BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473326

Length=569
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G30845.1 | Symbols:  | unknown protein; Has 120 Blast hits t...   710    0.0  


> AT1G30845.1 | Symbols:  | unknown protein; Has 120 Blast hits 
to 120 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa 
- 35; Fungi - 37; Plants - 23; Viruses - 0; Other Eukaryotes 
- 25 (source: NCBI BLink). | chr1:10979646-10980688 FORWARD 
LENGTH=729
Length=729

 Score =  710 bits (384),  Expect = 0.0
 Identities = 493/544 (91%), Gaps = 13/544 (2%)
 Strand=Plus/Plus

Query  1    CTTGTTCAATTTTCAGATTTGATAGCTCTCAAAATCG-T----TA-AG----G-AAATTG  49
            ||| ||||||||||||||||||||||||||||||||| |    || ||    | |||  |
Sbjct  25   CTTCTTCAATTTTCAGATTTGATAGCTCTCAAAATCGTTAAACTACAGAAACGAAAAAGG  84

Query  50   CGATTAAAACGATCTTGAGGTTAAATCCATGGCTGATGCACAGTTGAAGAAAAGAGGCTA  109
              |||    ||||| | ||||||||||||||||||||||||| |||||| ||||||||||
Sbjct  85   AAATTGCGGCGATC-TAAGGTTAAATCCATGGCTGATGCACATTTGAAGCAAAGAGGCTA  143

Query  110  TATCTGGGCAATTTCAGCTGGACTCAATGCAGCTCTTGCCGCCATTTCAGCCAAGTTCTT  169
            ||||| |||| || ||||||||||||||||||||||||| || || || || ||||||||
Sbjct  144  TATCTCGGCAGTTGCAGCTGGACTCAATGCAGCTCTTGCAGCAATCTCTGCTAAGTTCTT  203

Query  170  CTCATCTCTCGTGATTAAGTATGGATTAGTTGTAATCTGCAATGTGGTTATGTGGGCATG  229
            | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  204  CACATCTCTTGTGATTAAGTATGGATTAGTTGTAATCTGCAATGTGGTTATGTGGGCATG  263

Query  230  TTATGTTAACAGCTTAAGAGCTTTGTCCTCTCTTCAAGCTACTGTCACAAACTTTGCTGC  289
            |||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  264  TTATGTAAACAGTTTAAGAGCTTTGTCCTCTCTACAAGCTACTGTCACAAACTTTGCTGC  323

Query  290  TAATTTTCTATCTTCTGGTTTAGCTGGACTCTTTCTTTTTCAAGAATCGTTGTCGTTTCG  349
            ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct  324  TAATTTTCTATCTTCTGGTTTAGCTGGTCTCTTTCTTTTTCAAGAATCGTTATCGTTTCG  383

Query  350  TTGGTTTGCGGGAGCTTTATCGATCACTATCGGAGTTCTAATCCTCAGTAAGTCGAGTGT  409
            |||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||
Sbjct  384  TTGGTTTGCGGGAGCTTTATCGATTACTACCGGAGTTCTTATCCTCAGTAAGTCGAGTGT  443

Query  410  CGATAAGAAGGTTAGCTCGGATTAATCAAGAATTGA-TATAATAGCTTTTGTTTTGGAGA  468
            |||||||||||| |||||||||||||  ||||| || ||| ||||||| |||||||||||
Sbjct  444  CGATAAGAAGGTAAGCTCGGATTAATGGAGAATCGAATATGATAGCTTCTGTTTTGGAGA  503

Query  469  AGGCTACTTTTGGTTGAAAGGAATTAGACATGTTAAGTTGTTCTGAGTTTTGAGTTTTAG  528
            ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  504  AGGCTGCTTTTGGTTGAAAGGAATTAGAGATGTTAAGTTGTTCTGAGTTTTGAGTTTTAG  563

Query  529  AGGT  532
            ||||
Sbjct  564  AGGT  567



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27327375968


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5