BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473328
Length=2552
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30860.1 | Symbols: | RING/U-box superfamily protein | chr1... 3258 0.0
> AT1G30860.1 | Symbols: | RING/U-box superfamily protein | chr1:10986523-10989504
REVERSE LENGTH=2624
Length=2624
Score = 3258 bits (1764), Expect = 0.0
Identities = 2255/2486 (91%), Gaps = 57/2486 (2%)
Strand=Plus/Plus
Query 98 AAAACAGAGTTGTCCTCTAACTTCTTTCGATCGCTTC-AAAACTCTAATGGGCATTTGAG 156
||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||
Sbjct 162 AAAACAGAGTTGTCCTCTAACTTCTTTCGATCGATTCAAAAACTCTAATGATTATTTGAT 221
Query 157 TTTGTGTTCGATTT-TTCGATTCTTAGATTGTTaaaaaaaTGGCGTC-T-T-CTCAAAGA 212
||| |||||| ||| |||||||||||||| | ||||||||||| ||| | | |||| |||
Sbjct 222 TTTATGTTCG-TTTGTTCGATTCTTAGATCG-TAAAAAAATGGTGTCTTCTCCTCAGAGA 279
Query 213 TTCGGTTTAGTCTTAAGAGATCGTAATCAAAACGCTGGCGTTTACCAGACGAATCTGAAA 272
||||||||| |||||||||||||||| |||||||||||||||| || | ||||||||||
Sbjct 280 TTCGGTTTAATCTTAAGAGATCGTAACCAAAACGCTGGCGTTTTTCAAAAGAATCTGAAA 339
Query 273 TCTCCGGTGAAAGAGGTTTTCAAATTTCATGTCTCCGATGAGAATTTGGTCGATTCTTGG 332
|||||||||||||||||||| |||| ||||||||||||||||||||| || |||||||||
Sbjct 340 TCTCCGGTGAAAGAGGTTTTGAAATCTCATGTCTCCGATGAGAATTTAGTTGATTCTTGG 399
Query 333 ATCGAGACTCACAATAACAAGAACAATCGTGTTCTTGAATCTCCAG-TAGAATCGAAGAG 391
||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 400 ATCGAAACTCACAATAACAAGAACAATCGTGTTCTTGAATCTCC-GTTAGAATCGAAGAG 458
Query 392 AAATGATAGTCCCGGT-GCTTCTTCTCTGGTTCAGATATGGGAGGCGAGGCTAAACCGAT 450
||| || | | | || ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 459 AAACGACAAT-CTTGTGGCTTCTTCTTTGGTTCAGATATGGGAGGCGAGGCTAAACCGAT 517
Query 451 CCAACGGCGGAAACTCGCCGAGCAGCTGCCAATCGAC-G-GTG-AGTAGTAGTCGGAGCG 507
||||||| |||||||||||||| ||| | ||||| || | | | ||||||||||||||||
Sbjct 518 CCAACGGTGGAAACTCGCCGAGTAGCAGTCAATCTACGGCGAGTAGTAGTAGTCGGAGCG 577
Query 508 AGTCAGGACTCGGTGTTC-AGAATTCCGGTCTTTCAGAATCTTCATCAATCGACGGAGAT 566
| |||||| | |||||| || ||||||||||||||||||||||||||||||| ||||||
Sbjct 578 ATTCAGGAGTTAGTGTTCAAG-ATTCCGGTCTTTCAGAATCTTCATCAATCGATGGAGAT 636
Query 567 TCTGAATTTGTTGATCGAACGGTGGAGATTGAATCTAGGTCACATGGTTTGGTTTCTGAT 626
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 TCTGAAATTGCTGATCGAACGGTGGAGATTGAATCTAGGTCACATGGTTTGGTTTCTGAT 696
Query 627 TCTGGAGAGAGCAAATGGGGACGAGTCGCTGACTTAATTCGGAGACTTAGCAACGAAGAG 686
