BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473330

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G30880.1 | Symbols:  | unknown protein; Has 24 Blast hits to...   726    0.0  


> AT1G30880.1 | Symbols:  | unknown protein; Has 24 Blast hits 
to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa 
- 2; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:10993195-10994125 REVERSE 
LENGTH=616
Length=616

 Score =  726 bits (393),  Expect = 0.0
 Identities = 507/556 (91%), Gaps = 32/556 (6%)
 Strand=Plus/Plus

Query  7    CAACAATGGCGAAATCAATGAGATGCAAGAGAGTGAAGAGATTGAGAGCAATAAGAAGAG  66
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  65   CAACAATGGCGAAATCAATGAGATGCAAGAGGGTGAAGAGATTGAGAGCAATAAGAAGAG  124

Query  67   AAATAGTGGAGAAGGAATCATTCACTTTAACGAGAGAAGACGCCAAATCCGCCGCTATCG  126
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct  125  AAATAGTGGAGAAGGAATCATTCACTCTAACGAGAGAAGACGCCAAATCCGCCGCTATTG  184

Query  127  AAGCCGCACTCGCTGCTCCGAAGTTACCAGTTCGTCAA-CCTCCAGTTTCTCCGTTTATG  185
            |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct  185  AAGCCGCACTCGCTGCTCCGAAGTTACCAGTTCGTCAAGCC-CCAGTTTCTCCGTTTATG  243

Query  186  GAAGTTGCGACGCCGTCCTCTGAGTCTGCATCTGCCTCCACTACAATCGCCAACGATA-T  244
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  244  GAAGTTGCGACGCCTTCCTCTGAGTCTGCATCTGCCTCCACTACAATCGCCAACGATAGT  303

Query  245  GGATGTGGAAATGGATGATGAGAAGAAAACCAAGTTGCTTAAACCTATTGGGAAGAAGTT  304
            | ||| ||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||
Sbjct  304  G-ATGAGGAAATGGATGATGAGAAGAAAAACAAGTCGCTAAAACCTATTGGGAAGAAGTT  362

Query  305  GAAGAAGAAGTTTAAGCTGGGGATGAAGAATCGCCGCAGTAAGGGTGTCCTTCGAGGCAA  364
            ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct  363  GAAGAAGAAGTTTAAGCTGGGGATGAAGAATCGTCGTAGTAAGGGTGTCCTTCGAGGCAA  422

Query  365  ACGAAACTAAA-CGGGTCTTGGCTTTCTACTACTGG-TTTGTTT-CTACTTGCATAATTG  421
            ||||||||||| | |||||||||||||| ||||||| ||||||| |||||||||||||| 
Sbjct  423  ACGAAACTAAAACTGGTCTTGGCTTTCTTCTACTGGGTTTGTTTTCTACTTGCATAATTT  482

Query  422  G-GTTCT-TC--AAT---G---TT-T--AA-G----A-A-TATATCATCTTTTGTACTGT  461
              ||||| ||  |||   |   || |  || |    | | |||| |||||||||||||||
Sbjct  483  ATGTTCTCTCTTAATTTTGGGGTTCTTCAATGTCTTAGAATATAGCATCTTTTGTACTGT  542

Query  462  GtttttttCATGAGTTTCAGT-CTTATAGAAACCCTAAAAACGTGAT-GTCGTCTGA-TT  518
            ||||||| ||||||||||||| || |||||||||||||||||||||| | ||||||| ||
Sbjct  543  GTTTTTTCCATGAGTTTCAGTACT-ATAGAAACCCTAAAAACGTGATCG-CGTCTGAATT  600

Query  519  GTGCCTCCCATCTTTC  534
            ||| ||||||||||||
Sbjct  601  GTGTCTCCCATCTTTC  616



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25569180823


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5