BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473339 Length=774 Score E Sequences producing significant alignments: (Bits) Value AT1G54590.1 | Symbols: | INVOLVED IN: RNA splicing; LOCATED IN... 1127 0.0 AT1G03140.1 | Symbols: | splicing factor Prp18 family protein ... 752 0.0 > AT1G54590.1 | Symbols: | INVOLVED IN: RNA splicing; LOCATED IN: spliceosomal complex; CONTAINS InterPro DOMAIN/s: Prp18 (InterPro:IPR004098); BEST Arabidopsis thaliana protein match is: splicing factor Prp18 family protein (TAIR:AT1G03140.1); Has 388 Blast hits to 388 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 136; Fungi - 132; Plants - 48; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink). | chr1:20391560-20393503 REVERSE LENGTH=1132 Length=1132 Score = 1127 bits (610), Expect = 0.0 Identities = 722/776 (93%), Gaps = 7/776 (1%) Strand=Plus/Plus Query 1 ATGACTCAAGGAGAGACGAACGATTTCTTGTGTGACATCGCTGAGCTCAAGAAGCGGCAG 60 ||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||| || Sbjct 362 ATGACTCAAGGAGAGACAAACGATTTCTTGCGTGACATCACTGAGCTCAAGAAGCGGGAG 421 Query 61 AAGAGTAGTGGTGTCATGAGTGATAGGAAGAGGAAGACGAGTGATGATGATGATGAACTC 120 | |||||||||| |||||| |||||||||||||||||||||| | |||||||||| ||| Sbjct 422 AGGAGTAGTGGTCTCATGAATGATAGGAAGAGGAAGACGAGT-A--ATGATGATGAGCTC 478 Query 121 AGTGGTGCTGATAAGGAGAATTTGAAGCGTTTGAAAGAAGCTGATTTCGAGGATTTATGC 180 | ||||||||| |||||| ||||||||| |||| |||||||| ||||||||||||||||| Sbjct 479 ATTGGTGCTGAGAAGGAGGATTTGAAGCTTTTGGAAGAAGCTAATTTCGAGGATTTATGC 538 Query 181 GACGAGGACAAGATTCTTGTGTTCTGCAAGAAGTTATTGCTTGAATGGAAGCAGGAACTT 240 |||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||| Sbjct 539 GACGAGGACAAGATCCTTGTGTTCTGCAAGAAGCTGTTGCTTGAATGGAAGCAGGAACTT 598 Query 241 GATGCTATGGAAAACACTGAGAGGAGAACTGCTATAGGGAAACAGATGCTAGCCATTTTT 300 || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 599 GAGGCTATGGAAAACACTGAGAGGAGAACTGCTATAGGGAAACAGATGCTAGCCACTTTT 658 Query 301 AACCAGTGTGCTAGGTATCTAACTCCTCTCTTCCACTTATGCCGGAACAAGGGTTTACCA 360 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 659 AACCAGTGTGCTAGGTATCTAACTCCTCTCTTCCACTTATGCCGGAACAAGTGTTTACCA 718 Query 361 GCTGACATTCGTCAAGCTTTAATGGTGATGGTTAACTGCTGCATAAAGCGAGACTACCTC 420 |||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||| Sbjct 719 GCTGACATTCGTCAAGGTTTAATGGTGATGGTTAACTGCTGGATAAAGCGAGATTACCTC 778 Query 421 GATGCAATGGCTCAATTCATCAAACTAGCCATAGGGAATGCACCATGGCCCATCGGTGTG 480 ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 779 GATGCAACGGCTCAATTCATCAAACTAGCCATAGGGAACGCACCATGGCCCATCGGTGTG 838 Query 481 ACTATGGTTGGTATTCACGAACGTTCTGCCCGAGAGAAGATTTCTACCAGCAGTAGTGTT 540 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 839 ACTATGGTTGGTATTCACGAACGTTCTGCCCGAGAGAAGATTTCTACTAGCAGTAGTGTT 898 Query 541 GCTCACATCATGAACGATGAAACCACTCGCAAGTATCTTCAGTCAGTTAAAAGACTGATG 600 |||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||| Sbjct 899 GCTCACATCATGAATAACGAAACCACTCGCAAGTATCTTCAGTCAGTTAAAAGATTGATG 958 Query 601 AC-TTTCTGTCAAAGACGCTATCCAACTATGCCTTCTAAAGCCGTTGAGTTCAATAGCTT 659 || ||| |||||| |||| ||| || || ||||||||||| || |||||||||||||||| Sbjct 959 