|| ||||| || ||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 697 TCCGGAGAAAGTAAATGGGGACGAGTCGCTGACCTAATTCGGAGGCTTAGCAACGAAGAC 756
Query 687 AAGAAACTAACCGCCGGAGATAATGGCAGCGGTGGTGGCGGTGGACTC-ACGATTGTCAG 745
||||||| |||||| ||||||||||||||||| ||||||||||||||| | |||| ||||
Sbjct 757 AAGAAACGAACCGCTGGAGATAATGGCAGCGGCGGTGGCGGTGGACTCGA-GATTATCAG 815
Query 746 AACGCCGAGGCCTTGTTGCACTTCGTCGTCGTCGGAGAAAAGTAATTTTCCGGTGGTTAG 805
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 816 AACGCCGAGGCCTTATTGCACTTCGTCGTCATCGGAGAAAAGTAATTTTCCGGTGGTTAG 875
Query 806 TTTCTCTCCGAGGATTCGAGGACGGCAAGCGTTTACCGATTTGCTTATGCAAATGGAACG 865
||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 876 TTTCTCTCCGAAGATACGAGGACGACAAGCGTTTACCGATTTTCTTATGCAAATGGAACG 935
Query 866 CGATCGCCACCGCGAATTGGATTGGCTTCTTGACCGCAACGCAGTTTCTAGGTTTACTCA 925
||||||||||| |||||||||| |||| |||| ||||||||||||||||||||||||||
Sbjct 936 TGATCGCCACCGTGAATTGGATTCGCTTTTTGAACGCAACGCAGTTTCTAGGTTTACTCA 995
Query 926 ACGTGGTCGTCTCCAGTCAATGCTAAAGCTAAGGAACCTCAATAGCTGTCTTGCGATTCA 985
|||||||||||||||||||||||||| | |||||||||||||| ||||||||| ||||||
Sbjct 996 ACGTGGTCGTCTCCAGTCAATGCTAAGGTTAAGGAACCTCAATCGCTGTCTTGTGATTCA 1055
Query 986 AGATAGAAACCGGTCTAACGCAAAAACAACCGGATCAAACCGAATCGGATCAGGCTCTGC 1045
||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct 1056 AGATAGAAACCGGTCTAACGCAAAAACAACCGGATTAAACCGAATTGAATCAGGCTCTGC 1115
Query 1046 AGTTCTGCATTTAAGGGAGAAA-TT--T-C--A--T-GTAAACGCTGCGGCTGCAGCAGA 1096
||||||||||||||||||||| || | | | | |||||| ||||||||||| ||||
Sbjct 1116 TGTTCTGCATTTAAGGGAGAAATTTCATGCGAACGTAGTAAACTCTGCGGCTGCAACAGA 1175
Query 1097 TAAAAGGAAGAATCATCAACGATCCGCTGAGAT-ATATAACAAATCCGTAGAAGAAACAG 1155
||| ||||||||||||||||||||| ||||||| | | ||||||||||||||||||||||
Sbjct 1176 TAAGAGGAAGAATCATCAACGATCCACTGAGATGA-ACAACAAATCCGTAGAAGAAACAG 1234
Query 1156 AAGGAACTACTACCACAAGCATGAGGTTGAAGAACGGCGGTCTTACTCTCGAAGCTTTTT 1215
||||||||||||||||||||| |||||| ||| | || ||| ||||||||||||||||||
Sbjct 1235 AAGGAACTACTACCACAAGCACGAGGTTAAAGGATGGTGGTGTTACTCTCGAAGCTTTTT 1294
Query 1216 TCGCAGAGCGTTTGAGAGTCCGTAACCGCAAGATAGAGGAAGCAACCTTATCTAAGGAAG 1275
|||||||||| |||||| ||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1295 TCGCAGAGCGGTTGAGACCCCGTAACCGCAAGATAGAGGAAGCAACGTTATGTAAGGAAG 1354
Query 1276 AAGAAACAGTAAGTGGAAGTGTTGAATCA-AAAACGAAATGCCTTCAGCTGCaagaaaca 1334
||||| | |||||||||| ||||| ||| |||| ||| |||||||||||||||||||||
Sbjct 1355 AAGAATCTGTAAGTGGAACAGTTGATTCACAAAA-GAATTGCCTTCAGCTGCAAGAAACA 1413
