BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473328 Length=2552 Score E Sequences producing significant alignments: (Bits) Value AT1G30860.1 | Symbols: | RING/U-box superfamily protein | chr1... 3258 0.0 > AT1G30860.1 | Symbols: | RING/U-box superfamily protein | chr1:10986523-10989504 REVERSE LENGTH=2624 Length=2624 Score = 3258 bits (1764), Expect = 0.0 Identities = 2255/2486 (91%), Gaps = 57/2486 (2%) Strand=Plus/Plus Query 98 AAAACAGAGTTGTCCTCTAACTTCTTTCGATCGCTTC-AAAACTCTAATGGGCATTTGAG 156 ||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||| Sbjct 162 AAAACAGAGTTGTCCTCTAACTTCTTTCGATCGATTCAAAAACTCTAATGATTATTTGAT 221 Query 157 TTTGTGTTCGATTT-TTCGATTCTTAGATTGTTaaaaaaaTGGCGTC-T-T-CTCAAAGA 212 ||| |||||| ||| |||||||||||||| | ||||||||||| ||| | | |||| ||| Sbjct 222 TTTATGTTCG-TTTGTTCGATTCTTAGATCG-TAAAAAAATGGTGTCTTCTCCTCAGAGA 279 Query 213 TTCGGTTTAGTCTTAAGAGATCGTAATCAAAACGCTGGCGTTTACCAGACGAATCTGAAA 272 ||||||||| |||||||||||||||| |||||||||||||||| || | |||||||||| Sbjct 280 TTCGGTTTAATCTTAAGAGATCGTAACCAAAACGCTGGCGTTTTTCAAAAGAATCTGAAA 339 Query 273 TCTCCGGTGAAAGAGGTTTTCAAATTTCATGTCTCCGATGAGAATTTGGTCGATTCTTGG 332 |||||||||||||||||||| |||| ||||||||||||||||||||| || ||||||||| Sbjct 340 TCTCCGGTGAAAGAGGTTTTGAAATCTCATGTCTCCGATGAGAATTTAGTTGATTCTTGG 399 Query 333 ATCGAGACTCACAATAACAAGAACAATCGTGTTCTTGAATCTCCAG-TAGAATCGAAGAG 391 ||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 400 ATCGAAACTCACAATAACAAGAACAATCGTGTTCTTGAATCTCC-GTTAGAATCGAAGAG 458 Query 392 AAATGATAGTCCCGGT-GCTTCTTCTCTGGTTCAGATATGGGAGGCGAGGCTAAACCGAT 450 ||| || | | | || ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 459 AAACGACAAT-CTTGTGGCTTCTTCTTTGGTTCAGATATGGGAGGCGAGGCTAAACCGAT 517 Query 451 CCAACGGCGGAAACTCGCCGAGCAGCTGCCAATCGAC-G-GTG-AGTAGTAGTCGGAGCG 507 ||||||| |||||||||||||| ||| | ||||| || | | | |||||||||||||||| Sbjct 518 CCAACGGTGGAAACTCGCCGAGTAGCAGTCAATCTACGGCGAGTAGTAGTAGTCGGAGCG 577 Query 508 AGTCAGGACTCGGTGTTC-AGAATTCCGGTCTTTCAGAATCTTCATCAATCGACGGAGAT 566 | |||||| | |||||| || ||||||||||||||||||||||||||||||| |||||| Sbjct 578 ATTCAGGAGTTAGTGTTCAAG-ATTCCGGTCTTTCAGAATCTTCATCAATCGATGGAGAT 636 Query 567 TCTGAATTTGTTGATCGAACGGTGGAGATTGAATCTAGGTCACATGGTTTGGTTTCTGAT 626 |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 637 TCTGAAATTGCTGATCGAACGGTGGAGATTGAATCTAGGTCACATGGTTTGGTTTCTGAT 696 Query 627 TCTGGAGAGAGCAAATGGGGACGAGTCGCTGACTTAATTCGGAGACTTAGCAACGAAGAG 686 || ||||| || ||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct 697 TCCGGAGAAAGTAAATGGGGACGAGTCGCTGACCTAATTCGGAGGCTTAGCAACGAAGAC 756 Query 687 AAGAAACTAACCGCCGGAGATAATGGCAGCGGTGGTGGCGGTGGACTC-ACGATTGTCAG 745 ||||||| |||||| ||||||||||||||||| ||||||||||||||| | |||| |||| Sbjct 757 AAGAAACGAACCGCTGGAGATAATGGCAGCGGCGGTGGCGGTGGACTCGA-GATTATCAG 815 Query 746 AACGCCGAGGCCTTGTTGCACTTCGTCGTCGTCGGAGAAAAGTAATTTTCCGGTGGTTAG 805 |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 816 AACGCCGAGGCCTTATTGCACTTCGTCGTCATCGGAGAAAAGTAATTTTCCGGTGGTTAG 875 Query 806 TTTCTCTCCGAGGATTCGAGGACGGCAAGCGTTTACCGATTTGCTTATGCAAATGGAACG 865 ||||||||||| ||| |||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 876 TTTCTCTCCGAAGATACGAGGACGACAAGCGTTTACCGATTTTCTTATGCAAATGGAACG 935 Query 866 CGATCGCCACCGCGAATTGGATTGGCTTCTTGACCGCAACGCAGTTTCTAGGTTTACTCA 925 ||||||||||| |||||||||| |||| |||| |||||||||||||||||||||||||| Sbjct 936 TGATCGCCACCGTGAATTGGATTCGCTTTTTGAACGCAACGCAGTTTCTAGGTTTACTCA 995 Query 926 ACGTGGTCGTCTCCAGTCAATGCTAAAGCTAAGGAACCTCAATAGCTGTCTTGCGATTCA 985 |||||||||||||||||||||||||| | |||||||||||||| ||||||||| |||||| Sbjct 996 ACGTGGTCGTCTCCAGTCAATGCTAAGGTTAAGGAACCTCAATCGCTGTCTTGTGATTCA 1055 Query 986 AGATAGAAACCGGTCTAACGCAAAAACAACCGGATCAAACCGAATCGGATCAGGCTCTGC 1045 ||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||| Sbjct 1056 AGATAGAAACCGGTCTAACGCAAAAACAACCGGATTAAACCGAATTGAATCAGGCTCTGC 1115 Query 1046 AGTTCTGCATTTAAGGGAGAAA-TT--T-C--A--T-GTAAACGCTGCGGCTGCAGCAGA 1096 ||||||||||||||||||||| || | | | | |||||| ||||||||||| |||| Sbjct 1116 TGTTCTGCATTTAAGGGAGAAATTTCATGCGAACGTAGTAAACTCTGCGGCTGCAACAGA 1175 Query 1097 TAAAAGGAAGAATCATCAACGATCCGCTGAGAT-ATATAACAAATCCGTAGAAGAAACAG 1155 ||| ||||||||||||||||||||| ||||||| | | |||||||||||||||||||||| Sbjct 1176 TAAGAGGAAGAATCATCAACGATCCACTGAGATGA-ACAACAAATCCGTAGAAGAAACAG 1234 Query 1156 AAGGAACTACTACCACAAGCATGAGGTTGAAGAACGGCGGTCTTACTCTCGAAGCTTTTT 1215 ||||||||||||||||||||| |||||| ||| | || ||| |||||||||||||||||| Sbjct 1235 AAGGAACTACTACCACAAGCACGAGGTTAAAGGATGGTGGTGTTACTCTCGAAGCTTTTT 1294 Query 1216 TCGCAGAGCGTTTGAGAGTCCGTAACCGCAAGATAGAGGAAGCAACCTTATCTAAGGAAG 1275 |||||||||| |||||| ||||||||||||||||||||||||||| |||| |||||||| Sbjct 1295 TCGCAGAGCGGTTGAGACCCCGTAACCGCAAGATAGAGGAAGCAACGTTATGTAAGGAAG 1354 Query 1276 AAGAAACAGTAAGTGGAAGTGTTGAATCA-AAAACGAAATGCCTTCAGCTGCaagaaaca 1334 ||||| | |||||||||| ||||| ||| |||| ||| ||||||||||||||||||||| Sbjct 1355 AAGAATCTGTAAGTGGAACAGTTGATTCACAAAA-GAATTGCCTTCAGCTGCAAGAAACA 1413 Query 