BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473311
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30810.1 | Symbols: | Transcription factor jumonji (jmj) fa... 1077 0.0
AT1G30800.1 | Symbols: | Fasciclin-like arabinogalactan family... 1077 0.0
> AT1G30810.1 | Symbols: | Transcription factor jumonji (jmj)
family protein / zinc finger (C5HC2 type) family protein | chr1:10936765-10942292
REVERSE LENGTH=4156
Length=4156
Score = 1077 bits (583), Expect = 0.0
Identities = 724/791 (92%), Gaps = 14/791 (2%)
Strand=Plus/Minus
Query 1 AAGAATCCTAACGAACTCAAAAAGATTCTCTCTCTTTCTGTTACAACTTCGCCGCCGATT 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3996 AAGAATCCTAACGAACTCAAAAAGATTCTCTCTCATTCTGTTACAACTTCGCCGCCGATT 3937
Query 61 TGATTCTCCGATGGCTACCTCAGGCCATCTCCTTCTCTTCTTCCTCATCACCACCGTCAC 120
||| ||||||||||| |||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 3936 TGAATCTCCGATGGCCACCTCAAGCCATCTCTTTCTCCTCTTCCTCATCACCACCGTCAC 3877
Query 121 ATTCCTAACTTCCGCCGCTTCTCCAGCGTATCTCACGTCGCAAGATCACCAACACGCCGA 180
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3876 ATTCCTCACTTCCGCCGCTTCTCCAGCGTATCTCACGTCCCAAGATCACCAACACGCCGA 3817
Query 181 CAGAATCATCGAAGCAATGATCGGAGCCGGAGATTTCCGTGACTGGGCCGCTGATTTCCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 3816 CAGAATCATCGAAGCAATGATCGGAGCCGGAGATTTCCGTGACTGGGCCGCAGATTTTCT 3757
Query 241 CTCCGCCGTCGATGACCAGTTAGGAATCCCTCTCTCCGCCACCATTTTCGTCCCAAGCGA 300
|||||||||||||||||| || || ||||||||||||||||| || ||| ||||||||||
Sbjct 3756 CTCCGCCGTCGATGACCAATTCGGTATCCCTCTCTCCGCCACTATCTTCATCCCAAGCGA 3697
Query 301 TTTCGACTCCGCCGATGTCTCCTCCTCCTC--CA-CCACC---GGCGACAATAATGCTTA 354
|||||||||||| ||| ||||||||||||| | ||||| ||| |||| || ||| |
Sbjct 3696 TTTCGACTCCGCTGATATCTCCTCCTCCTCTTCCTCCACCACTGGCAACAACAACGCTAA 3637
Query 355 TCCCCGTCGTCTCTCCGTCGCTTACCACATCGTACCTCAACGACTCTCGTTCACTGATCT 414
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 3636 TCCCCGTCGTCTCTCCGTCGCTTACCACATCGTACCTCAACGACTCTCCTTCACAGATCT 3577
Query 415 CCGTCTCTTGAAACCACTCTCTCGTCTTCCGACTCTTCTCCCGGGAAACTCAATCGTCGT 474
|||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 3576 TCGTCTCTTCAAACCACTCTCTCGTCTTCCGACTCTTCTCCCCGGAAACACAATCGTCGT 3517
Query 475 CACTAACAACTCTGTTTCCGGTTATACTCTCGACGGCGTTCTTGTCTCTGAACCGGATCT 534
|||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||
Sbjct 3516 CACTAACAACTCTGTTCCCGGTTACGCACTCGACGGCGTTCTTGTCTCTGAACCGGATCT 3457
Query 535 TTTCCTCTCTTCTTCGATCGCTATTCACGGTGTTGCTTCGTCGCTTGATTTCTCACGTTA 594
||||||||||||||| || ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 3456 TTTCCTCTCTTCTTCAATTGCTATTCACGGCGTTGCTTCGTCTCTTGATTTCTCACGTTA 3397
Query 595 CGGCGATTTTGGTACCGGTGATACTACTTTAGCTGATAGTCTCCGTCCATATCCTCATC- 653
|||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 3396 CGGCGATTTTGGTACCGGTGATACTACTTTAGCTGATAGTCTCCGTCCTTGGCCTTTTCA 3337
