTGAGAAtttttttAGCCATGAACAAAGTATTCC 1592
||||||| | | | |||||||||||| ||||| || || |||||||| ||| ||||
Sbjct 1561 AAGATTAAGGGTGA-GTTTGATCCTGATAATTTCTTCAGGCATGAACAGAGTGTTCC 1616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89457371190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5