ACATTT-TGTCAACGACGTTATTCAGCTTTGCCTTCTAAATCCATTGAGTTCAATAGCTT 1017 Query 660 AGCCAACGGAAGCGAATT-ACAGTCGTTGCTCGCTGGAGAGAGATTCTGTGGTGCTGATC 718 ||||||||||||| |||| ||| ||||||||||||| ||||||||||| || |||||||| Sbjct 1018 AGCCAACGGAAGC-AATTTACATTCGTTGCTCGCTGAAGAGAGATTCTTTGCTGCTGATC 1076 Query 719 GCCAACGAGTCTCCGAGGATAGACTCCGAATCATGCCTTCTCTCAACGAAATCTAG 774 || |||||||||||||||| |||||| | ||||||||||||| |||||||||||| Sbjct 1077 GCGAACGAGTCTCCGAGGAGAGACTCTGGCTCATGCCTTCTCTGAACGAAATCTAG 1132 > AT1G03140.1 | Symbols: | splicing factor Prp18 family protein | chr1:754371-756303 REVERSE LENGTH=1443 Length=1443 Score = 752 bits (407), Expect = 0.0 Identities = 573/652 (88%), Gaps = 15/652 (2%) Strand=Plus/Plus Query 126 TGCTGATAAGGAGAATTTGAAGCGTTTGAAAGAAGCTGA-TTTCGAGGATTTATGCGACG 184 ||||||||| || || |||| |||||| | ||||| | ||| |||||| ||||||| | Sbjct 704 TGCTGATAA--AG-ATATGAAACGTTTG--A-AAGCTAACTTT-GAGGATCTATGCGATG 756 Query 185 AGGACAAGATTCTTGTGTTCTGCAAGAAGTTATTGCTTGAATGGAAGCAGGAACTTGATG 244 |||| ||||| |||||||| | |||||| | ||| |||||||||| ||||| ||||||| Sbjct 757 AGGATAAGATCCTTGTGTTTTATAAGAAGCTGTTGATTGAATGGAAACAGGAGCTTGATG 816 Query 245 CTATGGAAAACACTGAGAGGAGAACTGCTATAGGGAAACAGATGCTAGCCATTTTTAACC 304 | ||||| |||||||||||||||||||| | ||||||||||||| |||||| |||||| | Sbjct 817 CGATGGAGAACACTGAGAGGAGAACTGCAAAAGGGAAACAGATGGTAGCCACTTTTAAGC 876 Query 305 AGTGTGCTAGGTATCTAACTCCTCTCTTCCACTTATGCCGGAACAAGGGTTTACCAGCTG 364 ||||||||||||||||| |||||||||| |||||||| |||| |||||||||||||||| Sbjct 877 AGTGTGCTAGGTATCTAGTTCCTCTCTTCAACTTATGCAGGAAGAAGGGTTTACCAGCTG 936 Query 365 ACATTCGTCAAGCTTTAATGGTGATGGTTAACTGCTGCATAAAGCGAGACTACCTCGATG 424 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| | || Sbjct 937 ACATTCGTCAAGCTTTAATGGTGATGGTTAACCACTGCATAAAGCGAGACTACCTTGCTG 996 Query 425 CAATGG-CTCAATTCATCAAACTAGCCATAGGGAATGCACCATGGCCCATCGGTGTGACT 483 |||||| | || | |||||||||||| || ||||| || |||||||| || || |||||| Sbjct 997 CAATGGAC-CACTACATCAAACTAGCTATCGGGAACGCGCCATGGCCTATTGGAGTGACT 1055 Query 484 ATGGTTGGTATTCACGAACGTTCTGCCCGAGAGAAGATTTCTACCAGCAGTAGTGTTGCT 543 ||||||||||||||||||||||| || |||||||||| || || || || ||||||||| Sbjct 1056 ATGGTTGGTATTCACGAACGTTCAGCTCGAGAGAAGA-TT-TA-CACCAACAGTGTTGCT 1112 Query 544 CACATCATGAACGATGAAACCACTCGCAAGTATCTTCAGTCAGTTAAAAGACTGATGACT 603 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1113 CACATCATGAACGATGAAACCACTCGCAAGTATCTTCAGTCAGTTAAAAGACTGATGACT 1172 Query 604 TTCTGTCAAAGACGCTATCCAACTATGCCTTCTAAAGCCGTTGAGTTCAATAGCTTAGCC 663 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1173 TTCTGTCAAAGACGTTATCCAACTATGCCTTCTAAAGCCGTTGAGTTCAATAGCTTAGCC 1232 Query 664 AACGGAAGCGAATTACAGTCGTTGCTCGCTGGAGAGAGATTCTGTGGTGCTGATCGCCAA 723 ||||||||||| |||||||| ||||| || | ||||||||||| ||||| | |||| || Sbjct 1233 AACGGAAGCGACTTACAGTCTTTGCTAGCCGAAGAGAGATTCTTTGGTGGTAATCGTGAA 1292 Query 724 CGAG-TCTCCGAGGATAGACTCCGAATCATGCCTTCTCTCAACGAAATCTAG 774 | || |||| ||||| |||||||| |||||||||||| | ||||| |||| Sbjct 1293 C-AGGTCTCAGAGGAGAGACTCCGGCTCATGCCTTCTCAGAGCGAAAGCTAG 1343 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37625376103 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5