Query 1335 aaagaagtagaagaaacttgcaatgatggcgagtctgagaagaaagaagaagaaaagaCA 1394
| ||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| ||
Sbjct 1414 AGAGAAGTAGAAGAAACTTGCAACGATGGCAAGTCTGAAAAGAAAGAAGAAGAAAATACT 1473
Query 1395 AGCCCGAGCGGATGTTTGA-CTCAAGAATCGCGGTTGAGACAGAATCAAGGCGAGAACAA 1453
|||||||| | || ||| | ||| |||||||||||||||||||||||||| |||||||||
Sbjct 1474 AGCCCGAGTGAATATTT-ATCTCGAGAATCGCGGTTGAGACAGAATCAAGACGAGAACAA 1532
Query 1454 TGTGGAAAAGTATATGCAAGAAACTCGAGAAACAGAAGGTCTGGTTCATGATAGTAATGA 1513
||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1533 TGTGGGAAAGTATATGCAAGAAACTCGAGAAACAGAAGGTCTAGTTCATGAGAGTAATGA 1592
Query 1514 GATGGACCAGTGCCTTGATCAACAAGAAACGTCATATTTGAATAGATGGGGAGAACAAGA 1573
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1593 GATGGACCAGTGCCTTGATCAACAAGAAACATCCTATTTGAATAGATGGGGAGAACAAGA 1652
Query 1574 AGAGTATGAAGATGAGCAGTCTTATTATGGAGAACCGAATGACGACTGGCTTAGTGAAAT 1633
|||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1653 AGAGTATGCAGATGAGCAGTCTTATTATGGAGAATATAACGACGACTGGCTTAGTGAAAT 1712
Query 1634 ATCTAGGCCTCGGAGTTACTGGGAGGAATTGAGGAAGTCACGGTACCTGGAAGTAATGAA 1693
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1713 AGCTAGGCCTCGGAGTTACTGGGAGGAATTGAGGAAGTCACGGTACCTGGAAGTAATGAA 1772
Query 1694 CACTCGGTCTGAGAGAGAGGACATACGCAGACTCCTTGAGCGGAGAACTGTGACAGATTT 1753
|||| ||||||||| ||| |||||| |||||||||||||||| ||||| |||||||||||
Sbjct 1773 CACTAGGTCTGAGAAAGATGACATATGCAGACTCCTTGAGCGAAGAACGGTGACAGATTT 1832
Query 1754 TCTGGAGAGCGGGTTGCGAGAGAAGATCGATAATCTCATGATGTCCCGCGTGCAGACACA 1813
|| || ||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1833 CCTCGACAGCGGGTTGCGAGAGAAGATCGATAATCTCATGATGTCCCGTGTACAGACACA 1892
Query 1814 CTCGAATAAGCATTCTGAAAAATGGGAATTGCAACAAGAGGATGAGgaag-ag-aaa-aa 1870
|||| ||||||| || |||||||||||||||||||||| || ||||| | || |||
Sbjct 1893 CTCGGATAAGCACTCCAAAAAATGGGAATTGCAACAAGAAGAAGAGGAGGAAGTAAATTT 1952
Query 1871 tgaaactgaagaagaagtcaaagaagaagagccatt-agcgaaaggcgaagagcaagaCG 1929
||||| ||| |||||| || | ||||||||||||| || | ||| ||||||||||| |
Sbjct 1953 TGAAATTGATGAAGAAATC--A-AAGAAGAGCCATTAAGAG-GAGGTGAAGAGCAAGATG 2008
Query 1930 ATAGAGATGATTTGAGCCAATCTTCTTCTTCACAGATATTTGCATCGTCTCCTGCAGGAT 1989
|||||||||| ||||||||||| || |||||||| |||| ||||||||||||||||||||
Sbjct 2009 ATAGAGATGACTTGAGCCAATCGTCGTCTTCACATATATCTGCATCGTCTCCTGCAGGAT 2068
Query 1990 CATGGAGTTCTCAAGACACTGACGTGACTTCCACTCCTGTCTT-ATCTGTTCACAATCCT 2048
|||||||||||||||||||||| || ||||||||||||| ||| | |||||| ||||||
