BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473309
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30790.1 | Symbols: | F-box and associated interaction doma... 1014 0.0
> AT1G30790.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:10932713-10934066 FORWARD LENGTH=1354
Length=1354
Score = 1014 bits (549), Expect = 0.0
Identities = 731/815 (90%), Gaps = 27/815 (3%)
Strand=Plus/Plus
Query 762 TGTAGAGCACTTGGTGTTAACTCTAAAAGGTGATaaaaaaaaGTACTCATGGAGGCAAAT 821
|||||||||||||||||| ||||||||||| || || ||||| |||||||||||||||||
Sbjct 546 TGTAGAGCACTTGGTGTTGACTCTAAAAGGCGACAAGAAAAATTACTCATGGAGGCAAAT 605
Query 822 CCAAGGTAACAACAACATTCCACCTTATTCACCTGTAACTATGAGAATATGCATCAACGG 881
|||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||
Sbjct 606 CCAAGGAAACAACAACATTCCACCTTATTCCCCTGTGACTATGAGAGTATGCATCAACGG 665
Query 882 GGTTGTGTATTATGGTGCTTGGACTCCAAGACTACGTATGAATGCAGTGATCGTTTGTTT 941
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 666 GGTTGTGTATTATGGTGCTTGGACTCCAAGACAAAGTATGAATGCAGTGATCGTTTGTTT 725
Query 942 TCATGTTAGATCCGAGAAGATAACTTTTATCAAAGCACCTAAGGATGTCGTACA-ATGGT 1000
| |||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||
Sbjct 726 TGATGTTAGATCCGAGAAGATAACTTTTATCAAAACACCTAAGGATGTCGTA-AGATGGT 784
Query 1001 GGGCTGAATCAATTCTGATGGAATACAAAGGGAAGTTAGCTTCCATTTTAAGACACCCTT 1060
| ||| |||||| |||||||||| ||||||||||||||||||||| ||||| ||| ||
Sbjct 785 GCAATGATTCAATTTTGATGGAATATAAAGGGAAGTTAGCTTCCATTGTAAGAAACCGTT 844
Query 1061 ATGCTCGTTTCGATAGTTTTGATTTGTGGGTGTTAGAAGATATCGAGAAGCATGAATGGT 1120
|| |||||||||||| ||||||||||||||||||||||||||||||||| || |||||||
Sbjct 845 ATTCTCGTTTCGATACTTTTGATTTGTGGGTGTTAGAAGATATCGAGAAACAAGAATGGT 904
Query 1121 CTAAGCAAACATGTGAGATTCCTTTCTCTGTGTGGGATTCTATTGAGGACGGTAACATGT 1180
| ||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||
Sbjct 905 CAAAGCAAACATGTGAGATTCCTCTCTCTGTGTGGGATTCTGTTGAGAACTTTAACATGT 964
Query 1181 CTTTTCCAGGTATTAACAAGTTTGGTGAGATAATTCTAGCACCGACATTCTTGTCACGCT 1240
||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| |||
Sbjct 965 CTTTTCCAGGTATTAACAAGTTTGGTGAGATCATTCTAGCACCAACATGCTTGTCAGGCT 1024
Query 1241 ATCATCTTCGACCCTTCTACATTTTCTACTACCATGTAGAAACAAAGAACATTAGAAGAG 1300
||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1025 ATCATCTTCGATCCTTCTACATTTTCTATTACCATGTAGAAACAAAGAAGATTAGAAGAG 1084
Query 1301 TTAGGCTTGAAGGAATTGCAGATGATGAAAATTTTAGGCGGTGTTATGGAATTGGAAAGA 1360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1085 TTAGGCTTGAAGGAATTGCAGATGATGAAAATTTTAGGCGGTGCTATGGAATTGGAA-G- 1142
Query 1361 ATGTTGGTCCATGTAACGTCTTTATCTCACCTGAACATGTTGAAACTTTAAGGTTTTTGT 1420
|| | || ||||||||||||||||||||| ||||||||||||||| |||||||| |||
Sbjct 1143 -TG--G-TCAATGTAACGTCTTTATCTCACCGGAACATGTTGAAACTATAAGGTTTCTGT 1198
