BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473338
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65600.1 | Symbols: | Concanavalin A-like lectin protein ki... 1040 0.0
> AT5G65600.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr5:26216126-26218153 REVERSE LENGTH=2028
Length=2028
Score = 1040 bits (563), Expect = 0.0
Identities = 653/697 (94%), Gaps = 3/697 (0%)
Strand=Plus/Plus
Query 396 ATTCTCAAGCCATAGAGAGCTAGGTGAAGGAGGATTTGGAGCGGTTTATGAAGGAAATTT 455
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1047 ATTCTCAAGCCATAGAAAGCTAGGTGAAGGAGGATTTGGAGCAGTTTATGAAGGAAACTT 1106
Query 456 GAAAGAAATCAATACAATGGTTGCGGTGAAGAAATTATCCAGTGATTCAAGGCAGCGAAA 515
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 1107 GAAAGAAATCAATACAATGGTTGCGGTGAAGAAACTATCCGGTGATTCAAGGCAGGGAAA 1166
Query 516 GAAAGAGTTTTTAAATGAAGTTAAGGTCATCAGCAAACTGAGACATCGAAACATGGTGCA 575
||| ||||||||||| ||||||||| |||||||||||||||||||||||||| | |||||
Sbjct 1167 GAACGAGTTTTTAAACGAAGTTAAGATCATCAGCAAACTGAGACATCGAAACCTCGTGCA 1226
Query 576 ACTCATTGGTTGGTGTAATGaaaaaaaTGAGTTCTTGCTGATATATGAGTTAGTGCTAAA 635
||||| |||||||||||||| |||||||||||||||||||||||||||||||| | |||
Sbjct 1227 GCTCATCGGTTGGTGTAATGAGAAAAATGAGTTCTTGCTGATATATGAGTTAGTTCCAAA 1286
Query 636 TGGTAGCTTGAACTCCCACCTCTTTGGCAAAAGACCCCATTTACTTTCTTGGGACATAAG 695
||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1287 TGGTAGCTTGAACTCTCACCTCTTTGGGAAAAGACCCAATTTACTTTCTTGGGACATAAG 1346
Query 696 GTACAAGATAGCTCTTGGTTTAGCCTCTGCTCTGCTTTATCTTCATGAAGAATGGGATCA 755
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 GTACAAGATAGGTCTTGGTTTAGCCTCTGCTCTGCTTTATCTTCATGAAGAATGGGATCA 1406
Query 756 ATGTGTACTGCACAAAGACATCAAAGCAAGCAATATAATGCTTGACAGTGATTTCAATGT 815
|||||||||||||| ||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 1407 ATGTGTACTGCACAGAGACATCAAGGCAAGTAATATAATGCTTGACAGTGAATTCAATGT 1466
Query 816 AAAGTTAGGTGATTTCGGTTTGGCTCGGGTTATGAACCATGAACATGGTTCCCATACAAC 875
|||||||||||||||||| ||||||||| | ||||||||||||| |||||||||||||||
Sbjct 1467 AAAGTTAGGTGATTTCGGGTTGGCTCGGCTAATGAACCATGAACTTGGTTCCCATACAAC 1526
Query 876 AGGATTGGTTGGAACTTTTGGGTACATGGCACATGAATATGTAACGAAAGGAAGTGCGAG 935
|| |||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1527 GGGGTTGGCTGGAACTTTTGGGTACATGGCACCTGAATATGTAATGAAAGGAAGTGCGAG 1586
Query 936 TAAAGAGTCTGATATATATAGCTTTGGAATTGTTTTAATAGAGATTGTCACAGGGAGAAA 995
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1587 TAAAGAATCTGATATATATAGCTTTGGAATTGTTTTACTAGAGATTGTCACAGGGAGAAA 1646
Query 996 ATCGCTGGAACGAACGCAAGAAGATAACAGTGATTCAGAGAGT-A--ATGAGAAGAGTCT 1052
|||||||||||| || |||||||||||||||||| |||||||| | |||||||||||||
Sbjct 1647 ATCGCTGGAACGTACACAAGAAGATAACAGTGATACAGAGAGTGATGATGAGAAGAGTCT 1706
Query 1053 TGTGGAGAAAGTTTGGAAACTTTATGGAAAACAAGAA 1089
||||||||||||||| | ||||||||||||||||||
Sbjct 1707 AGTGGAGAAAGTTTGGGAGCTTTATGGAAAACAAGAA 1743
Score = 359 bits (194), Expect = 4e-98
Identities = 246/271 (91%), Gaps = 4/271 (1%)
Strand=Plus/Plus
Query 127 ATGTTCGGGTTTATAGCTGCTGCTGGAACAAACACAGAGGAATATAGACTTTTATCATGG 186
|||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||
Sbjct 742 ATGTTCGGGTTTATAGCTGCCGCTGGGACAAACACAGAGGAACATAGACTTTTATCATGG 801
Query 187 GAGCTCAGTTCAACTTTGGATATCGAGAAAGCCGATAGCAAGATAGGATTGGTAGTTGGC 246
||||||||||||| |||||| | ||| ||||||||||||| ||||||| | ||| |||||
Sbjct 802 GAGCTCAGTTCAAGTTTGGACAGCGACAAAGCCGATAGCAGGATAGGACTAGTAATTGGC 861
Query 247 ATTTCGGTTTCCGGGTTTGTTTTACTGATAGTTT-TGGTCCA-CACGATCGTGGTGGTTT 304
||||||| ||||||||||||||| |||| |||| ||||| | ||| | |||||||||||
Sbjct 862 ATTTCGGCTTCCGGGTTTGTTTTTCTGAC-GTTTATGGTC-ATCACAACCGTGGTGGTTT 919
Query 305 GGTCACGGAAGCAAAGAAAAAAGAAAGACAGAGATATAGCAAACATGATATCGATAAACG 364
||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||
Sbjct 920 GGTCACGGAAGCAAAGAAAGAAGAAAGAAAGAGATATAGAAAACATGATATCGATAAACA 979
Query 365 AAGATCTTGAAAGGGAAGCAGGACCAAGAAA 395
|||| ||||||||||||||||||||||||||
Sbjct 980 AAGACCTTGAAAGGGAAGCAGGACCAAGAAA 1010
Score = 84.2 bits (45), Expect = 3e-15
Identities = 53/56 (95%), Gaps = 3/56 (5%)
Strand=Plus/Plus
Query 69 GAATTTAAGTGTGACTTGGGCTTATGAGCT-A-A-CAACCTCTGATCCTAAGGAGA 121
|||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 633 GAATTTAAGTGTGACTTGGGCTTATGAGCTAACAGCAACCTCTGATCCTAAGGAGA 688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62248675800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5