Sbjct 2069 CATGGAGTTCTCAAGACACTGATGTTACTTCCACTCCTGCCTTGGT-TGTTCAGAATCCT 2127
Query 2049 CATTCACCTGAAATGGAGCTGATAAGCGGTATGAGATCACAAATCCAACAGCTTCAGCAA 2108
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2128 CAGTCACCTGAAATGGAGCTGATAAGCGGTATGAGATCACAGATCCAACAGCTTCAGCAA 2187
Query 2109 GAAATGTCAGTACTACGAGATTCTGTCAAAACGTGTTTAGATGCTAACGCGAGCTTACAA 2168
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2188 GAAATGTCAGTACTACGAGATTCTGTCAAAACGTGTTTAGATGCTAACGCGAGCTTGCAA 2247
Query 2169 CAGAAAGTTCACCGAGAAAACCCAATGAAACGAAAATGCTGCGTCTGCGACGAAACACAG 2228
|| || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2248 CACAAGGCTCACCAAGAAAACCCAATGAAACGAAAATGCTGCGTCTGCGACGAAACACAG 2307
Query 2229 GTCGAGGCGGTTTTGTATAGGTGCGGACATATGTGCATGTGCCTAAAATGTGCCAACGAA 2288
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2308 GTCGAGGCGGTTTTGTACAGGTGTGGACATATGTGCATGTGCCTAAAATGTGCCAACGAA 2367
Query 2289 CTACACTGGAGTGGAGGGAAATGTCCGATTTGCCGAGCTCAGATTGTGGACGTTGTTCGT 2348
||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 2368 CTACATTGGAGTGGAGGGAAATGTCCGATTTGCAGAGCTCAGATTGTTGACGTTGTTCGT 2427
Query 2349 GTCTTCTTCGATACAAGTAACTGAAATAAACCGTTTTAAAAACGCTGACA-AATTCTCTA 2407
||| ||| ||||||||| ||||||||| ||||||||| |||||||||| | ||||| |||
Sbjct 2428 GTCATCTACGATACAAGAAACTGAAATCAACCGTTTTGAAAACGCTGA-AGAATTCACTA 2486
Query 2408 ACCCATTAGGCCATTACACCCTCTTTTTGTTCTTATCGCGTTTGCGTTATTTGGCGTTTT 2467
|||||||| | || || |||||| ||||||| |||||||||||||||||||||
Sbjct 2487 ACCCATTA----A--AC-CC-TCTTTTC---CTTATCGAGTTTGCGTTATTTGGCGTTTT 2535
Query 2468 GGATCTGAATATCGTATTATGCTCTCTTTATACAGTATT-AGGTTATGTTACCAACATTT 2526
|| ||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 2536 GGGTCTGAATATCGTATTATGCTCTCTTTATACAGTTTTTAGGTTATGTTACCAACACTT 2595
Query 2527 TGTCCAGTTTTAAGAAGCTTTTGATC 2552
|||||||||||| |||| ||||||||
Sbjct 2596 TGTCCAGTTTTATGAAGTTTTTGATC 2621
Score = 99.0 bits (53), Expect = 2e-19
Identities = 88/103 (85%), Gaps = 9/103 (9%)
Strand=Plus/Plus
Query 7 CTTCTTCATCGT-ATC-TATCTCCACC----AATTGTTGTTGTTCTGTTTCTTTAACAGG 60
|||||||||| | ||| |||||||||| |||||||||||||||||||||||||||
Sbjct 26 CTTCTTCATCATCATCGTATCTCCACCGTTTGTTTGTTGTTGTTCTGTTTCTTTAACAGG 85
Query 61 AAAAAA---CAGAGAGAAAAATCTGTGTTTTCACTAACCCAAA 100
|||||| ||||||||||||||||| | ||||||||| ||||
Sbjct 86 AAAAAAAAACAGAGAGAAAAATCTGTCTCTTCACTAACACAAA 128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126671531075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5