BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473343
Length=1559
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30970.1 | Symbols: SUF4 | zinc finger (C2H2 type) family pr... 2364 0.0
> AT1G30970.1 | Symbols: SUF4 | zinc finger (C2H2 type) family
protein | chr1:11040281-11043751 REVERSE LENGTH=1594
Length=1594
Score = 2364 bits (1280), Expect = 0.0
Identities = 1500/1597 (94%), Gaps = 52/1597 (3%)
Strand=Plus/Plus
Query 1 GAATCTGAAGATCGTAGAAGAAATCGAAG-AAACGCTTTGTACCAATTAGAAACCCTAGC 59
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1 GAATCTGAAGATCGTAGAAGAAATCG-AGAAAACGCTTTGTACCAATTAGAAACCCTAGC 59
Query 60 GAGCGGAGGAAGGAGACAAAGAACGAGACTTTgagagacgagagagagaTTTCAA--TT- 116
|||||||||||||||||||||||||||||||| |||| || | |||||||||| ||
Sbjct 60 GAGCGGAGGAAGGAGACAAAGAACGAGACTTT-TGAGA-GATTG-GAGATTTCAATTTTG 116
Query 117 AG----AATCGTGAAATCAATACATAAGAGAAAGGTTTAGTGATGGGTAAGAAGAAGAAG 172
|| |||| ||||||||| | ||| ||||||| |||||||||||||||||||||||||
Sbjct 117 AGATCAAATCTTGAAATCAACAAATAGGAGAAAGATTTAGTGATGGGTAAGAAGAAGAAG 176
Query 173 AGAGCTTCAGAGAAGGTGTGGTGTTATTACTGCGACAGAGAGTTTGATGATGAGAAGATT 232
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 177 AGAGCTACAGAGAAGGTGTGGTGTTATTACTGCGATAGAGAGTTTGATGATGAGAAGATT 236
Query 233 CTTGTGCAGCATCAGAAAGCTAAGCACTTTAAGTGTCATGTCTGTCATAAGAAGCTTTCT 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CTTGTGCAGCATCAGAAAGCTAAGCACTTTAAGTGTCATGTCTGTCATAAGAAGCTTTCT 296
Query 293 ACAGCTAGTGGCATGGTGATTCATGTTCTTCAGGTTCATAAAGAGAATGTTACAAAGGTT 352
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 297 ACAGCTAGTGGCATGGTGATTCATGTTCTTCAGGTTCATAAAGAGAATGTTACAAAAGTT 356
Query 353 CCTAATGCTAAA-ACGGGTCGAGATTCAACTGATATTGAAATATATGGAATGCAAGGAAT 411
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CCTAATGCTAAAGACGG-TCGAGATTCAACTGATATTGAAATATATGGAATGCAAGGAAT 415
Query 412 TCCACCCGATGTCTTGGCTGCTCATTACGGAGAAGAAGAGGAAGAGCCTCCAGCCAAAGT 471
||||||| |||||||| |||||||||| |||||||||||||| |||||||||||||||||
Sbjct 416 TCCACCCCATGTCTTGACTGCTCATTATGGAGAAGAAGAGGATGAGCCTCCAGCCAAAGT 475
Query 472 TGCAAAAGTTGAGATTCCGTCCGCCCCTCTTGGTGGTGTAGTTCCTAGACCATATGGAAT 531
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 476 TGCAAAAGTTGAGATTCCTTCTGCCCCTCTTGGTGGTGTAGTTCCTAGACCATATGGAAT 535
Query 532 GGTATATCCGCCTCAACAAGTTCCTGGTGCTG--C----ACGACCAATGTATTATCCTGG 585
||||||||||||||||||||| |||||||||| | |||||||||||||||||| ||
Sbjct 536 GGTATATCCGCCTCAACAAGTACCTGGTGCTGTACCTGCACGACCAATGTATTATCCGGG 595
Query 586 TCCTCCTATGCGTCATCCTGCTCCTGTATGGCAAATGCCACCTCCTCGTCCACAACAATG 645
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 596 TCCTCCTATGCGTCATCCTGCTCCTGTATGGCAAATGCCACCTCCTCGTCCGCAACAATG 655
Query 646 GTATCCACAAAATCCAGCTCTTTCTGTACCTCCAGCTGCCCATTTAGGGTATCGACCACA 705
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GTATCCTCAAAATCCAGCTCTTTCTGTACCTCCAGCTGCCCATTTAGGGTATCGACCACA 715
Query 706 ACCACTTTTTCCTGTTCAAAATATGGGGATGACTC-AGC-C-AACCTCAGCTCCTGTCGT 762
||||||||||||||||||||||||||||||||||| | | | |||||||||||||| | |