1335 aaagaagtagaagaaacttgcaatgatggcgagtctgagaagaaagaagaagaaaagaCA 1394 | ||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| || Sbjct 1414 AGAGAAGTAGAAGAAACTTGCAACGATGGCAAGTCTGAAAAGAAAGAAGAAGAAAATACT 1473 Query 1395 AGCCCGAGCGGATGTTTGA-CTCAAGAATCGCGGTTGAGACAGAATCAAGGCGAGAACAA 1453 |||||||| | || ||| | ||| |||||||||||||||||||||||||| ||||||||| Sbjct 1474 AGCCCGAGTGAATATTT-ATCTCGAGAATCGCGGTTGAGACAGAATCAAGACGAGAACAA 1532 Query 1454 TGTGGAAAAGTATATGCAAGAAACTCGAGAAACAGAAGGTCTGGTTCATGATAGTAATGA 1513 ||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 1533 TGTGGGAAAGTATATGCAAGAAACTCGAGAAACAGAAGGTCTAGTTCATGAGAGTAATGA 1592 Query 1514 GATGGACCAGTGCCTTGATCAACAAGAAACGTCATATTTGAATAGATGGGGAGAACAAGA 1573 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1593 GATGGACCAGTGCCTTGATCAACAAGAAACATCCTATTTGAATAGATGGGGAGAACAAGA 1652 Query 1574 AGAGTATGAAGATGAGCAGTCTTATTATGGAGAACCGAATGACGACTGGCTTAGTGAAAT 1633 |||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 1653 AGAGTATGCAGATGAGCAGTCTTATTATGGAGAATATAACGACGACTGGCTTAGTGAAAT 1712 Query 1634 ATCTAGGCCTCGGAGTTACTGGGAGGAATTGAGGAAGTCACGGTACCTGGAAGTAATGAA 1693 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1713 AGCTAGGCCTCGGAGTTACTGGGAGGAATTGAGGAAGTCACGGTACCTGGAAGTAATGAA 1772 Query 1694 CACTCGGTCTGAGAGAGAGGACATACGCAGACTCCTTGAGCGGAGAACTGTGACAGATTT 1753 |||| ||||||||| ||| |||||| |||||||||||||||| ||||| ||||||||||| Sbjct 1773 CACTAGGTCTGAGAAAGATGACATATGCAGACTCCTTGAGCGAAGAACGGTGACAGATTT 1832 Query 1754 TCTGGAGAGCGGGTTGCGAGAGAAGATCGATAATCTCATGATGTCCCGCGTGCAGACACA 1813 || || ||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1833 CCTCGACAGCGGGTTGCGAGAGAAGATCGATAATCTCATGATGTCCCGTGTACAGACACA 1892 Query 1814 CTCGAATAAGCATTCTGAAAAATGGGAATTGCAACAAGAGGATGAGgaag-ag-aaa-aa 1870 |||| ||||||| || |||||||||||||||||||||| || ||||| | || ||| Sbjct 1893 CTCGGATAAGCACTCCAAAAAATGGGAATTGCAACAAGAAGAAGAGGAGGAAGTAAATTT 1952 Query 1871 tgaaactgaagaagaagtcaaagaagaagagccatt-agcgaaaggcgaagagcaagaCG 1929 ||||| ||| |||||| || | ||||||||||||| || | ||| ||||||||||| | Sbjct 1953 TGAAATTGATGAAGAAATC--A-AAGAAGAGCCATTAAGAG-GAGGTGAAGAGCAAGATG 2008 Query 1930 ATAGAGATGATTTGAGCCAATCTTCTTCTTCACAGATATTTGCATCGTCTCCTGCAGGAT 1989 |||||||||| ||||||||||| || |||||||| |||| |||||||||||||||||||| Sbjct 2009 ATAGAGATGACTTGAGCCAATCGTCGTCTTCACATATATCTGCATCGTCTCCTGCAGGAT 2068 Query 1990 CATGGAGTTCTCAAGACACTGACGTGACTTCCACTCCTGTCTT-ATCTGTTCACAATCCT 2048 |||||||||||||||||||||| || ||||||||||||| ||| | |||||| |||||| Sbjct 