Query 654 GCCGTC--GTCGTCGTCCTCGTG--G-TGGATCCAACAGTGACAACAATCAAACCTCTGT 708
||| || |||| |||| || | | ||||||||||||||||| ||||||||||||||
Sbjct 3336 GCCTTCTAGTCGCCGTCGTCATCCCGATGGATCCAACAGTGACACCAATCAAACCTCTGC 3277
Query 709 TTCTGCATCCACTA-TACATTACTCAACTGGCTCGTTCTTGCTTCCATTGGCGGCTCTGA 767
|||||||||||| | |||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 3276 TTCTGCATCCAC-AGTACATTTCTCAACTGGCTCGTTCTTGCTTCCATTGGCGACTCTGG 3218
Query 768 CTTTGTTCTGA 778
|| ||||||||
Sbjct 3217 CTCTGTTCTGA 3207
Score = 309 bits (167), Expect = 3e-83
Identities = 223/247 (90%), Gaps = 15/247 (6%)
Strand=Plus/Minus
Query 779 TTTTTCAAGATTTTGTGAAATTCTG-CACATAATGTAAAGTTTTTCACATTAAGCAATAG 837
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 3097 TTTTTCAAGATTTTGTGAAACTCTGTTACATAATGTAAAGTTTTTCACATTAAGCAATAG 3038
Query 838 CAAATTTTCTTGATTT--GAAAGAAGAATTACTATTATTACGACTTTTCTTTTCTTGTTT 895
|||||||||||||||| |||||||||||| ||||||||| |||||||||||||| ||||
Sbjct 3037 CAAATTTTCTTGATTTTTGAAAGAAGAATTTCTATTATTATGACTTTTCTTTTCTAGTTT 2978
Query 896 ACACTTCACTAACGCTAAGGTTAGGTTATTTGTTCTTGC-AGTGATAAA-AAGAACAAAA 953
||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||
Sbjct 2977 ACACTTCACTAACGCTAAGGTTAGGTTATTTGTTCTTGCTA-TGATAAATAAGAACAAAA 2919
Query 954 GATTATGAATAA-A--TGCTCC-aaaa-aaaaaGAA----TCAGAAAGAAATTTATTCTA 1004
|||||||||||| | ||| || |||| ||||| || |||||||||||||| ||||
Sbjct 2918 GATTATGAATAATAAATGCCCCCAAAACAAAAAAAAAAAATCAGAAAGAAATTTCTTCTC 2859
Query 1005 TCTATCT 1011
|||||||
Sbjct 2858 TCTATCT 2852
> AT1G30800.1 | Symbols: | Fasciclin-like arabinogalactan family
protein | chr1:10936923-10938099 FORWARD LENGTH=1177
Length=1177
Score = 1077 bits (583), Expect = 0.0
Identities = 724/791 (92%), Gaps = 14/791 (2%)
Strand=Plus/Plus
Query 1 AAGAATCCTAACGAACTCAAAAAGATTCTCTCTCTTTCTGTTACAACTTCGCCGCCGATT 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3 AAGAATCCTAACGAACTCAAAAAGATTCTCTCTCATTCTGTTACAACTTCGCCGCCGATT 62
Query 61 TGATTCTCCGATGGCTACCTCAGGCCATCTCCTTCTCTTCTTCCTCATCACCACCGTCAC 120
||| ||||||||||| |||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 63 TGAATCTCCGATGGCCACCTCAAGCCATCTCTTTCTCCTCTTCCTCATCACCACCGTCAC 122
Query 121 ATTCCTAACTTCCGCCGCTTCTCCAGCGTATCTCACGTCGCAAGATCACCAACACGCCGA 180
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 123 ATTCCTCACTTCCGCCGCTTCTCCAGCGTATCTCACGTCCCAAGATCACCAACACGCCGA 182
Query 181 CAGAATCATCGAAGCAATGATCGGAGCCGGAGATTTCCGTGACTGGGCCGCTGATTTCCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 183 CAGAATCATCGAAGCAATGATCGGAGCCGGAGATTTCCGTGACTGGGCCGCAGATTTTCT 242
Query 241 CTCCGCCGTCGATGACCAGTTAGGAATCCCTCTCTCCGCCACCATTTTCGTCCCAAGCGA 300
|||||||||||||||||| || || ||||||||||||||||| || ||| ||||||||||
Sbjct 243 CTCCGCCGTCGATGACCAATTCGGTATCCCTCTCTCCGCCACTATCTTCATCCCAAGCGA 302
