BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473311 Length=1011 Score E Sequences producing significant alignments: (Bits) Value AT1G30810.1 | Symbols: | Transcription factor jumonji (jmj) fa... 1077 0.0 AT1G30800.1 | Symbols: | Fasciclin-like arabinogalactan family... 1077 0.0 > AT1G30810.1 | Symbols: | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | chr1:10936765-10942292 REVERSE LENGTH=4156 Length=4156 Score = 1077 bits (583), Expect = 0.0 Identities = 724/791 (92%), Gaps = 14/791 (2%) Strand=Plus/Minus Query 1 AAGAATCCTAACGAACTCAAAAAGATTCTCTCTCTTTCTGTTACAACTTCGCCGCCGATT 60 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 3996 AAGAATCCTAACGAACTCAAAAAGATTCTCTCTCATTCTGTTACAACTTCGCCGCCGATT 3937 Query 61 TGATTCTCCGATGGCTACCTCAGGCCATCTCCTTCTCTTCTTCCTCATCACCACCGTCAC 120 ||| ||||||||||| |||||| |||||||| ||||| |||||||||||||||||||||| Sbjct 3936 TGAATCTCCGATGGCCACCTCAAGCCATCTCTTTCTCCTCTTCCTCATCACCACCGTCAC 3877 Query 121 ATTCCTAACTTCCGCCGCTTCTCCAGCGTATCTCACGTCGCAAGATCACCAACACGCCGA 180 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 3876 ATTCCTCACTTCCGCCGCTTCTCCAGCGTATCTCACGTCCCAAGATCACCAACACGCCGA 3817 Query 181 CAGAATCATCGAAGCAATGATCGGAGCCGGAGATTTCCGTGACTGGGCCGCTGATTTCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 3816 CAGAATCATCGAAGCAATGATCGGAGCCGGAGATTTCCGTGACTGGGCCGCAGATTTTCT 3757 Query 241 CTCCGCCGTCGATGACCAGTTAGGAATCCCTCTCTCCGCCACCATTTTCGTCCCAAGCGA 300 |||||||||||||||||| || || ||||||||||||||||| || ||| |||||||||| Sbjct 3756 CTCCGCCGTCGATGACCAATTCGGTATCCCTCTCTCCGCCACTATCTTCATCCCAAGCGA 3697 Query 301 TTTCGACTCCGCCGATGTCTCCTCCTCCTC--CA-CCACC---GGCGACAATAATGCTTA 354 |||||||||||| ||| ||||||||||||| | ||||| ||| |||| || ||| | Sbjct 3696 TTTCGACTCCGCTGATATCTCCTCCTCCTCTTCCTCCACCACTGGCAACAACAACGCTAA 3637 Query 355 TCCCCGTCGTCTCTCCGTCGCTTACCACATCGTACCTCAACGACTCTCGTTCACTGATCT 414 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 3636 TCCCCGTCGTCTCTCCGTCGCTTACCACATCGTACCTCAACGACTCTCCTTCACAGATCT 3577 Query 415 CCGTCTCTTGAAACCACTCTCTCGTCTTCCGACTCTTCTCCCGGGAAACTCAATCGTCGT 474 |||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 3576 TCGTCTCTTCAAACCACTCTCTCGTCTTCCGACTCTTCTCCCCGGAAACACAATCGTCGT 3517 Query 475 CACTAACAACTCTGTTTCCGGTTATACTCTCGACGGCGTTCTTGTCTCTGAACCGGATCT 534 |||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||| Sbjct 3516 CACTAACAACTCTGTTCCCGGTTACGCACTCGACGGCGTTCTTGTCTCTGAACCGGATCT 3457 Query 535 TTTCCTCTCTTCTTCGATCGCTATTCACGGTGTTGCTTCGTCGCTTGATTTCTCACGTTA 594 ||||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||| Sbjct 3456 TTTCCTCTCTTCTTCAATTGCTATTCACGGCGTTGCTTCGTCTCTTGATTTCTCACGTTA 3397 Query 595 CGGCGATTTTGGTACCGGTGATACTACTTTAGCTGATAGTCTCCGTCCATATCCTCATC- 653 |||||||||||||||||||||||||||||||||||||||||||||||| | ||| || Sbjct 3396 CGGCGATTTTGGTACCGGTGATACTACTTTAGCTGATAGTCTCCGTCCTTGGCCTTTTCA 