BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473339
Length=774
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54590.1 | Symbols: | INVOLVED IN: RNA splicing; LOCATED IN... 1127 0.0
AT1G03140.1 | Symbols: | splicing factor Prp18 family protein ... 752 0.0
> AT1G54590.1 | Symbols: | INVOLVED IN: RNA splicing; LOCATED
IN: spliceosomal complex; CONTAINS InterPro DOMAIN/s: Prp18
(InterPro:IPR004098); BEST Arabidopsis thaliana protein match
is: splicing factor Prp18 family protein (TAIR:AT1G03140.1);
Has 388 Blast hits to 388 proteins in 196 species: Archae
- 0; Bacteria - 0; Metazoa - 136; Fungi - 132; Plants - 48;
Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink). |
chr1:20391560-20393503 REVERSE LENGTH=1132
Length=1132
Score = 1127 bits (610), Expect = 0.0
Identities = 722/776 (93%), Gaps = 7/776 (1%)
Strand=Plus/Plus
Query 1 ATGACTCAAGGAGAGACGAACGATTTCTTGTGTGACATCGCTGAGCTCAAGAAGCGGCAG 60
||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 362 ATGACTCAAGGAGAGACAAACGATTTCTTGCGTGACATCACTGAGCTCAAGAAGCGGGAG 421
Query 61 AAGAGTAGTGGTGTCATGAGTGATAGGAAGAGGAAGACGAGTGATGATGATGATGAACTC 120
| |||||||||| |||||| |||||||||||||||||||||| | |||||||||| |||
Sbjct 422 AGGAGTAGTGGTCTCATGAATGATAGGAAGAGGAAGACGAGT-A--ATGATGATGAGCTC 478
Query 121 AGTGGTGCTGATAAGGAGAATTTGAAGCGTTTGAAAGAAGCTGATTTCGAGGATTTATGC 180
| ||||||||| |||||| ||||||||| |||| |||||||| |||||||||||||||||
Sbjct 479 ATTGGTGCTGAGAAGGAGGATTTGAAGCTTTTGGAAGAAGCTAATTTCGAGGATTTATGC 538
Query 181 GACGAGGACAAGATTCTTGTGTTCTGCAAGAAGTTATTGCTTGAATGGAAGCAGGAACTT 240
|||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 539 GACGAGGACAAGATCCTTGTGTTCTGCAAGAAGCTGTTGCTTGAATGGAAGCAGGAACTT 598
Query 241 GATGCTATGGAAAACACTGAGAGGAGAACTGCTATAGGGAAACAGATGCTAGCCATTTTT 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 599 GAGGCTATGGAAAACACTGAGAGGAGAACTGCTATAGGGAAACAGATGCTAGCCACTTTT 658
Query 301 AACCAGTGTGCTAGGTATCTAACTCCTCTCTTCCACTTATGCCGGAACAAGGGTTTACCA 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 659 AACCAGTGTGCTAGGTATCTAACTCCTCTCTTCCACTTATGCCGGAACAAGTGTTTACCA 718
Query 361 GCTGACATTCGTCAAGCTTTAATGGTGATGGTTAACTGCTGCATAAAGCGAGACTACCTC 420
|||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 719 GCTGACATTCGTCAAGGTTTAATGGTGATGGTTAACTGCTGGATAAAGCGAGATTACCTC 778
Query 421 GATGCAATGGCTCAATTCATCAAACTAGCCATAGGGAATGCACCATGGCCCATCGGTGTG 480
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 779 GATGCAACGGCTCAATTCATCAAACTAGCCATAGGGAACGCACCATGGCCCATCGGTGTG 838
Query 481 ACTATGGTTGGTATTCACGAACGTTCTGCCCGAGAGAAGATTTCTACCAGCAGTAGTGTT 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 839 ACTATGGTTGGTATTCACGAACGTTCTGCCCGAGAGAAGATTTCTACTAGCAGTAGTGTT 898
Query 541 GCTCACATCATGAACGATGAAACCACTCGCAAGTATCTTCAGTCAGTTAAAAGACTGATG 600
|||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||
Sbjct 899 GCTCACATCATGAATAACGAAACCACTCGCAAGTATCTTCAGTCAGTTAAAAGATTGATG 958
Query 601 AC-TTTCTGTCAAAGACGCTATCCAACTATGCCTTCTAAAGCCGTTGAGTTCAATAGCTT 659
|| ||| |||||| |||| ||| || || ||||||||||| || ||||||||||||||||
Sbjct 959 ACATTT-TGTCAACGACGTTATTCAGCTTTGCCTTCTAAATCCATTGAGTTCAATAGCTT 1017
