BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473331
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30890.1 | Symbols: | Integral membrane HRF1 family protein... 1639 0.0
> AT1G30890.1 | Symbols: | Integral membrane HRF1 family protein
| chr1:10994321-10996134 FORWARD LENGTH=1042
Length=1042
Score = 1639 bits (887), Expect = 0.0
Identities = 990/1040 (95%), Gaps = 5/1040 (0%)
Strand=Plus/Plus
Query 1 ACTGTTTGATTTCTGAGGAAGAATCTATTGTTTCCATTAGAAGAAAGCTCTAACATTCTC 60
|||||||||||||||||| |||||| |||||||||||| ||||||| ||||||| |||||
Sbjct 1 ACTGTTTGATTTCTGAGG-AGAATCCATTGTTTCCATTTGAAGAAAACTCTAACTTTCTC 59
Query 61 GTCGAAGCTTTGAG--CTCTACCTCTTCATCTCCGCAGAGATGTATAATAACATGGGACC 118
|| ||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 60 GTTGAAGCTTTGAGCTCTCTACCTCTTTATCTCCG--GAGATGTATAATAACATGGGACC 117
Query 119 TCAACCGGGGATGCCAAGACCTCCAGGAAACCCTGAGCCTGGTCCGTTTGGAAATCCATT 178
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 118 TCAACCGGGGATGCCAAGACCTCCAGGAAACCCTGAGCCTGGTCCATTTGGTAATCCTTT 177
Query 179 CACTGGAGCTGGCTCGGGATTTATCCGTGGTGGTTTGGGAGCGTACGGGGAGAGAATTTT 238
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 178 CACTGGAGCTGGCTCGGGTTTTATCCGTGGTGGTTTGGGAGCGTATGGGGAGAGAATTTT 237
Query 239 AGGATCAAGCTCTGAGTATGTTCAGAGCAATATAAGCCGGTACTTCTCTGATCCGCAATA 298
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AGGATCGAGCTCTGAGTATGTTCAGAGCAATATAAGCCGGTACTTCTCTGATCCGCAATA 297
Query 299 CTATTTCCAAGTGAATGATCAATATGTGAGGAACAAACTGAAGGTTGTCCTGTTTCCTTT 358
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 298 CTATTTCCAAGTGAATGATCAATATGTGAGGAATAAACTGAAGGTTGTTCTGTTTCCTTT 357
Query 359 CCTACACCGGGGACATTGGACCAGAATATCTGAACCAGTTGGTGGTAGGCTCTCATACAA 418
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CCTACACCGGGGACACTGGACCAGAATATCTGAACCAGTTGGTGGTAGGCTCTCATACAA 417
Query 419 GCCTCCGATCTATGATATCAATGCTCCAGACTTGTACATTCCGTTTATGGCATTTGGTAC 478
|||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 418 GCCTCCAATATATGATATCAATGCTCCAGACTTGTACATTCCCTTTATGGCATTTGGTAC 477
Query 479 CTACGTTGTTCTTGCTGGCCTTTCATTGGGACTTAATGGAAAGTTTACGCCAGAAGCTTT 538
|||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 478 CTACGTTGTTCTTGCTGGTCTTTCATTGGGACTTAATGGAAAGTTTACACCGGAAGCTTT 537
Query 539 GAATTGGTTGTTTGTGAAAGGATTGGTTGGTTGGTTTTTGCAAGTGATGCTCCTGAAAGT 598
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 538 GAATTGGCTGTTTGTGAAAGGATTGGTTGGTTGGTTTTTGCAAGTAATGCTCCTGAAAGT 597
Query 599 AACACTTCTATCACTTGGTAGCGGAGAGGCGCCTTTACTAGACATTGTGGCATACGGAGG 658
||||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||
Sbjct 598 AACACTTCTATCACTTGGTAGTGGAGAGGCACCATTACTAGATATTGTGGCATACGGAGG 657
Query 659 CTACGCTTTTGCTGGTCTATGTCTTGCGGGTTTTGCCAAGATAATGTGGGGATACTCGTA 718
|| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 658 GTATGCTTTTGCTGGTCTGTGTCTTGCGGGCTTTGCCAAAATAATGTGGGGATACTCGTA 717
Query 719 CTACGCCTTGATGCCGTGGACTTGTCTATGCACTGGGATTTTCTTGGTGAAGACGATGAA 778
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CTACGCGTTGATGCCATGGACTTGTCTATGCACTGGGATTTTCTTGGTGAAGACGATGAA 777
Query 779 ACGCGTTCTGTTTGCTGAAGTAAGAAGTTATGATTCGAGCAAACATCACTACCTTCTGCT 838
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 778 ACGTGTTCTGTTTGCTGAAGTAAGAAGTTACGATTCGAGCAAACATCACTACCTTCTTCT 837
Query 839 GTTTTTAGCCTTGGTCCAGTTCCCTCTTTTGATATGGCTTGGGAACATTAGTGTTAATTG 898
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 838 GTTTTTAGCCTTGGTCCAGTTCCCACTTTTGATATGGCTTGGTAACATTAGTGTTAATTG 897
Query 899 GCTTCTTTGAAATGAAAAATACGTTTTTGTGAATTCTTATTGGTACTTGTAGCGTAATTT 958
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 898 GCTTCTTTGAAATGAAAAAGACGTTTTTGTGAATTCTTATTGGTATTTGTAGCGTAATTT 957
Query 959 GAACATTCTTGGTATTTGGCAATGTATGTTTGTTGTCTATTCTATTCATTTGCATGACGT 1018
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GAACGTTCTTGGCATTTGGCAATGTATGTTTGTTGTCTATTCTATTCATTTGCATGACGT 1017
Query 1019 GAAGAAAGAGTGATTTTGAA 1038
||||||| ||| ||||||||
Sbjct 1018 GAAGAAAAAGTTATTTTGAA 1037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50887190911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5