BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473325
Length=1563
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30840.1 | Symbols: ATPUP4, PUP4 | purine permease 4 | chr1:... 2418 0.0
> AT1G30840.1 | Symbols: ATPUP4, PUP4 | purine permease 4 | chr1:10974447-10976036
FORWARD LENGTH=1590
Length=1590
Score = 2418 bits (1309), Expect = 0.0
Identities = 1490/1576 (95%), Gaps = 18/1576 (1%)
Strand=Plus/Plus
Query 1 TTGTGTTGTTGGAGACTGAACCATCAACGCTTTTTCAACACTTCTCCTTCTTCCTCCTTT 60
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 4 TTGTGTTGTTGGAGACTGAACCATCAACGCTTTTTCGACACTTCTTCTTCTTCCTCCTTT 63
Query 61 CTCTCTTCATGcaaaatcacagttacaagaaataaacaaaagattat--a--aaaacaca 116
||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
Sbjct 64 CTCTCTTCATGCAAAATCACAGTTACAAGAAATAAACAAAAGATTATAAATCAAAACATA 123
Query 117 aagaggcaaaaaTGAGTGATGGTCGAGTTAACGCAGATCAACAACAACAAGAGAACATGG 176
||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 124 AAGAGACAAAAATGAGTGATGGTCGAGTTAACGCAGATCCTCAACAAGAAGAGAACATGG 183
Query 177 TTAAACCACCGGTTAAGAGATCTCTCACTCTCGTCATCGTCACTTACGTTTGTCTCTTCG 236
|||||||||||||||||||||||||||||||| ||||||| |||||| ||| |||||||
Sbjct 184 TTAAACCACCGGTTAAGAGATCTCTCACTCTCCTCATCGTGACTTACTTTTTTCTCTTCT 243
Query 237 TCGGCTCCATCGCTTCGAGCCTTCTCGCGAAGTACTACTTCGTCCACGGTGGCTCGAGCC 296
||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 244 TCGGCTCTATCGCTTCGAGCCTTCTCGCGAAGTACTATTTCGTCTACGGTGGCTCGAGCC 303
Query 297 GGTGGGTCTCGACGTGGGTTCAATCCGCTGGCTTCCCTCTCCTCCTCACCCTAATCTACT 356
|||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 304 GGTGGGTCTCCACGTGGGTTCAATCTGCTGGCTTCCCTCTCCTCCTCATCCTAATCTACT 363
Query 357 TCCCTCGCTATGTTTTCAAAACCACCACCCGCCGTCCTTTCACGCGCTTCACGCGCCGCC 416
|||||| ||| ||| ||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 364 TCCCTCACTACGTTCTCAAAACCACCACTCGCCGTCCTTTCACGCGCTTCACGCTCCGCC 423
Query 417 ATCTCATCTTCTCCGTGTTGATCGGGTTTGTTCTCGGTTTCAACAACTTCCTCTTCTCAT 476
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 424 ATCTCATCTTCTCCGTGTTGATCGGGCTTGTTCTCGGTTTCAACAACTTCCTCTTCTCAT 483
Query 477 GGGGAACCTCGTACCTTCCGGTGTCCACGTCATCGCTTCTCCTCTCGACACAACTTGTCT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 484 GGGGAACCTCGTACCTTCCGGTGTCCACGTCATCGCTTCTCCTCTCGACACAACTCGTCT 543
Query 537 TCACTCTCATTTTGTCT-GCGATCATTGTGAAACAGAAAATCAATTTCTCAAACCTCAAC 595
||||||||||||||||| | |||||| ||||||||||| |||| ||||||||||||||||
Sbjct 544 TCACTCTCATTTTGTCTAG-GATCATAGTGAAACAGAAGATCACTTTCTCAAACCTCAAC 602
Query 596 TGTGTTGTTCTCTTGACGTTAAGCTCTGTTTTGTTGGCTCTCGGTTCGAGTAGAGATAAA 655
|| ||||| || ||||||||||||||||||||||||||||| | |||||||| |||||||
Sbjct 603 TGCGTTGTCCTGTTGACGTTAAGCTCTGTTTTGTTGGCTCTTGATTCGAGTAAAGATAAA 662
Query 656 CCGGCCGGTTTAACTAAAACCAAGTATTACATCGGGTTTGTATCCACGATCGGAGCCGGT 715
||| |||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 663 CCGTCCGGTTTAACCAAAACCAAGTATTTCATCGGGTATGTATCCACGATCGGAGCCGGT 722
Query 716 TTACTCTTCGCTCTTTACCTCCCCGTGACGGAGAAGCTATACCGTAGCGTTTATTGTTAC 775
