BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473329
Length=1169
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30870.1 | Symbols: | Peroxidase superfamily protein | chr1... 1661 0.0
> AT1G30870.1 | Symbols: | Peroxidase superfamily protein | chr1:10991485-10993023
FORWARD LENGTH=1238
Length=1238
Score = 1661 bits (899), Expect = 0.0
Identities = 1095/1187 (92%), Gaps = 23/1187 (2%)
Strand=Plus/Plus
Query 1 AAAATCATCAAAGCCAATCAAATAGAGATAGATATCAAGAAAGCAAAATAATGAAGTTGG 60
||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1 AAATTCATCAAAGCCAATCAAATTGAGAGAGATATCAAGAAAGCAAAATAATGAAGTTGG 60
Query 61 CCGTGATCTCAGTCGTCGTCCTACT-GGTGATTCTCGTGGCCTGGCCGGTATCGGCTAGC 119
||||| |||||||||| ||| |||| || | |||||||||| ||||||||||||||| ||
Sbjct 61 CCGTGGTCTCAGTCGTTGTCATACTCGGAG-TTCTCGTGGCTTGGCCGGTATCGGCTGGC 119
Query 120 CGGAAAGACTTACCCCGATCGGGAGGATACGGAGGCGATGACGATGATGATACAAAGTCA 179
|| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGAAAAGACTTACCTGGAGCGGGAGGATACGGAGGCGATGACGATGATGATACAAAGTCA 179
Query 180 TGGTTTCCTTTGGACAATCTATTATCGTTGAATTACTATGATAGGATTTGTCCAGATTTT 239
| ||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 180 TTGTTCCCTTTGGACAACCTATTATCGTTGAATTATTATGATAGGATTTGTCCAGATTTT 239
Query 240 GAGAAAATCGTTGATAGGAAAGTGAGGGAATGGACTAAGAGTGACTCTTCCCTTGGTCCC 299
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAGAAAATCGTTGTTACGAAAGTGAGGGAATGGACTAAGAGTGACTCTTCCCTTGGTCCC 299
Query 300 GCCCTCCTCCGCCTTATCTTCCACGACTGTGGTGTCACGGGATGTGATGCGTCTGTTCTT 359
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 300 GCCCTCCTCCGCCTTATCTTCCACGATTGTGGCGTCACGGGATGTGATGCGTCTGTTCTT 359
Query 360 CTAGACTACGAAGGGACAGAGAGAAGATCTTCGGCGAGCAAAAGC-CTAAGAGGCTTCGA 418
|||||||||||||||||||||||||||||| |||| ||||||| | ||||||||||||||
Sbjct 360 CTAGACTACGAAGGGACAGAGAGAAGATCTCCGGCTAGCAAAA-CACTAAGAGGCTTCGA 418
Query 419 GCTAATCGACGATATCAAGTCTGAGATGGAGAAATCTTGCCCCGG-ATTAGTCTCATGCG 477
|||||| |||||||||||||| |||||||||||||| |||||||| | ||| || ||||
Sbjct 419 GCTAATTGACGATATCAAGTCCGAGATGGAGAAATCATGCCCCGGCA-AAGTATCCTGCG 477
Query 478 CTGACATCCTAACATCAGCTAGTCGTGCTGCCACCGTCCAACTCGGTGGTCCTTACTGGC 537
| ||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||
Sbjct 478 CCGACATCCTAACATCAGCCAGCCGTGCCGCCACCGTCCAACTTGGTGGTCCTTACTGGC 537
Query 538 CCAACGTCTACGGTCGTCGTGATTCCAAAAACTCTTACGCTAGAGACGTTGAGAAAGTCC 597
|||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||
Sbjct 538 CCAACGTCTACGGTCGTCGTGACTCCAAACACTCTTACGCTAGAGACGTAGAGAAAGTCC 597
Query 598 CTTCAGGCCGCCGTGATGTTACCGCCCTTCTCGAAACGTCTCAGTCGTACGGTCTCAACA 657
|||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 598 CTTCAGGCCGTCGTGATGTTACCGCCCTTCTCGAAACGTTTCAGTCATACGGTCTCAACG 657
Query 658 TCCTCGACCTAGTTGTCCTCTCCGGTGCCCACACCATCGGAAAAGCCTACTGTGGTACCA 717
||||||||||||||||||| ||||| |||||||||||||||||||| | |||||| ||||
Sbjct 658 TCCTCGACCTAGTTGTCCTTTCCGGGGCCCACACCATCGGAAAAGCGTCCTGTGGCACCA 717
Query 718 TCCAGTCGAGGCTTTACAACTACAACGCAACCAATGGTTCAGATCCGTCGATTGACCCAA 777
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||
Sbjct 718 TCCAGTCGAGGCTTTACAACTACAACGCAACCAGTGGTTCAGATCCTTCGATTGACGCAA 777
Query 778 AATACGCAGATTACTTGCGACGCAGGTGTCGCTGGGCCTCTGAGACCGTTGAGCTCGACG 837
||||||| |||||||||| |||||||||||||||||||||||||||||| || ||||||
Sbjct 778 AATACGCTGATTACTTGCAACGCAGGTGTCGCTGGGCCTCTGAGACCGTCGATCTCGAC- 836
Query 838 CC-GTAACTCCAGCAGTGTTCGATAATCAGTACTACATTAATCTTCAGAAGCATATGGGA 896
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CCTGTAACTCCAGCAGTGTTCGATAATCAGTACTACATTAATCTTCAGAAGCATATGGGA 896
Query 897 GTTTTGTCGACTGATCAGGAGCTTGTTAAGGACCCAAGGACAGCTCCACTTGTAAAGGCT 956
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||
Sbjct 897 GTTTTGTCGACTGATCAGGAGCTTGTTAAGGACCCAAGGACTGCTCCGCTTGTAAAGACT 956
Query 957 TTCGCGGAGCAACCACCTCAGATGTTCAGACAACAGTTTGCTGTGTCAATGGCTAAGCTG 1016
||||| |||||| |||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 957 TTCGCAGAGCAATCACCTCAGATATTCAGACAGCAGTTTGCTGTGTCCATGGCTAAGCTG 1016
Query 1017 GTCAATGTTGGTGTCCTCACTGGTGAAGATCGTGTCGGAGAGATCAGGAAGGTTTGCAGC 1076
||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GTCAACGTTGGAGTTCTCACTGGTGAAGATCGTGTCGGAGAGATCAGGAAGGTTTGCAGC 1076
Query 1077 AAATCTAACTCCAGAGCTTACTAA-TAATAAAT-ATTATCCCTCATGAG-----T-TT-- 1126
|||||||||||||||||||||||| | |||| | || |||||||||||| | ||
Sbjct 1077 AAATCTAACTCCAGAGCTTACTAAATTATAA-TCATCATCCCTCATGAGAAGGATCTTTT 1135
Query 1127 GTT----GAAGTCATTTCTTGTTTGATTTTTGAGCTCTTTTCTATTG 1169
||| ||| | |||||||||||| |||||||||||||||||||||
Sbjct 1136 GTTTCTTGAAATAATTTCTTGTTTGGTTTTTGAGCTCTTTTCTATTG 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57379222935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5