Sbjct 716 ACCACTTTTTCCTGTTCAAAATATGGGGATGACTCCAACTCCAACCTCAGCTCCTGCCAT 775
Query 763 ACAACCTTCACCAGTCACTGGAGTAACTCCTCTTGGGATTCCTTCATCATCACCTGCAAT 822
|||||| ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||
Sbjct 776 ACAACCATCACCAGTCACTGGAGTAACTCCTCCTGGAATTCCTACATCATCACCTGCAAT 835
Query 823 GCCGGTTCCTCAACCTCTGTTCCCTGTTGTGAATAACAGCATTCCTTCTCAAGCTTCACC 882
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 836 GCCAGTTCCTCAACCTCTGTTCCCTGTTGTGAATAACAGCATTCCTTCTCAAGCTCCACC 895
Query 883 ATTTTCTGCTCCTCTGCCTGTTGGTGGGGCTCAGCAACCGTCTCATGCAGATGCTTTAGG 942
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 896 ATTTTCTGCTCCTCTGCCTGTTGGTGGGGCTCAGCAACCATCTCATGCAGATGCTTTAGG 955
Query 943 ATCAGCAAATGCTTATCCACCTAACAATTCTATTCCAGGTGGGACTAATGCTCATTCTTA 1002
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 956 ATCAGCAGATGCTTATCCGCCTAACAATTCTATTCCAGGTGGGACTAATGCTCATTCTTA 1015
Query 1003 TGCCTCTGGCCCAAACACTAGCGGTCCTTCAATTGGTCCACCTCCTGTAATTGCAAATAA 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1016 TGCCTCTGGCCCAAACACTAGCGGTCCTTCAATTGGTCCACCTCCTGTAATTGCAAACAA 1075
Query 1063 AGCTCCTAGCAATCAGCCTAATGAGGTCTATCTTGTATGGGATGATGAAGCGATGTCTAT 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 AGCTCCTAGCAATCAGCCTAATGAGGTCTATCTTGTATGGGATGATGAAGCGATGTCTAT 1135
Query 1123 GGAGGAAAGAAGAATGGCCTTACCGAAATACAAAGTGCACGATGAAACCAGCCAGATGAA 1182
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1136 GGAGGAAAGAAGAATGTCCTTACCAAAATACAAAGTGCACGATGAAACCAGCCAGATGAA 1195
Query 1183 CTCAATAAATGCAGCCATAGACAGACGAATCTCAGAGAGTAGGCTTGCTGGGCGAATGGC 1242
||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1196 CTCGATAAATGCAGCGATAGACAGACGAATCTCAGAGAGTAGGCTTGCTGGGCGGATGGC 1255
Query 1243 GTTTTAGAATTTGGCACCAAACCAAACCTGCGTCAAAGAAAAGGCGATATG-ATGGGGGG 1301
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||
Sbjct 1256 GTTTTAGAATTTGGCACCAAACCAAACCAGCGTCAAAGAAAAGGCGATATGGATGAAGG- 1314
Query 1302 CTTTGTTACAACAA---GTCTTCATTCACTTTTGTTCAGATTTTCAGATACTGAATTTAT 1358
|||||||||||||| ||||||| |||||||||||||||| | ||||||||||
Sbjct 1315 CTTTGTTACAACAACAAGTCTTCACTCACTTTTGTTCAGAT----A----CTGAATTTAT 1366
Query 1359 GATCTGATTTTAAGTTATTA-CTTTCCATCTGTTGTATTCTTTAGCCAGGTGAGTTAGTT 1417
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1367 GATCTGATTTTAAGTTATTAACTTTCCATCTGTTGTATTCTTTAGCCAGGTGAGTTAGTT 1426
Query 1418 T----TT---T-----AGGGATGTCAGAGATGTTTTTTCTCAGAAGTTTAGTCCtttttt 1465
| || | |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1427 TACCATTACATTGTTTAGGGATCTCAGAGATGTTTTTTCTCAGAAGTTTAGTCCTTTTTT 1486
Query 1466 ttt--G-TCGTTGGAGACTTGGAGGAAGAACTTTGTCTCCTTTTCTTCTGAATTGATCAA 1522
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1487 TTTTTGGTCGTTGGAGACTTGGAGGAAGAACTTTGTCTCCTTTTCTTCTGAATTGATCAA 1546
Query 1523 AGTATTATATTATACAGATTCACCCAAAATATTTGCA 1559
|||||||||||||||||||||||||||||| ||||||
Sbjct 1547 AGTATTATATTATACAGATTCACCCAAAATGTTTGCA 1583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76957435485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5