BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473308
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30780.1 | Symbols: | F-box associated ubiquitination effec... 632 2e-180
AT1G32660.1 | Symbols: | F-box and associated interaction doma... 134 3e-30
> AT1G30780.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:10923919-10926561 REVERSE LENGTH=1449
Length=1449
Score = 632 bits (342), Expect = 2e-180
Identities = 418/455 (92%), Gaps = 4/455 (1%)
Strand=Plus/Plus
Query 1 ATGGCATCACTTTCACTTGTGCTTAGATACGTCGTCGTTTTAACTTTCTTCATACTCGAA 60
|||||||||||||||||||| ||||||||||||||| |||| | ||||||||||||| ||
Sbjct 1 ATGGCATCACTTTCACTTGTTCTTAGATACGTCGTCTTTTTGAGTTTCTTCATACTCCAA 60
Query 61 AACCCCAAGGAAACATTTTCTTCGCGACTAGC-GAGACCCCCA-GCTAAAGTAGCTCAGA 118
|| ||||| |||||||||||||| |||||| | |||| |||| ||||||||||||||||
Sbjct 61 AAGCCCAAAGAAACATTTTCTTCACGACTA-CAGAGA-TCCCACGCTAAAGTAGCTCAGA 118
Query 119 TTGGAGCCGATGATTATCCATCTTCCGGTCGTAGTACACCGGTCCACGACCTTGGATTCC 178
|||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 119 TTGGAGCCGACGATTATCCATCTTCTGGTCGTAATACACCGGTCCACGACCTTGGATTCC 178
Query 179 CTGACTTCCCTTCTTTCCAAGAAGCAGTGGCACCACCACCGCCTCCGCCTGATCTTCCTC 238
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 179 CTGACTTCCCTTCTTTCCAAGAAGCAGTGGCGCCACCACCGCCTCCGCCTGATCTTCCTC 238
Query 239 TCCTACCGCCGCCTCTGCCTGATCTGGCTCTCCTTCCACCACCGGCATTTTCTGATCCTG 298
||||| ||||||||||||||||| || ||||||||||||| ||||||||| ||||| ||
Sbjct 239 TCCTAGCGCCGCCTCTGCCTGATGTGCCTCTCCTTCCACCGCCGGCATTTCCTGATTTTG 298
Query 299 AGAAGCCTAGGTTATCGGTTCCGGTTTGGCCTTCACTACCCGATTTCCCGCCCTTTCCAT 358
|||| ||||||||| |||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct 299 AGAAACCTAGGTTACCGGTTCCGGTTTGGCCTTCACTCCCCGAGTACCCGCCCTTTCCAT 358
Query 359 TCGTAGATCAGGCTGCTCCTTCCCAACACTTCGCTCCGAGATTCGATGAGTCCGATAATT 418
| ||||||||| ||||||||| |||| ||||||||||||||| |||||||||| |||||
Sbjct 359 TTGTAGATCAGTCTGCTCCTTACCAAGGCTTCGCTCCGAGATTTGATGAGTCCGCTAATT 418
Query 419 GGATGCCTTCTACCCCAAGTATCCCTCAAGTGTTT 453
||||||||||||||||||| |||||||||||||||
Sbjct 419 GGATGCCTTCTACCCCAAGCATCCCTCAAGTGTTT 453
Score = 577 bits (312), Expect = 1e-163
Identities = 487/566 (86%), Gaps = 33/566 (6%)
Strand=Plus/Plus
Query 538 AAGAAACTCCTTTGCCGAGT-GGA--ATCTGAGGTTTGTTTTGGAGATCATAATGAGAAA 594
|||||||||||||| ||||| | | |||||||||||| ||||||||| ||||||||||
Sbjct 613 AAGAAACTCCTTTGTCGAGTCGAATCATCTGAGGTTTGCTTTGGAGATGGTAATGAGAAA 672
Query 595 GACACAAACCC---T-AGCGAGA--TAGATTCGCTCCCTCTTGATCTAAAGATGGCTATA 648
||||||||||| | || ||| |||||||||||||| ||||||||||||||| ||||
Sbjct 673 GACACAAACCCAAGTGAGATAGATTTAGATTCGCTCCCTTTTGATCTAAAGATGGTTATA 732
Query 649 CTTACTAGATTGCCTGCCAAGTCTCTTACGAATCTCAAACACGTCTCTAAAATGTGGTCT 708
|||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 733 CTTACTAGATTGTCTGCCAAGTCTCTTACGAATTTCAAACGCGTCTCTAAAATGTGGTCT 792
Query 709 TCCATCATCCGAAGCCGAGGATTCATCGATTACTTCTTCTCTGTGTCCACG--G-----A 761
||||||||| |||||| | |||||||||||| ||||||| || ||||| || | |
Sbjct 793 TCCATCATCGGAAGCCAAAGATTCATCGATTCCTTCTTCACTATGTCCTCGAAGCAATCA 852