3337 Query 654 GCCGTC--GTCGTCGTCCTCGTG--G-TGGATCCAACAGTGACAACAATCAAACCTCTGT 708 ||| || |||| |||| || | | ||||||||||||||||| |||||||||||||| Sbjct 3336 GCCTTCTAGTCGCCGTCGTCATCCCGATGGATCCAACAGTGACACCAATCAAACCTCTGC 3277 Query 709 TTCTGCATCCACTA-TACATTACTCAACTGGCTCGTTCTTGCTTCCATTGGCGGCTCTGA 767 |||||||||||| | |||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 3276 TTCTGCATCCAC-AGTACATTTCTCAACTGGCTCGTTCTTGCTTCCATTGGCGACTCTGG 3218 Query 768 CTTTGTTCTGA 778 || |||||||| Sbjct 3217 CTCTGTTCTGA 3207 Score = 309 bits (167), Expect = 3e-83 Identities = 223/247 (90%), Gaps = 15/247 (6%) Strand=Plus/Minus Query 779 TTTTTCAAGATTTTGTGAAATTCTG-CACATAATGTAAAGTTTTTCACATTAAGCAATAG 837 |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 3097 TTTTTCAAGATTTTGTGAAACTCTGTTACATAATGTAAAGTTTTTCACATTAAGCAATAG 3038 Query 838 CAAATTTTCTTGATTT--GAAAGAAGAATTACTATTATTACGACTTTTCTTTTCTTGTTT 895 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||| |||| Sbjct 3037 CAAATTTTCTTGATTTTTGAAAGAAGAATTTCTATTATTATGACTTTTCTTTTCTAGTTT 2978 Query 896 ACACTTCACTAACGCTAAGGTTAGGTTATTTGTTCTTGC-AGTGATAAA-AAGAACAAAA 953 ||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| Sbjct 2977 ACACTTCACTAACGCTAAGGTTAGGTTATTTGTTCTTGCTA-TGATAAATAAGAACAAAA 2919 Query 954 GATTATGAATAA-A--TGCTCC-aaaa-aaaaaGAA----TCAGAAAGAAATTTATTCTA 1004 |||||||||||| | ||| || |||| ||||| || |||||||||||||| |||| Sbjct 2918 GATTATGAATAATAAATGCCCCCAAAACAAAAAAAAAAAATCAGAAAGAAATTTCTTCTC 2859 Query 1005 TCTATCT 1011 ||||||| Sbjct 2858 TCTATCT 2852 > AT1G30800.1 | Symbols: | Fasciclin-like arabinogalactan family protein | chr1:10936923-10938099 FORWARD LENGTH=1177 Length=1177 Score = 1077 bits (583), Expect = 0.0 Identities = 724/791 (92%), Gaps = 14/791 (2%) Strand=Plus/Plus Query 1 AAGAATCCTAACGAACTCAAAAAGATTCTCTCTCTTTCTGTTACAACTTCGCCGCCGATT 60 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 3 AAGAATCCTAACGAACTCAAAAAGATTCTCTCTCATTCTGTTACAACTTCGCCGCCGATT 62 Query 61 TGATTCTCCGATGGCTACCTCAGGCCATCTCCTTCTCTTCTTCCTCATCACCACCGTCAC 120 ||| ||||||||||| |||||| |||||||| ||||| |||||||||||||||||||||| Sbjct 63 TGAATCTCCGATGGCCACCTCAAGCCATCTCTTTCTCCTCTTCCTCATCACCACCGTCAC 122 Query 121 ATTCCTAACTTCCGCCGCTTCTCCAGCGTATCTCACGTCGCAAGATCACCAACACGCCGA 180 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 123 ATTCCTCACTTCCGCCGCTTCTCCAGCGTATCTCACGTCCCAAGATCACCAACACGCCGA 182 Query 181 CAGAATCATCGAAGCAATGATCGGAGCCGGAGATTTCCGTGACTGGGCCGCTGATTTCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 183 CAGAATCATCGAAGCAATGATCGGAGCCGGAGATTTCCGTGACTGGGCCGCAGATTTTCT 242 Query 241 CTCCGCCGTCGATGACCAGTTAGGAATCCCTCTCTCCGCCACCATTTTCGTCCCAAGCGA 300 |||||||||||||||||| || || ||||||||||||||||| || ||| |||||||||| Sbjct 243 CTCCGCCGTCGATGACCAATTCGGTATCCCTCTCTCCGCCACTATCTTCATCCCAAGCGA 302 Query 301 TTTCGACTCCGCCGATGTCTCCTCCTCCTC--CA-CCACC---GGCGACAATAATGCTTA 