BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473310
Length=558
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30795.1 | Symbols: | Glycine-rich protein family | chr1:10... 771 0.0
> AT1G30795.1 | Symbols: | Glycine-rich protein family | chr1:10935753-10936348
FORWARD LENGTH=596
Length=596
Score = 771 bits (417), Expect = 0.0
Identities = 529/579 (91%), Gaps = 23/579 (4%)
Strand=Plus/Plus
Query 2 TTATGGCATATGGTCCTATAAATAAACACACTTA-C-CTCTTGATCATGCAACACATGAA 59
|||||||||||||| ||||||| ||||||||||| | | ||||||| | |||||||||||
Sbjct 17 TTATGGCATATGGTGCTATAAACAAACACACTTACCACGCTTGATCCTACAACACATGAA 76
Query 60 GTATGGCTACTTCAACCTACTCTAACTTCACCACTTTAGCACTAACCCTAATCTTGATCT 119
|||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 77 CCATGGCTTCTTCAACCCACTCTTACTTCACCACTTTAGCACTAACCCTAATCTTGATCT 136
Query 120 TTCGTCTGATACCGGAAACCACCGCATCACGCCATCTGAATGGAAAGAATCCGGCGGTAC 179
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 TTCGTCTCATACCAGAAACCACCGCATCACGCCATCTGAATGGAAAGAATCCGGCGGTAA 196
Query 180 TTGGAGTCACCACTACTAGCGAGAAATACATTGTTCCT-CGGCCG-T--CACCGTTTTTT 235
||||||| |||||||||||||||||||||||||||||| | |||| | ||||||||||
Sbjct 197 TTGGAGTTACCACTACTAGCGAGAAATACATTGTTCCTAC-GCCGTTACCACCGTTTTTA 255
Query 236 CGACCGTTTTTCCCACCGTTACCGTTTGCCCCTGCACCGTTCGGAGGGAATATCCCACGA 295
||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
Sbjct 256 CGACCCTTTTTCCCACCGTTACAGTTTGCCGCTGCACCGTTCGGAGGGAATATCCCACAA 315
Query 296 CCACCGTTACCTT---CACCTCCAACATTTCTACCGCGTCTCCGAGGTTTCAAGTTTCCT 352
||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 316 CCACCGTTACCTTCACCACCTCCAACATTTCTACCGTGTCTCCCAGGTTTCAAGTTTCCT 375
Query 353 CCCTTTCCGTTCCGAAAGCCAACGCCGCCGTAATCG--TATACGTTGACGGCATCAAGTC 410
||||||| || ||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 376 CCCTTTCAGTCCCGAAAGCCTACGCCGCCGTAATCGTATATACGTTGACGGCATCAAGTC 435
Query 411 TAAAACTGTAATG-AA-A-TAAATTATCTACTTTAATGTATTTTCTATCTCTATATATCA 467
||||||||||||| || | |||| |||||||||||||||||| |||||||||||||||||
Sbjct 436 TAAAACTGTAATGAAATATTAAACTATCTACTTTAATGTATTATCTATCTCTATATATCA 495
Query 468 CCGTTGATCATC--T--ATAATTGATGGTAATATCATGGTATGAAACTGTAATAAAGATC 523
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 CCGTTGATCATCTATAAATAATTGATGGTAATATCATGGTATGAAACTGTAATAAAGATC 555
Query 524 ACTGGTGTAGTAAT-A-TA--TTGAATACATACTATGTT 558
|||||||||||||| | || ||||||| ||||||||||
Sbjct 556 ACTGGTGTAGTAATTAATAAATTGAATAAATACTATGTT 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26774800351
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5