BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473325 Length=1563 Score E Sequences producing significant alignments: (Bits) Value AT1G30840.1 | Symbols: ATPUP4, PUP4 | purine permease 4 | chr1:... 2418 0.0 > AT1G30840.1 | Symbols: ATPUP4, PUP4 | purine permease 4 | chr1:10974447-10976036 FORWARD LENGTH=1590 Length=1590 Score = 2418 bits (1309), Expect = 0.0 Identities = 1490/1576 (95%), Gaps = 18/1576 (1%) Strand=Plus/Plus Query 1 TTGTGTTGTTGGAGACTGAACCATCAACGCTTTTTCAACACTTCTCCTTCTTCCTCCTTT 60 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 4 TTGTGTTGTTGGAGACTGAACCATCAACGCTTTTTCGACACTTCTTCTTCTTCCTCCTTT 63 Query 61 CTCTCTTCATGcaaaatcacagttacaagaaataaacaaaagattat--a--aaaacaca 116 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| | Sbjct 64 CTCTCTTCATGCAAAATCACAGTTACAAGAAATAAACAAAAGATTATAAATCAAAACATA 123 Query 117 aagaggcaaaaaTGAGTGATGGTCGAGTTAACGCAGATCAACAACAACAAGAGAACATGG 176 ||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 124 AAGAGACAAAAATGAGTGATGGTCGAGTTAACGCAGATCCTCAACAAGAAGAGAACATGG 183 Query 177 TTAAACCACCGGTTAAGAGATCTCTCACTCTCGTCATCGTCACTTACGTTTGTCTCTTCG 236 |||||||||||||||||||||||||||||||| ||||||| |||||| ||| ||||||| Sbjct 184 TTAAACCACCGGTTAAGAGATCTCTCACTCTCCTCATCGTGACTTACTTTTTTCTCTTCT 243 Query 237 TCGGCTCCATCGCTTCGAGCCTTCTCGCGAAGTACTACTTCGTCCACGGTGGCTCGAGCC 296 ||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 244 TCGGCTCTATCGCTTCGAGCCTTCTCGCGAAGTACTATTTCGTCTACGGTGGCTCGAGCC 303 Query 297 GGTGGGTCTCGACGTGGGTTCAATCCGCTGGCTTCCCTCTCCTCCTCACCCTAATCTACT 356 |||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 304 GGTGGGTCTCCACGTGGGTTCAATCTGCTGGCTTCCCTCTCCTCCTCATCCTAATCTACT 363 Query 357 TCCCTCGCTATGTTTTCAAAACCACCACCCGCCGTCCTTTCACGCGCTTCACGCGCCGCC 416 |||||| ||| ||| ||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 364 TCCCTCACTACGTTCTCAAAACCACCACTCGCCGTCCTTTCACGCGCTTCACGCTCCGCC 423 Query 417 ATCTCATCTTCTCCGTGTTGATCGGGTTTGTTCTCGGTTTCAACAACTTCCTCTTCTCAT 476 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 424 ATCTCATCTTCTCCGTGTTGATCGGGCTTGTTCTCGGTTTCAACAACTTCCTCTTCTCAT 483 Query 477 GGGGAACCTCGTACCTTCCGGTGTCCACGTCATCGCTTCTCCTCTCGACACAACTTGTCT 536 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 484 GGGGAACCTCGTACCTTCCGGTGTCCACGTCATCGCTTCTCCTCTCGACACAACTCGTCT 543 Query 537 TCACTCTCATTTTGTCT-GCGATCATTGTGAAACAGAAAATCAATTTCTCAAACCTCAAC 595 ||||||||||||||||| | |||||| ||||||||||| |||| |||||||||||||||| Sbjct 544 TCACTCTCATTTTGTCTAG-GATCATAGTGAAACAGAAGATCACTTTCTCAAACCTCAAC 602 Query 596 TGTGTTGTTCTCTTGACGTTAAGCTCTGTTTTGTTGGCTCTCGGTTCGAGTAGAGATAAA 655 || ||||| || ||||||||||||||||||||||||||||| | |||||||| ||||||| Sbjct 603 TGCGTTGTCCTGTTGACGTTAAGCTCTGTTTTGTTGGCTCTTGATTCGAGTAAAGATAAA 662 Query 656 CCGGCCGGTTTAACTAAAACCAAGTATTACATCGGGTTTGTATCCACGATCGGAGCCGGT 715 ||| |||||||||| ||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 663 CCGTCCGGTTTAACCAAAACCAAGTATTTCATCGGGTATGTATCCACGATCGGAGCCGGT 722 Query 716 TTACTCTTCGCTCTTTACCTCCCCGTGACGGAGAAGCTATACCGTAGCGTTTATTGTTAC 775 