354 |||||||||||| ||| ||||||||||||| | ||||| ||| |||| || ||| | Sbjct 303 TTTCGACTCCGCTGATATCTCCTCCTCCTCTTCCTCCACCACTGGCAACAACAACGCTAA 362 Query 355 TCCCCGTCGTCTCTCCGTCGCTTACCACATCGTACCTCAACGACTCTCGTTCACTGATCT 414 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 363 TCCCCGTCGTCTCTCCGTCGCTTACCACATCGTACCTCAACGACTCTCCTTCACAGATCT 422 Query 415 CCGTCTCTTGAAACCACTCTCTCGTCTTCCGACTCTTCTCCCGGGAAACTCAATCGTCGT 474 |||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 423 TCGTCTCTTCAAACCACTCTCTCGTCTTCCGACTCTTCTCCCCGGAAACACAATCGTCGT 482 Query 475 CACTAACAACTCTGTTTCCGGTTATACTCTCGACGGCGTTCTTGTCTCTGAACCGGATCT 534 |||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||| Sbjct 483 CACTAACAACTCTGTTCCCGGTTACGCACTCGACGGCGTTCTTGTCTCTGAACCGGATCT 542 Query 535 TTTCCTCTCTTCTTCGATCGCTATTCACGGTGTTGCTTCGTCGCTTGATTTCTCACGTTA 594 ||||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||| Sbjct 543 TTTCCTCTCTTCTTCAATTGCTATTCACGGCGTTGCTTCGTCTCTTGATTTCTCACGTTA 602 Query 595 CGGCGATTTTGGTACCGGTGATACTACTTTAGCTGATAGTCTCCGTCCATATCCTCATC- 653 |||||||||||||||||||||||||||||||||||||||||||||||| | ||| || Sbjct 603 CGGCGATTTTGGTACCGGTGATACTACTTTAGCTGATAGTCTCCGTCCTTGGCCTTTTCA 662 Query 654 GCCGTC--GTCGTCGTCCTCGTG--G-TGGATCCAACAGTGACAACAATCAAACCTCTGT 708 ||| || |||| |||| || | | ||||||||||||||||| |||||||||||||| Sbjct 663 GCCTTCTAGTCGCCGTCGTCATCCCGATGGATCCAACAGTGACACCAATCAAACCTCTGC 722 Query 709 TTCTGCATCCACTA-TACATTACTCAACTGGCTCGTTCTTGCTTCCATTGGCGGCTCTGA 767 |||||||||||| | |||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 723 TTCTGCATCCAC-AGTACATTTCTCAACTGGCTCGTTCTTGCTTCCATTGGCGACTCTGG 781 Query 768 CTTTGTTCTGA 778 || |||||||| Sbjct 782 CTCTGTTCTGA 792 Score = 309 bits (167), Expect = 3e-83 Identities = 223/247 (90%), Gaps = 15/247 (6%) Strand=Plus/Plus Query 779 TTTTTCAAGATTTTGTGAAATTCTG-CACATAATGTAAAGTTTTTCACATTAAGCAATAG 837 |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 902 TTTTTCAAGATTTTGTGAAACTCTGTTACATAATGTAAAGTTTTTCACATTAAGCAATAG 961 Query 838 CAAATTTTCTTGATTT--GAAAGAAGAATTACTATTATTACGACTTTTCTTTTCTTGTTT 895 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||| |||| Sbjct 962 CAAATTTTCTTGATTTTTGAAAGAAGAATTTCTATTATTATGACTTTTCTTTTCTAGTTT 1021 Query 896 ACACTTCACTAACGCTAAGGTTAGGTTATTTGTTCTTGC-AGTGATAAA-AAGAACAAAA 953 ||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| Sbjct 1022 ACACTTCACTAACGCTAAGGTTAGGTTATTTGTTCTTGCTA-TGATAAATAAGAACAAAA 1080 Query 954 GATTATGAATAA-A--TGCTCC-aaaa-aaaaaGAA----TCAGAAAGAAATTTATTCTA 1004 |||||||||||| | ||| || |||| ||||| || |||||||||||||| |||| Sbjct 1081 GATTATGAATAATAAATGCCCCCAAAACAAAAAAAAAAAATCAGAAAGAAATTTCTTCTC 1140 Query 1005 TCTATCT 1011 ||||||| Sbjct 1141 TCTATCT 1147 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49530868942 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5