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 723 TTACTCTTCGCTCTTTACCTCCCCGTGACGGAGAAGCTATACCGTACCGTTTATTGTTAC 782
Query 776 GCGATGGTCATGGAGGTGCAACTGGTGATGGAATTCGCTGCCACGGTTTTCGCGACAATC 835
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 783 GCGATGGTCATGGAGGTGCAACTGGTGATGGAATTCGCAGCGACGGTTTTCGCGACAATC 842
Query 836 GGTATGGTTTTCGACGGCGGGTTT-AGAGAAATGGTTAAGGAAGCTAACCATGTTTTCAC 894
||||||| || ||| ||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 843 GGTATGGCTTGCGAAGGCGGGTTTAAG-GAAATGGTTAAGGAAGCGAACCATGTTTTCAC 901
Query 895 CAAAGGACCAACAGTTTATTGGACGGTTGCGATTTTTGCGAATGTGGTGACGTGGCAGCT 954
||||||||||||| ||||||||||| ||||||| | || ||||||||||||||||||||
Sbjct 902 CAAAGGACCAACATTTTATTGGACGTTTGCGATACTAGCAAATGTGGTGACGTGGCAGCT 961
Query 955 CTGTTTCGCAGCCACGTCAGGGATAGTTTACTTGACCTCAGGTATCACCGGAGGTATCTG 1014
|| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 962 CTCTTTCGCAGCCACGTCAGGGATGGTTTACTTGACGTCAGGTATCACCGGAGGTATCTG 1021
Query 1015 CATGACGGCGTTGCTTGCGATGAATGTGATAGGAGGTGTGGTGGTTTACGGTGATGAGTT 1074
||||||||||||||| |||||||||||||||||||||||||||| ||||||||| | |||
Sbjct 1022 CATGACGGCGTTGCTCGCGATGAATGTGATAGGAGGTGTGGTGGCTTACGGTGACGTGTT 1081
Query 1075 TGGTGGAGTGAAGATTGTGTCGACGGTGCTATGTATTTGGGGATTCTCATCGTACATC-T 1133
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 1082 TGGTGGAGTGAAGATTGTGTCGACGGTGCTATGTATTTGGGGATTCTCATCTTACA-CAT 1140
Query 1134 ACGGGATGTATATGAAGATGAAGAAGGAGGAGAAGGAGAAGGGAGAATATTCTGGCGTAA 1193
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1141 ACGGGATGTATATGAAGATGAAGAAGGAGGAGAAGGAGAAGGGAGAATATTCCGGCGTAA 1200
Query 1194 AGACGACGGAAGACGGCGGAGAGATGGAGGTGGAAATGGGAAAAGTTAAAGATGACGTGG 1253
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1201 AGACGACGGAAGACAGCGGAGAGATGGAGGTGGAAATGGGAAATGTTAAAGATGACGTGG 1260
Query 1254 CGGCGGCGGATGATAGGGTTTGAAGATATCTGTGTGATTGAGACGGCCGTTATGATTATT 1313
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CGGCGGCGGATGATAGGGCTTGAAGATATCTGTGTGATTGAGACGGCCGTTATGATTATT 1320
Query 1314 ATTAGGAAGGAAG-C--C---aaaaaaaaaaGTAGTAGTAtcttttttgtgttctttctt 1367
||||||||||||| | | ||||||||||||||||||||| |||||||||||||||||
Sbjct 1321 ATTAGGAAGGAAGCCAACAAAAAAAAAAAAAGTAGTAGTATC-TTTTTGTGTTCTTTCTT 1379
Query 1368 tttctcaccttatttttttttagtaatgcatttgcttttgttttggttgttgtttttagg 1427
||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1380 TTTCTCACCTTATGTTTTTTTAGTAATGCATTTGCTTTTGTTTTTCTTGTT-TTTTTAGG 1438
Query 1428 ttgttttgtttttccttttctggttatttttATGAATTATCCTCTTATCATGGCCACAAC 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TTGTTTTGTTTTTCCTTTTCTGGTTATTTTTATGAATTATCCTCTTATCATGGCCACAAC 1498
Query 1488 TAATGATGTTGTACACTTTTTAAGTGTGGATTTTCCAATGTGGGTCGATAAGTATGTATT 1547
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1499 TAATGATGTTGTACACTTTTTAAGTGTGGATTTTCCAATGTCGGTTGATAAGTATGTATT 1558
Query 1548 TTTCTGTTATCTATGG 1563
||||||||||||||||
Sbjct 1559 TTTCTGTTATCTATGG 1574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77158237665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5