Query 301 TTTCGACTCCGCCGATGTCTCCTCCTCCTC--CA-CCACC---GGCGACAATAATGCTTA 354
|||||||||||| ||| ||||||||||||| | ||||| ||| |||| || ||| |
Sbjct 303 TTTCGACTCCGCTGATATCTCCTCCTCCTCTTCCTCCACCACTGGCAACAACAACGCTAA 362
Query 355 TCCCCGTCGTCTCTCCGTCGCTTACCACATCGTACCTCAACGACTCTCGTTCACTGATCT 414
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 363 TCCCCGTCGTCTCTCCGTCGCTTACCACATCGTACCTCAACGACTCTCCTTCACAGATCT 422
Query 415 CCGTCTCTTGAAACCACTCTCTCGTCTTCCGACTCTTCTCCCGGGAAACTCAATCGTCGT 474
|||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 423 TCGTCTCTTCAAACCACTCTCTCGTCTTCCGACTCTTCTCCCCGGAAACACAATCGTCGT 482
Query 475 CACTAACAACTCTGTTTCCGGTTATACTCTCGACGGCGTTCTTGTCTCTGAACCGGATCT 534
|||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||
Sbjct 483 CACTAACAACTCTGTTCCCGGTTACGCACTCGACGGCGTTCTTGTCTCTGAACCGGATCT 542
Query 535 TTTCCTCTCTTCTTCGATCGCTATTCACGGTGTTGCTTCGTCGCTTGATTTCTCACGTTA 594
||||||||||||||| || ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 543 TTTCCTCTCTTCTTCAATTGCTATTCACGGCGTTGCTTCGTCTCTTGATTTCTCACGTTA 602
Query 595 CGGCGATTTTGGTACCGGTGATACTACTTTAGCTGATAGTCTCCGTCCATATCCTCATC- 653
|||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 603 CGGCGATTTTGGTACCGGTGATACTACTTTAGCTGATAGTCTCCGTCCTTGGCCTTTTCA 662
Query 654 GCCGTC--GTCGTCGTCCTCGTG--G-TGGATCCAACAGTGACAACAATCAAACCTCTGT 708
||| || |||| |||| || | | ||||||||||||||||| ||||||||||||||
Sbjct 663 GCCTTCTAGTCGCCGTCGTCATCCCGATGGATCCAACAGTGACACCAATCAAACCTCTGC 722
Query 709 TTCTGCATCCACTA-TACATTACTCAACTGGCTCGTTCTTGCTTCCATTGGCGGCTCTGA 767
|||||||||||| | |||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 723 TTCTGCATCCAC-AGTACATTTCTCAACTGGCTCGTTCTTGCTTCCATTGGCGACTCTGG 781
Query 768 CTTTGTTCTGA 778
|| ||||||||
Sbjct 782 CTCTGTTCTGA 792
Score = 309 bits (167), Expect = 3e-83
Identities = 223/247 (90%), Gaps = 15/247 (6%)
Strand=Plus/Plus
Query 779 TTTTTCAAGATTTTGTGAAATTCTG-CACATAATGTAAAGTTTTTCACATTAAGCAATAG 837
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 902 TTTTTCAAGATTTTGTGAAACTCTGTTACATAATGTAAAGTTTTTCACATTAAGCAATAG 961
Query 838 CAAATTTTCTTGATTT--GAAAGAAGAATTACTATTATTACGACTTTTCTTTTCTTGTTT 895
|||||||||||||||| |||||||||||| ||||||||| |||||||||||||| ||||
Sbjct 962 CAAATTTTCTTGATTTTTGAAAGAAGAATTTCTATTATTATGACTTTTCTTTTCTAGTTT 1021
Query 896 ACACTTCACTAACGCTAAGGTTAGGTTATTTGTTCTTGC-AGTGATAAA-AAGAACAAAA 953
||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||
Sbjct 1022 ACACTTCACTAACGCTAAGGTTAGGTTATTTGTTCTTGCTA-TGATAAATAAGAACAAAA 1080
Query 954 GATTATGAATAA-A--TGCTCC-aaaa-aaaaaGAA----TCAGAAAGAAATTTATTCTA 1004
|||||||||||| | ||| || |||| ||||| || |||||||||||||| ||||
Sbjct 1081 GATTATGAATAATAAATGCCCCCAAAACAAAAAAAAAAAATCAGAAAGAAATTTCTTCTC 1140
Query 1005 TCTATCT 1011
|||||||
Sbjct 1141 TCTATCT 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5