2069 CATGGAGTTCTCAAGACACTGATGTTACTTCCACTCCTGCCTTGGT-TGTTCAGAATCCT 2127 Query 2049 CATTCACCTGAAATGGAGCTGATAAGCGGTATGAGATCACAAATCCAACAGCTTCAGCAA 2108 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2128 CAGTCACCTGAAATGGAGCTGATAAGCGGTATGAGATCACAGATCCAACAGCTTCAGCAA 2187 Query 2109 GAAATGTCAGTACTACGAGATTCTGTCAAAACGTGTTTAGATGCTAACGCGAGCTTACAA 2168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2188 GAAATGTCAGTACTACGAGATTCTGTCAAAACGTGTTTAGATGCTAACGCGAGCTTGCAA 2247 Query 2169 CAGAAAGTTCACCGAGAAAACCCAATGAAACGAAAATGCTGCGTCTGCGACGAAACACAG 2228 || || | ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2248 CACAAGGCTCACCAAGAAAACCCAATGAAACGAAAATGCTGCGTCTGCGACGAAACACAG 2307 Query 2229 GTCGAGGCGGTTTTGTATAGGTGCGGACATATGTGCATGTGCCTAAAATGTGCCAACGAA 2288 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 2308 GTCGAGGCGGTTTTGTACAGGTGTGGACATATGTGCATGTGCCTAAAATGTGCCAACGAA 2367 Query 2289 CTACACTGGAGTGGAGGGAAATGTCCGATTTGCCGAGCTCAGATTGTGGACGTTGTTCGT 2348 ||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 2368 CTACATTGGAGTGGAGGGAAATGTCCGATTTGCAGAGCTCAGATTGTTGACGTTGTTCGT 2427 Query 2349 GTCTTCTTCGATACAAGTAACTGAAATAAACCGTTTTAAAAACGCTGACA-AATTCTCTA 2407 ||| ||| ||||||||| ||||||||| ||||||||| |||||||||| | ||||| ||| Sbjct 2428 GTCATCTACGATACAAGAAACTGAAATCAACCGTTTTGAAAACGCTGA-AGAATTCACTA 2486 Query 2408 ACCCATTAGGCCATTACACCCTCTTTTTGTTCTTATCGCGTTTGCGTTATTTGGCGTTTT 2467 |||||||| | || || |||||| ||||||| ||||||||||||||||||||| Sbjct 2487 ACCCATTA----A--AC-CC-TCTTTTC---CTTATCGAGTTTGCGTTATTTGGCGTTTT 2535 Query 2468 GGATCTGAATATCGTATTATGCTCTCTTTATACAGTATT-AGGTTATGTTACCAACATTT 2526 || ||||||||||||||||||||||||||||||||| || ||||||||||||||||| || Sbjct 2536 GGGTCTGAATATCGTATTATGCTCTCTTTATACAGTTTTTAGGTTATGTTACCAACACTT 2595 Query 2527 TGTCCAGTTTTAAGAAGCTTTTGATC 2552 |||||||||||| |||| |||||||| Sbjct 2596 TGTCCAGTTTTATGAAGTTTTTGATC 2621 Score = 99.0 bits (53), Expect = 2e-19 Identities = 88/103 (85%), Gaps = 9/103 (9%) Strand=Plus/Plus Query 7 CTTCTTCATCGT-ATC-TATCTCCACC----AATTGTTGTTGTTCTGTTTCTTTAACAGG 60 |||||||||| | ||| |||||||||| ||||||||||||||||||||||||||| Sbjct 26 CTTCTTCATCATCATCGTATCTCCACCGTTTGTTTGTTGTTGTTCTGTTTCTTTAACAGG 85 Query 61 AAAAAA---CAGAGAGAAAAATCTGTGTTTTCACTAACCCAAA 100 |||||| ||||||||||||||||| | ||||||||| |||| Sbjct 86 AAAAAAAAACAGAGAGAAAAATCTGTCTCTTCACTAACACAAA 128 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 126671531075 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5