BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473322

Length=649
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00800.1 | Symbols:  | structural constituent of ribosome | ...  1160    0.0  


> ATCG00800.1 | Symbols:  | structural constituent of ribosome 
| chrC:82826-83482 REVERSE LENGTH=657
Length=657

 Score = 1160 bits (628),  Expect = 0.0
 Identities = 642/649 (99%), Gaps = 0/649 (0%)
 Strand=Plus/Plus

Query  1    ATGGGACAAAAAATAAATCCACTTGGTTTCAGACTTGGTACAACCCAAAGTCATCATTCT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGGACAAAAAATAAATCCACTTGGTTTCAGACTTGGTACAACCCAAAGTCATCATTCT  60

Query  61   CTTTGGTTTGCACAACCAAAAAAGTATTCAGAAGGTTTAGAAGAAGATaaaaaaaTACGA  120
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  61   CTTTGGTTTGCACAACCAAAAAAGTATTCTGAAGGTTTAGAAGAAGATAAAAAAATACGA  120

Query  121  GACTGTATTAAAAATTATGTCCaaaaaaaTATAAGAATATCCTCTGGTATGGAGGGAATT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GACTGTATTAAAAATTATGTCCAAAAAAATATAAGAATATCCTCTGGTATGGAGGGAATT  180

Query  181  GCACGTATCGAAATTCAAAAAAGAATCAATCTCATCCAGATCATAATCTATATGGGATTT  240
            |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  181  GCACGTATTGAAATTCAAAAAAGAATCGATCTCATCCAGATCATAATCTATATGGGATTT  240

Query  241  CCTAAATTATTAATTGAAGATAAACCCCGAAGAGTCGAAGAATTACAGATAAATGTTCAA  300
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  241  CCTAAATTATTAATTGAAGATAAACCCCGAAGAGTCGAAGAATTACAGATGAATGTTCAA  300

Query  301  AAAGAACTTAATTGTGTCAATAGAAAACTCAACATTGCTATTACCAGAATTTCCAATCCG  360
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  AAAGAACTAAATTGTGTCAATAGAAAACTCAACATTGCTATTACCAGAATTTCCAATCCG  360

Query  361  TATGGGGATCCTAATATTCTTGCAGAATTTATAGCTGGACAATTAAAAAATCGCGTTTCT  420
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  361  TATGGGGATCCTAATATTCTTGCAGAATTTATCGCTGGACAATTAAAAAATCGCGTTTCT  420

Query  421  TTTCGAAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAGGCGAATACAAAAGGAATT  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  TTTCGAAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAGGCGAATACAAAAGGAATT  480

Query  481  CAAGTACAAATTGCAGGACGTATCGACGGAAAAGAAATTGCACGTGTTGAATGGATCAGA  540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  CAAGTACAAATTGCAGGACGTATCGACGGAAAAGAAATTGCACGTGTTGAATGGATCAGA  540

Query  541  GAAGGCAGAGTTCCTTTACAAACAATTGAAGCTAAAATTGATTATTGTTCCTATACAGTT  600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  GAAGGCAGAGTTCCTTTACAAACAATTGAAGCTAAAATTGATTATTGTTCCTATACAGTT  600

Query  601  CGAACTATTTATGGGGTCTTAGGAATAAAAATTTGGATATTCGTAGACG  649
            ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  601  CGAACTATTTATGGGGTTTTAGGAATAAAAATTTGGATATTCGTAGACG  649



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31346107728


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5