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 723 TTACTCTTCGCTCTTTACCTCCCCGTGACGGAGAAGCTATACCGTACCGTTTATTGTTAC 782 Query 776 GCGATGGTCATGGAGGTGCAACTGGTGATGGAATTCGCTGCCACGGTTTTCGCGACAATC 835 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 783 GCGATGGTCATGGAGGTGCAACTGGTGATGGAATTCGCAGCGACGGTTTTCGCGACAATC 842 Query 836 GGTATGGTTTTCGACGGCGGGTTT-AGAGAAATGGTTAAGGAAGCTAACCATGTTTTCAC 894 ||||||| || ||| ||||||||| || ||||||||||||||||| |||||||||||||| Sbjct 843 GGTATGGCTTGCGAAGGCGGGTTTAAG-GAAATGGTTAAGGAAGCGAACCATGTTTTCAC 901 Query 895 CAAAGGACCAACAGTTTATTGGACGGTTGCGATTTTTGCGAATGTGGTGACGTGGCAGCT 954 ||||||||||||| ||||||||||| ||||||| | || |||||||||||||||||||| Sbjct 902 CAAAGGACCAACATTTTATTGGACGTTTGCGATACTAGCAAATGTGGTGACGTGGCAGCT 961 Query 955 CTGTTTCGCAGCCACGTCAGGGATAGTTTACTTGACCTCAGGTATCACCGGAGGTATCTG 1014 || ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 962 CTCTTTCGCAGCCACGTCAGGGATGGTTTACTTGACGTCAGGTATCACCGGAGGTATCTG 1021 Query 1015 CATGACGGCGTTGCTTGCGATGAATGTGATAGGAGGTGTGGTGGTTTACGGTGATGAGTT 1074 ||||||||||||||| |||||||||||||||||||||||||||| ||||||||| | ||| Sbjct 1022 CATGACGGCGTTGCTCGCGATGAATGTGATAGGAGGTGTGGTGGCTTACGGTGACGTGTT 1081 Query 1075 TGGTGGAGTGAAGATTGTGTCGACGGTGCTATGTATTTGGGGATTCTCATCGTACATC-T 1133 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | Sbjct 1082 TGGTGGAGTGAAGATTGTGTCGACGGTGCTATGTATTTGGGGATTCTCATCTTACA-CAT 1140 Query 1134 ACGGGATGTATATGAAGATGAAGAAGGAGGAGAAGGAGAAGGGAGAATATTCTGGCGTAA 1193 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1141 ACGGGATGTATATGAAGATGAAGAAGGAGGAGAAGGAGAAGGGAGAATATTCCGGCGTAA 1200 Query 1194 AGACGACGGAAGACGGCGGAGAGATGGAGGTGGAAATGGGAAAAGTTAAAGATGACGTGG 1253 |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1201 AGACGACGGAAGACAGCGGAGAGATGGAGGTGGAAATGGGAAATGTTAAAGATGACGTGG 1260 Query 1254 CGGCGGCGGATGATAGGGTTTGAAGATATCTGTGTGATTGAGACGGCCGTTATGATTATT 1313 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1261 CGGCGGCGGATGATAGGGCTTGAAGATATCTGTGTGATTGAGACGGCCGTTATGATTATT 1320 Query 1314 ATTAGGAAGGAAG-C--C---aaaaaaaaaaGTAGTAGTAtcttttttgtgttctttctt 1367 ||||||||||||| | | ||||||||||||||||||||| ||||||||||||||||| Sbjct 1321 ATTAGGAAGGAAGCCAACAAAAAAAAAAAAAGTAGTAGTATC-TTTTTGTGTTCTTTCTT 1379 Query 1368 tttctcaccttatttttttttagtaatgcatttgcttttgttttggttgttgtttttagg 1427 ||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 1380 TTTCTCACCTTATGTTTTTTTAGTAATGCATTTGCTTTTGTTTTTCTTGTT-TTTTTAGG 1438 Query 1428 ttgttttgtttttccttttctggttatttttATGAATTATCCTCTTATCATGGCCACAAC 1487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1439 TTGTTTTGTTTTTCCTTTTCTGGTTATTTTTATGAATTATCCTCTTATCATGGCCACAAC 1498 Query 1488 TAATGATGTTGTACACTTTTTAAGTGTGGATTTTCCAATGTGGGTCGATAAGTATGTATT 1547 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 1499 TAATGATGTTGTACACTTTTTAAGTGTGGATTTTCCAATGTCGGTTGATAAGTATGTATT 1558 Query 1548 TTTCTGTTATCTATGG 1563 |||||||||||||||| Sbjct 1559 TTTCTGTTATCTATGG 1574 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77158237665 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5