BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473318
Length=279
Score E
Sequences producing significant alignments: (Bits) Value
ATCG01300.1 | Symbols: RPL23.2 | ribosomal protein L23 | chrC:1... 503 4e-142
ATCG00840.1 | Symbols: RPL23.1, RPL23 | ribosomal protein L23.1... 503 4e-142
> ATCG01300.1 | Symbols: RPL23.2 | ribosomal protein L23 | chrC:152506-152787
FORWARD LENGTH=282
Length=282
Score = 503 bits (272), Expect = 4e-142
Identities = 277/279 (99%), Gaps = 1/279 (0%)
Strand=Plus/Plus
Query 1 ATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGGAAAAATCAA 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 5 ATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATT-GGGGAAAAATCAA 63
Query 61 TATACTTTTAATGTTGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTC 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 TATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTC 123
Query 121 TTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAAAGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 TTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAAAGA 183
Query 181 ATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 ATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCG 243
Query 241 GGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA 279
|||||||||||||||||||||||||||||||||||||||
Sbjct 244 GGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA 282
> ATCG00840.1 | Symbols: RPL23.1, RPL23 | ribosomal protein L23.1
| chrC:85862-86143 REVERSE LENGTH=282
Length=282
Score = 503 bits (272), Expect = 4e-142
Identities = 277/279 (99%), Gaps = 1/279 (0%)
Strand=Plus/Plus
Query 1 ATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGGAAAAATCAA 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 5 ATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATT-GGGGAAAAATCAA 63
Query 61 TATACTTTTAATGTTGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTC 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 TATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTC 123
Query 121 TTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAAAGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 TTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAAAGA 183
Query 181 ATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 ATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCG 243
Query 241 GGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA 279
|||||||||||||||||||||||||||||||||||||||
Sbjct 244 GGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA 282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12818275995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5