BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473334
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30910.1 | Symbols: | Molybdenum cofactor sulfurase family ... 1718 0.0
> AT1G30910.1 | Symbols: | Molybdenum cofactor sulfurase family
protein | chr1:11000883-11002936 FORWARD LENGTH=1121
Length=1121
Score = 1718 bits (930), Expect = 0.0
Identities = 1044/1098 (95%), Gaps = 11/1098 (1%)
Strand=Plus/Plus
Query 1 AAAAAGAAGAGATGGAGAATGCTTTGTCGCCGTCGCTGTCACCGTCGCCGGCAAGTGAAG 60
|||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||
Sbjct 19 AAAAAGAAGAGATGGAGAATACTTTGTCGCCGTTGTTGTCACCGTCGCCGGCAAGTGAAG 78
Query 61 TTGCTGCGAGAGTATCGTCTTTGTTCGTTTATCCGATCAAATCATGTAGAGGAATTTATT 120
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 79 TCGCTGCGAGAGTATCGTCTTTGTTCGTTTATCCGATCAAATCATGTCGAGGAATTTCTC 138
Query 121 TGTCTCAGGCAGCTCTCAGTCCCACCGGATTTCGATGGGATCGAAACTGGTTGATTGTGA 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 139 TGTCTCAGGCAGCTCTCACTCCCACCGGATTTCGATGGGATCGAAACTGGTTGATTGTGA 198
Query 181 ACTCTAAAGGACGAGGATTGACTCAAAGAGTGGAACCAAAGCTTGCCTTGATTGAAGTAG 240
| ||||||||| ||||||||||||| |||||||||||||||||| | |||||||||||||
Sbjct 199 ATTCTAAAGGAAGAGGATTGACTCAGAGAGTGGAACCAAAGCTTTCTTTGATTGAAGTAG 258
Query 241 AGATGCCTGAGCATGCGTTTGGAGAAGACTGGGAGCCCGAGAAGAGCTCTAACATGGTGG 300
| |||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 259 AAATGCCTAAGCATGCGTTTGGAGAGGACTGGGAGCCTGAGAAGAGCTCTAACATGGTGG 318
Query 301 TTAGAGCTCCTGGTATGGATGCCCTTAAGGTCTCCTTAGCTAAACCCGACAAAATAGCAG 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 319 TTAGAGCTCCTGGTATGGATGCCCTTAAGGTCTCCCTAGCTAAACCCGACAAAATAGCAG 378
Query 361 ACGGTGTCTCAGTTTGGGAGTGGTCTGGCTCCGCACTAGATGAAGGAGAAGAAGCATCTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 ACGGTGTCTCAGTTTGGGAGTGGTCTGGCTCCGCACTAGATGAAGGAGAAGAAGCATCTC 438
Query 421 AGTGGTTTACAAACTTTGTTGGGAAGCCTTGTCGACTTGTTCGTTTTGATTCAGCCTCTG 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 439 AGTGGTTTACAAACTTTGTTGGGAAGCCTTGTCGACTTGTTCGTTTTAATTCAGCCTATG 498
Query 481 AGACTAGGCCTGTGGATCCAAATTATGCTCCAGGTCACATTGCGATGTTCTCGGATATGT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 AGACTAGGCCTGTGGATCCAAATTATGCTCCAGGTCACATTGCGATGTTCTCGGATATGT 558
Query 541 ATCCATTCTTGCTTATATCACAGGGTTCGCTTGATTCCCTGAATAAGCTTCTCAAGGAGC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 ATCCATTCTTGCTTATATCACAGGGTTCGCTTGATTCCCTGAATAAGCTTCTCAAGGAGC 618
Query 601 CTGTACCGATCAACCGATTTAGACCCAACATCTTTGTTGATGGATGTGAACCATTTGCTG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 CTGTACCGATCAACCGATTTAGACCCAACATCTTTGTTGATGGATGTGAACCATTTGCTG 678
Query 661 AAGATTTATGGACAGAGATCCTTATAAACGGTTTCACCTTTCACGGTGTGAAACTATGCT 720
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 679 AAGACTTATGGACAGAGATCCTTATAAACGGTTTCACCTTTCACGGTGTGAAATTATGCT 738
Query 721 CCCGTTGCAAGGTACCGACGATTAATCAAGAAACTGGTATTGGAGGTCAAGAGCCGATTG 780
| || ||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 739 CTCGCTGCAAGGTACCTACGATTAGTCAAGAAACTGGTATTGGAGGTCAAGAGCCAATTG 798
Query 781 AGACTCTGAGGAATTTCAGGTCAGACAAAGTTTTACAGCCAAGGAGGAAACCACAGGGAA 840
||||| |||||| ||||||||||||||||||||||||||||| ||| |||||||| ||||
Sbjct 799 AGACTTTGAGGACTTTCAGGTCAGACAAAGTTTTACAGCCAAAGAGTAAACCACACGGAA 858
Query 841 AGATATACTTTGGGCAGAACATGGTTTGGAAAGACGGATTCGGCGATGGAATAGGAAAAA 900
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 859 AGATATACTTTGGGCAGAACATGGTTTGGAAAGACGGATTCGGCGATGGAATTGGAAAAA 918
Query 901 CAATTGAAATTGGTGATTCCGTTGTTGTCCTTGGAAAACTCTCCTCTCCTGCTAAAGCAG 960
|||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||
Sbjct 919 CAATTGAAATTGGTGATTCCGTTGTTGTCCTTCGAAAACTCTCATCTCCTGCTGAAGCAG 978
Query 961 CAACTTGAAAGAGACTTGCAGCTTGTTATAAATATATAATTGTGAATCTTTCATGAGAAC 1020
|||||||||||||||||||||||||||||| |||||||||||||||||| || |||||
Sbjct 979 CAACTTGAAAGAGACTTGCAGCTTGTTATA--TATATAATTGTGAATCTTCCACAAGAAC 1036
Query 1021 TGTGACCACTTTTATCAGA-CACC--A---C-A--TTTGACCCCCAAAAGAAGCAACCAC 1071
|||||||||||||| |||| |||| | | | |||||||||||| |||||||||||
Sbjct 1037 TGTGACCACTTTTACCAGAACACCCCAAATCCACGTTTGACCCCCAATTGAAGCAACCAC 1096
Query 1072 ATCAAATATATTCATTTT 1089
|||||||||||| |||||
Sbjct 1097 ATCAAATATATTGATTTT 1114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53363179335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5