BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473321

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00810.1 | Symbols: RPL22 | ribosomal protein L22 | chrC:834...   793    0.0  


> ATCG00810.1 | Symbols: RPL22 | ribosomal protein L22 | chrC:83467-83949 
REVERSE LENGTH=483
Length=483

 Score =  793 bits (429),  Expect = 0.0
 Identities = 459/474 (97%), Gaps = 0/474 (0%)
 Strand=Plus/Plus

Query  1    ATGATAAAGAAGAGAAAGAAGAAATCATATACTTCCGTATATGCTTTAGGGCAATATATA  60
            ||||||||||||||||| ||||||||||||||    ||||||||||||||||||||||||
Sbjct  1    ATGATAAAGAAGAGAAAAAAGAAATCATATACGGAAGTATATGCTTTAGGGCAATATATA  60

Query  61   TCTATTTCTGCCCATAAAGCACGGAGAGTTATTGATCAAATACATGGACGTTCCTACGAA  120
            ||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||| |||
Sbjct  61   TCTATGTCTGCCCATAAAGCACGGAGAGTAATTGATCAAATACGTGGACGTTCCTATGAA  120

Query  121  GAAGCACTTATGATATTAGAACTTATGCCTTATCGAGGATGTTATCCCATTTTTAAATTG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GAAGCACTTATGATATTAGAACTTATGCCTTATCGAGGATGTTATCCCATTTTTAAATTG  180

Query  181  GTTTATTCTGCCGCAGCGAACGCTAGTCACAATAAGGGTTTCAAAGAAACCAATTTAGTC  240
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GTTTATTCTGCTGCAGCGAACGCTAGTCACAATAAGGGTTTCAAAGAAACCAATTTAGTC  240

Query  241  ATTAGTAAAGCTGAGGTGAACCAAAGAAATACTGTGAAAAAATTAAAACCTCGTGCCCGA  300
            |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct  241  ATTAGTAAAGCTGAGGTGAACCAAGGGAATACTGTGAAAAAATTAAAACCTCGTGCCCGA  300

Query  301  GGACGAAGTTACCCAATAAAACGATCCACTTGTCATATAACTATCGTATTGGAAGATATA  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  GGACGAAGTTACCCAATAAAACGATCCACTTGTCATATAACTATCGTATTGGAAGATATA  360

Query  361  TCCTTCTATCAACAATATGAAGAATATTTAATGTATTTAGAAAAACCTGGATGCAGCAAT  420
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  361  TCCTTCTATCAACAATATGAAGAATATTTAATGTATTTAAAAAAACCTGGATGCAGCAAT  420

Query  421  GAAAACAGAAATCTAACATGTTATGATAGATATAGTAGTGGAGACCTATGGGAC  474
            |||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct  421  GAAAACAGAAATCTAACATGTTATGATACATATAGTAGTGGAGGCCTATGGGAC  474



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22555132003


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5