Query 660 AGCCAACGGAAGCGAATT-ACAGTCGTTGCTCGCTGGAGAGAGATTCTGTGGTGCTGATC 718
||||||||||||| |||| ||| ||||||||||||| ||||||||||| || ||||||||
Sbjct 1018 AGCCAACGGAAGC-AATTTACATTCGTTGCTCGCTGAAGAGAGATTCTTTGCTGCTGATC 1076
Query 719 GCCAACGAGTCTCCGAGGATAGACTCCGAATCATGCCTTCTCTCAACGAAATCTAG 774
|| |||||||||||||||| |||||| | ||||||||||||| ||||||||||||
Sbjct 1077 GCGAACGAGTCTCCGAGGAGAGACTCTGGCTCATGCCTTCTCTGAACGAAATCTAG 1132
> AT1G03140.1 | Symbols: | splicing factor Prp18 family protein
| chr1:754371-756303 REVERSE LENGTH=1443
Length=1443
Score = 752 bits (407), Expect = 0.0
Identities = 573/652 (88%), Gaps = 15/652 (2%)
Strand=Plus/Plus
Query 126 TGCTGATAAGGAGAATTTGAAGCGTTTGAAAGAAGCTGA-TTTCGAGGATTTATGCGACG 184
||||||||| || || |||| |||||| | ||||| | ||| |||||| ||||||| |
Sbjct 704 TGCTGATAA--AG-ATATGAAACGTTTG--A-AAGCTAACTTT-GAGGATCTATGCGATG 756
Query 185 AGGACAAGATTCTTGTGTTCTGCAAGAAGTTATTGCTTGAATGGAAGCAGGAACTTGATG 244
|||| ||||| |||||||| | |||||| | ||| |||||||||| ||||| |||||||
Sbjct 757 AGGATAAGATCCTTGTGTTTTATAAGAAGCTGTTGATTGAATGGAAACAGGAGCTTGATG 816
Query 245 CTATGGAAAACACTGAGAGGAGAACTGCTATAGGGAAACAGATGCTAGCCATTTTTAACC 304
| ||||| |||||||||||||||||||| | ||||||||||||| |||||| |||||| |
Sbjct 817 CGATGGAGAACACTGAGAGGAGAACTGCAAAAGGGAAACAGATGGTAGCCACTTTTAAGC 876
Query 305 AGTGTGCTAGGTATCTAACTCCTCTCTTCCACTTATGCCGGAACAAGGGTTTACCAGCTG 364
||||||||||||||||| |||||||||| |||||||| |||| ||||||||||||||||
Sbjct 877 AGTGTGCTAGGTATCTAGTTCCTCTCTTCAACTTATGCAGGAAGAAGGGTTTACCAGCTG 936
Query 365 ACATTCGTCAAGCTTTAATGGTGATGGTTAACTGCTGCATAAAGCGAGACTACCTCGATG 424
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 937 ACATTCGTCAAGCTTTAATGGTGATGGTTAACCACTGCATAAAGCGAGACTACCTTGCTG 996
Query 425 CAATGG-CTCAATTCATCAAACTAGCCATAGGGAATGCACCATGGCCCATCGGTGTGACT 483
|||||| | || | |||||||||||| || ||||| || |||||||| || || ||||||
Sbjct 997 CAATGGAC-CACTACATCAAACTAGCTATCGGGAACGCGCCATGGCCTATTGGAGTGACT 1055
Query 484 ATGGTTGGTATTCACGAACGTTCTGCCCGAGAGAAGATTTCTACCAGCAGTAGTGTTGCT 543
||||||||||||||||||||||| || |||||||||| || || || || |||||||||
Sbjct 1056 ATGGTTGGTATTCACGAACGTTCAGCTCGAGAGAAGA-TT-TA-CACCAACAGTGTTGCT 1112
Query 544 CACATCATGAACGATGAAACCACTCGCAAGTATCTTCAGTCAGTTAAAAGACTGATGACT 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 CACATCATGAACGATGAAACCACTCGCAAGTATCTTCAGTCAGTTAAAAGACTGATGACT 1172
Query 604 TTCTGTCAAAGACGCTATCCAACTATGCCTTCTAAAGCCGTTGAGTTCAATAGCTTAGCC 663
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 TTCTGTCAAAGACGTTATCCAACTATGCCTTCTAAAGCCGTTGAGTTCAATAGCTTAGCC 1232
Query 664 AACGGAAGCGAATTACAGTCGTTGCTCGCTGGAGAGAGATTCTGTGGTGCTGATCGCCAA 723
||||||||||| |||||||| ||||| || | ||||||||||| ||||| | |||| ||
Sbjct 1233 AACGGAAGCGACTTACAGTCTTTGCTAGCCGAAGAGAGATTCTTTGGTGGTAATCGTGAA 1292
Query 724 CGAG-TCTCCGAGGATAGACTCCGAATCATGCCTTCTCTCAACGAAATCTAG 774
| || |||| ||||| |||||||| |||||||||||| | ||||| ||||
Sbjct 1293 C-AGGTCTCAGAGGAGAGACTCCGGCTCATGCCTTCTCAGAGCGAAAGCTAG 1343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37625376103
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5