BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473323
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30825.1 | Symbols: ARPC2A, DIS2 | Arp2/3 complex, 34 kD sub... 1775 0.0
> AT1G30825.1 | Symbols: ARPC2A, DIS2 | Arp2/3 complex, 34 kD subunit
p34-Arc | chr1:10960941-10963182 FORWARD LENGTH=1305
Length=1305
Score = 1775 bits (961), Expect = 0.0
Identities = 1115/1185 (94%), Gaps = 28/1185 (2%)
Strand=Plus/Plus
Query 1 GTTATCGAAGAAACGTTCAAGCTGTGACAGAGAATCTCGGTCGTCTTCGTTTGTCTCCGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTTATCGAAGAAACGTTCAAGCTGTGACAGAGAATCTCGGTCGTCTTCGTTTGTCTCCGA 60
Query 61 CGAGCTCTCTTTCTTCTCCGATTAGATCCCGTGAGAAGAACTCAAAGACTCTAGGGTTTA 120
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 CGAGCTCTCTTTCTTCTCCGATTAGATCCCGTGAGAAGAACTCAAAGGCTCTAGGGTTTC 120
Query 121 TC-GT-A---AGA-AAGT-----A-AT--CG-ATGA---TA--C--T-AT--T---GCAG 152
|| || | || || | | || || | || || | | || | ||||
Sbjct 121 TCTGTGATTCAGTTAACTCCTTTAGATATCGTAAGAAAGTAATCGATGATACTATTGCAG 180
Query 153 TCACATTCAAGGTTTCTTCTTCAAACGCTATTGACGCGAGCTCAAAATCTTGATAAAGCA 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCACATTCAAGGTTTCTTCTTCAAACGCTATTGACGCGAGCTCAAAATCTTGATAAAGCA 240
Query 213 GTGGAGCTAGATTATCAATGGATTGAATTTGATGATGTTCGTTACCATGTTCAGGTGACA 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTGGAGCTAGATTATCAATGGATTGAATTTGATGATGTTCGTTACCATGTTCAGGTGACA 300
Query 273 ATGAAGAATCCAAATCTGTTGTTGCTTTCGGTTTCGTTACCGAATCCACCACCTGAAGCA 332
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 ATGAAGAATCCAAATCTGTTGTTGCTTTCGGTTTCGTTACCAAATCCACCACCTGAAGCA 360
Query 333 ATGTCCTTTGATGGACTTCCTTTGGGAGCTATAGAAGCTATTAAAACTACTTACGGGACG 392
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 361 ATGTCCTTTGATGGACTTCCTTTAGGAGCTATAGAAGCTATTAAAACCACTTACGGGACA 420
Query 393 GGTTTTCAAATACTTGATCCTCCAAGAGATGGGTTTAGTTTAACCCTGAAGCTCAATTTC 452
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 421 GGTTTTCAAATACTTGATCCTCCTAGAGATGGTTTTAGTTTAACCCTCAAGCTCAATTTC 480
Query 453 TCTAAAGTTCGTCCGGACGAAGAGTTATTAACGAAGCTAGCTTCCATTAGAGAAGTTGTG 512
|||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 TCTAAAGTTCGTCCTGATGAAGAGTTATTAACGAAGCTAGCTTCCATTAGAGAAGTGGTG 540
Query 513 ATGGGTGCGCCGCTAAAAATCATTTTCAAGCATTTAGCTTCAAGAACGGTTGCTCCTGAG 572
|||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 ATGGGTGCACCGTTAAAAATCATTTTCAAGCATTTAGCTTCAAGGACGGTTGCTCCTGAG 600
Query 573 CTGGATAGGCTTGTAGCAGTTATGCATAGACCTAACGAGACATTTTTCCTCGTGCCTCAG 632
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 601 CTGGATAGGCTTGTAGCAATTATGCATAGACCTAACGAGACGTTTTTCCTCGTGCCTCAG 660
Query 633 GCGGATAAAGTCACCGTGGCATTTCCTATGAGATTTAAAGACTCCGTAGACACAATTCTA 692
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 661 GCGGATAAAGTCACTGTGGCATTTCCTATGAGATTTAAAGACTCCGTAGACACGATTCTG 720
Query 693 GCAACTTCTTTCTTTAAGGAATTTGTAGAGGCGAGGCGTGCTGCTGCACTTAATACTGCT 752
|| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 721 GCGACTTCTTTCCTTAAGGAATTTGTAGAGGCGAGGCGTGCTGCTGCGCTTAATACTGCT 780
Query 753 CCTTCTTGTTCGTGGTCTCCAACCGCACCGCATGAATTAGAAGGAGCTCCTAAAGAAACA 812
||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 781 CCTTCTTGTTCTTGGTCTCCAACCGCACCGCAGGAATTAGAGGGAGCTCCTAAAGAAACA 840
Query 813 CTCTCTGCTAATGCCGGTTTTGTAACTTTTGTCATTTTTCCTCGGCATGTGGAAGGGAAA 872
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTATCCGCTAATGCCGGTTTTGTAACTTTTGTCATTTTTCCTCGGCATGTGGAAGGGAAA 900
Query 873 AAGCTTGATCGTACTGTCTGGAATTTATCGACCTTTCATGCTTATGTTAGTTACCATGTC 932
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 901 AAGCTCGATCGTACTGTCTGGAATTTATCGACCTTTCATGCTTATGTTAGTTATCACGTC 960
Query 933 AAGTTCTCAGAGGGATTTATGCACACCAGGATGCGGCGTCGCGTGGAATCTATGATTCAG 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AAGTTCTCAGAGGGATTTATGCACACCAGGATGCGGCGTCGCGTGGAATCTATGATTCAG 1020
Query 993 GCTCTGGATCAAGCTAAGCCATTGGAGAAAACAAGATCAATGAACAACAAGTCATTTAAA 1052
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1021 GCTCTGGATCAAGCTAAGCCATTGGAGAAAACAAGATCGATGAACAACAAGTCATTTAAA 1080
Query 1053 CGGCTAGGACTCAACGATGCCAATCACACCAACTCCAAGTAGTTTGATTTCTCACAAAGC 1112
||||||||||||||||| | ||||||||||||||| |||||||| |||||||||| ||||
Sbjct 1081 CGGCTAGGACTCAACGAGGTCAATCACACCAACTCGAAGTAGTTGGATTTCTCACGAAGC 1140
Query 1113 AATTTTGTAAAAACTTGTGAGTAGCTGAGACATGttttttttttA 1157
|||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1141 AATTTTGTAAAAACTTGTGATTAGCTGAGACATGTATTTTTTTTA 1185
Score = 154 bits (83), Expect = 2e-36
Identities = 93/98 (95%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 1149 ttttttttAGTACAATTCTTTCAGATATTTCTATACATCTGATCCTGCGAAATATTTGAA 1208
||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1207 TTTATTTTAGTACAATTCTTTCAGATATTTCTATACATCTGATCTTGCTAAATATTTGAA 1266
Query 1209 CAAATGTATAGTGTGAAAATTGTAAGAAATTCACCTTG 1246
|||||||||| |||||||||||||||||| ||||||||
Sbjct 1267 CAAATGTATAATGTGAAAATTGTAAGAAACTCACCTTG 1304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61244664900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5