BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473344
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31010.1 | Symbols: OSB4 | organellar single-stranded DNA bi... 1664 0.0
> AT1G31010.1 | Symbols: OSB4 | organellar single-stranded DNA
binding protein 4 | chr1:11054731-11056921 REVERSE LENGTH=1326
Length=1326
Score = 1664 bits (901), Expect = 0.0
Identities = 1088/1175 (93%), Gaps = 25/1175 (2%)
Strand=Plus/Plus
Query 4 AAACCCCATAAACCCTAAAAACTTGAATCTTCTCCAAAATGCAGTTTCTTGCAAGATCAC 63
|||||| | ||| |||||| |||||||||| | ||||||||||||||| |||||||
Sbjct 13 AAACCCTA-AAAGGCTAAAAGTTTGAATCTTC-ACGAAATGCAGTTTCTTGGAAGATCAA 70
Query 64 TATCGAAATCCATAAGACCTTCGTTAAATTCAGCTTCTA-AACAATCATGGGTTC--T-T 119
| |||||||| ||||||||||||||||||||| || ||| || |||||||||||| | |
Sbjct 71 TTTCGAAATCGATAAGACCTTCGTTAAATTCAACTGCTAGAA-AATCATGGGTTCTTTCT 129
Query 120 TCTCACCAATATCTTTCAACTTTTTCTGCTGAAAGTAGTAGCCGTACTCGCGGAGGAGGA 179
||||| |||| ||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct 130 TCTCAGCAATTTCTTTCAACTTCTTCTACGGAAAGTAGTAGCCGTACTCGCGGAGGAGGA 189
Query 180 --A-G---CAGAGCTGAGAAATCGACGGAAGAGTGGCCGAGACCGACGGAGGTACCGTAC 233
| | |||||||||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 190 GGAGGAAACAGAGCTGAGAAATCGTCGGAGGAGTGGCCGAGACCGATGGAGGTACCGTAC 249
Query 234 CAACCCAAAATCGCGAATTCTATTGATTTGATTGGGTACGTTCACCAGCCAGTGCAGTTC 293
||||||||||||||||| ||||| ||||| ||||| ||||||||||| ||||| ||||||
Sbjct 250 CAACCCAAAATCGCGAACTCTATAGATTTAATTGGTTACGTTCACCAACCAGTTCAGTTC 309
Query 294 GACTCTACACTCGATGGAAAATTCTGGGCAGGCACAGTTATTTCTCATGAACCTTCTTCT 353
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 310 GACTCTACACTCGATGGAAAATTCTGGGCAGGCACAGTCATTTCTCATGAACCTTCTTCT 369
Query 354 GATTCCATA-TCTGAGTCTGATTCGTCTAGTAATTTCTGGATTCCGGTATTGTTTGAAGG 412
||||||| | |||||||||||||| |||||||| ||||||||||||||| ||||||||||
Sbjct 370 GATTCCA-AGTCTGAGTCTGATTCATCTAGTAACTTCTGGATTCCGGTACTGTTTGAAGG 428
Query 413 TGATTTAGCTCATACGGCTAACAGTTATTTGAAGAAAAACGATCGGGTTCATATTACCGG 472
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 429 GGATTTAGCTCATACGGCTAACTCTTATTTGAAGAAAAACGATCGGGTTCATATTACTGG 488
Query 473 ACAGATTTTAGGAGATGTGATTCAATCTGGAGCAAATTCTGACCAAGCATGTGTTCAGTT 532
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 489 ACAGATTTTAGGAGATGTGATTCAATCTGGAGCAAATTCTGACCAAGCACATGTTCAGTT 548
Query 533 GTTTAAAAGCTTTCATGGTAGCTTTTCACATCAAGTTATGGTTCGTGATCTCCACTACAT 592
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 549 GTTTAAAAGCTTTCATGGTAGCTTTTCACATCAAGTAATGGTTCGTGATCTCCACTACAT 608
Query 593 TGAAGGTTCTAAAGCCCTACCAAAAGTTATGCCAACGGTGAATCAAAATGAAGGTGTGCT 652
|||||||||||||||| | ||||| ||| |||||||| || |||||||||||||||||||
Sbjct 609 TGAAGGTTCTAAAGCCATGCCAAAGGTTTTGCCAACGTTGGATCAAAATGAAGGTGTGCT 668
Query 653 TAAGCATTCTGCTAGCGTTCAAAGAGGAAGAG-ATGTTGGAACTAATCTTTGGTTTGATC 711
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 669 AAAGCATTCTGCTAGCGTTCAAAGAGGAAGAGAAT-TTGGAACTAATCTTTGGTTTGATC 727
Query 712 TTGTTGATAAACCGGATGAATGGTGTGATTACCGTGAAA-GCAAACAGAACGGATCGGTT 770
|||||||||||||| |||||||||||||||||||||||| | |||||||| |||||||||
Sbjct 728 TTGTTGATAAACCGAATGAATGGTGTGATTACCGTGAAATG-AAACAGAATGGATCGGTT 786
Query 771 AATCCTAAACACCCTGATTTCAAGAAGAAAGACGGTAGTCAAGCTCTTTGGCTTAACAAA 830
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 787 AATCCTAAACACCCTGATTTCAAGAAGAAAGACGGGAGTCAAGCGCTTTGGCTTAACAAT 846
Query 831 GCTCCCACAGAGATATTGTCTGAGCTCGAAGACGTGAAGTTTGATATTCCAAAATACGCA 890
||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 847 GCTCCTACAGAGATATTGTCCGAGCTCAAAGACGTGAAGTTTGATATTCCAAAATACGCA 906
Query 891 CCAA-AACCAAAGGCCGGAGAGGAATCATGGAAGGACTTGGTGGAAAACATGAATAAGTG 949
|| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 907 -AAACAACCAAAGGCCGGAGAGGAATCATGGAAGGACTTGGTAGATAACATGAATAAGTG 965
Query 950 GTGGGACAATAGATTGGACAAGAG-ACACCCAAAATCGCCGGATTTTAAGCACAAAGAAA 1008
||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 966 GTGGGACAATAGAGTGGACAAGAGAAC-CCCAAAATCGCCGGATTTTAAGCACAAAGAAA 1024
Query 1009 CCGGTGTAGGTCTCTGGCTAAGTGACTCTCCGAGCTGGGTGTTAGAAAAACTGCCTCCCC 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 CCGGTGTAGGTCTCTGGCTAAGTGACTCTCCGAGCTGGGTGTTAGAAAAACTGCCTCCCC 1084
Query 1069 CAAAGAGCAAAACAAGTGACATCTACGGTGCACAAGAGATGTTCTGACCAATCTTCATGT 1128
|||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||
Sbjct 1085 CAAAGAGCAAAACAAGTGACATCTACGGTGTACAAGAGATGTTCTAACCAATGTTCATGT 1144
Query 1129 TGCGTTACTCTTAATTATTTT-TTGGCTTCTACGG 1162
|||||||||||||||| |||| || |||||||||
Sbjct 1145 TGCGTTACTCTTAATTTTTTTCTTA-CTTCTACGG 1178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57027819120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5