Query 1421 AATGTGTATTTTTATTCAAGGATGTGTCCTATTTGCttttttttttttATATATACTCAA 1480
||||| | | ||||||||||||| |||| | ||||||| |||| ||| | ||||
Sbjct 1199 AATGT-T-TCTTTATTCAAGGATATGTCATGTTTGCTTCTTTTGTTT-A------CTCA- 1248
Query 1481 CATATATATGTTGATTTTTAGGTACCAAACAAATTGTTTTGATACTTTGGGATTTGCTAG 1540
||| ||| ||||||||| |||||||||||||||||| ||||||||| |||||| ||
Sbjct 1249 CATGTATGTGTTGATTTCTAGGTACCAAACAAATTGGTTTGATACTATGGGAT---CT-- 1303
Query 1541 ATGTTGAACATAATAAATGATGTGTTGTCTAAAAC 1575
|| |||| || |||||||||||||||||||||
Sbjct 1304 -TG---AACAAAAGAAATGATGTGTTGTCTAAAAC 1334
Score = 699 bits (378), Expect = 0.0
Identities = 494/549 (90%), Gaps = 12/549 (2%)
Strand=Plus/Plus
Query 1 ATGAAACG-CAAGGAGATAGATCATAT-CCCTCTTGATCTAACGGTGGAGATTCTCACAA 58
|||||||| | |||||||||||||||| |||| ||||||||||||||||||||||||| |
Sbjct 1 ATGAAACGTC-AGGAGATAGATCATATCCCCT-TTGATCTAACGGTGGAGATTCTCACCA 58
Query 59 GATTACCAGCCAAGTCTCTTTTGAGGTTCAAATGCGTTTCCAAGTTGTGGTCGTCCATTA 118
||||||||||||| |||||| ||| ||||||||||||||||||||| |||||||||||||
Sbjct 59 GATTACCAGCCAAATCTCTTATGAAGTTCAAATGCGTTTCCAAGTTATGGTCGTCCATTA 118
Query 119 TCCA-AAGCCAAGGCTTCATCGATTCCTTCTACTCCATTTCCTCTACACGACCACGGTCT 177
|||| || |||| ||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 119 TCCATAA-CCAAAGCTTCATCGATTCCTTCTACTCCATTTCCTCAACACGACCACGGTTT 177
Query 178 ATAGTCGCTTTCACCAACGGTTTA-TTCGCCAAG-GATGAGGACAAGCGTTTTTTCATCT 235
||||||||||||| |||||||| | ||| || || ||| |||| |||||||| |||||||
Sbjct 178 ATAGTCGCTTTCAGCAACGGTTCATTTC-CC-AGTGATAAGGAGAAGCGTTTGTTCATCT 235
Query 236 TCTCGTCTTCACAAGAGGGACATGAATCTTCTTCTTCTGTGATAAACAATCTCGATATC- 294
||||||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||| |
Sbjct 236 TCTCGTCCTCACACGAGGGACATGAATCTTCTTCTTCAGTGATAACCAATCTCGATA-CG 294
Query 295 ACAATACCTTCTTTAACCGTTTGTAATAACCCTGCGTCACGGTGTGTTTCCGTCAATGGT 354
|||||||||||| |||| |||| |||||||| ||||||||||||| ||||||||||||||
Sbjct 295 ACAATACCTTCTCTAACTGTTTCTAATAACCTTGCGTCACGGTGTATTTCCGTCAATGGT 354
Query 355 TTTGTGGCCTGTTCACTTAACACAGGGCTCATGATATGTAACCCTAGCACTAGACAAGTC 414
||| | |||||||||||| ||||| | ||| ||||||||||||||||||||||||||||
Sbjct 355 TTTATAGCCTGTTCACTTTACACAAGATTCACGATATGTAACCCTAGCACTAGACAAGTC 414
Query 415 ATTGTCTTACCAATCTTACCCCCACGTCACGCTCCAAAAATGAGAGGCAGATGTCTAGGG 474
||||||||||||||||||||| || ||| |||||| | |||||| ||| |||| |||||
Sbjct 415 ATTGTCTTACCAATCTTACCCTCAGGTCGTGCTCCAGATATGAGAAGCACATGTATAGGG 474
Query 475 TATGATCCGGTGGATGATCAATTCAAAGCTTTGGCTCTCATTTCTTCTCGCTTACCTAAT 534
|||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||
Sbjct 475 TATGATCCGGTGGATGATCAATTCAAAGCTTTGGCTCTTATTTCTTCTTGCATACCTAAT 534
Query 535 AATTATAGT 543
|| |||||
Sbjct 535 AAAGATAGT 543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77760644205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5