Query 762 GGAAGTCATAAAGTTACCCGTTAACACCCGATTCGTGGGATACGATCCGATTGATGATCA 821
|| ||| | ||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 853 CGATGTCCT-AAGTTTCCTGTTAACACTCGATTCGTGGGATACGATCCGATTGATGATCA 911
Query 822 ACACAAAGC---G--T-TAT-TAGTGCAGTCGATAAATCATAGTGATCATCTAGAGCACA 874
||| ||||| | | ||| | |||| |||| | | | || || ||||||||||||
Sbjct 912 ACAAAAAGCATTGTCTGTATCT-GTGCCGTCG--AGA--A-AGAGA-AATCTAGAGCACA 964
Query 875 AGGTCTTAACACTAGGGGGAGGTGGTCAAGGATGGAGACACATCGAAGGTACCACTGCGC 934
||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||
Sbjct 965 AGGTCTTAACACTAGGGGGAGGTGGTCAAGGATGGAGACACATTGAAGTTACCAATGCGC 1024
Query 935 CTTATAGCCCGATATCAGTGGGAGTATGCATCAATGGTTTTGTCTACTATGGTGCTTATA 994
||| ||||||| || | ||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1025 CTTTTAGCCCGGTAACTGTGGGAGTAAGCATCGATGGTTTTGTCTACTATGGTGCTTATA 1084
Query 995 GTCGAAACCGACCTATCAATCCAGTTATGGTGTGTTTTGAGGTTAGGTCTGAGAAGATAA 1054
| | || || |||||| ||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1085 GCCCAACCCCACCTATGAATCCAGTTTTGGTGTGTTTTGATGTTAGGTCTGAGAAGATAA 1144
Query 1055 GTTTTATCAAAGCTCCTGAA-GATGT 1079
||||||||||||||||| || |||||
Sbjct 1145 GTTTTATCAAAGCTCCT-AATGATGT 1169
Score = 379 bits (205), Expect = 3e-104
Identities = 235/249 (94%), Gaps = 3/249 (1%)
Strand=Plus/Plus
Query 1131 TTTTGATTTATGGATACTAGAAGACGTTGAGAAACATGAATGGTCAAAGCAAACATGTGT 1190
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1182 TTTTGATTTATGGATTCTAGAAGACGTTGAGAGACATGAATGGTCAAAGCAAACATGTGT 1241
Query 1191 GTTTCCCTCCTCTGT-G--TGGGATGATGTTGGGGATATCAAAATGTCTTTTCCAGGCAC 1247
||||||||||||||| | |||||| |||||||||||||| |||||||||||||||||||
Sbjct 1242 GTTTCCCTCCTCTGTCGCGTGGGATTATGTTGGGGATATCCAAATGTCTTTTCCAGGCAC 1301
Query 1248 CAACAAGGCTGGAATCGGAGACGATGAAGAATTTAGGCGCTCTTCTGGATTCGTAGACAA 1307
||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||| |
Sbjct 1302 CAACAAGGCTGGAATTGGAGACGATGAAGAATTTAGGCGCTGTTCCGGATTCGTAGACGA 1361
Query 1308 GGGTGAATGCCATGTCCGCATCGCACCTCAACATGTCGAGAGTATTGCCCATTTTAAGGA 1367
||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1362 GGGTGAATGTCATGTCCGCATCGCACCTCAACATGTAGAGAGTATTGCCCGTTTTAAGGA 1421
Query 1368 TCCTATCAT 1376
|||||||||
Sbjct 1422 TCCTATCAT 1430
> AT1G32660.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11811040-11812380 FORWARD LENGTH=1341
Length=1341
Score = 134 bits (72), Expect = 3e-30
Identities = 130/156 (83%), Gaps = 12/156 (8%)
Strand=Plus/Plus
Query 593 AAGACACAAACCCTAG--CG--AGA--TAGATTCGCTCCCTCTTGATCTAAAGATGGCTA 646
|||||||||||||||| | ||| |||||||||| |||||||| ||||||||||| |
Sbjct 152 AAGACACAAACCCTAGTAAGTTAGAGTTAGATTCGCTGCCTCTTGACCTAAAGATGGCGA 211
Query 647 TACTTACTAGATTGCCTGCCAAGTCTCTTACGAA-TCT-CAAACACGTCTCTAAA-ATGT 703
|||| |||||| | |||||||||||||||| ||| | | | | ||| || ||| ||||
Sbjct 212 TACTGACTAGAATCCCTGCCAAGTCTCTTATGAAGT-TGC-GATGCGTGTC-AAAGATGT 268
Query 704 GGTCTTCCATCATCCGAAGCCGAGGATTCATCGATT 739
||||||||||||||||||||||||| ||||| ||||
Sbjct 269 GGTCTTCCATCATCCGAAGCCGAGGTTTCATTGATT 304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67971537930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5