BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473345
Length=630
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31020.1 | Symbols: ATO2, TO2 | thioredoxin O2 | chr1:110571... 1027 0.0
AT2G35010.1 | Symbols: ATO1, TO1 | thioredoxin O1 | chr2:147542... 298 4e-80
> AT1G31020.1 | Symbols: ATO2, TO2 | thioredoxin O2 | chr1:11057105-11058867
FORWARD LENGTH=791
Length=791
Score = 1027 bits (556), Expect = 0.0
Identities = 608/633 (96%), Gaps = 4/633 (1%)
Strand=Plus/Plus
Query 1 GAAGCTTAGTGTGTTCATACGATGAAGAGTCAATGGTCTAATTTCCATCAGATTGGGAGA 60
||||||| ||||||| |||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 127 GAAGCTTGGTGTGTTTATACTATGAAGAGTCAATGGTCTAATTTTCATCAGATTGGGAGA 186
Query 61 AACTCTTTCTTAGCTGCTTCTACTGTCTACGTTTCAAGCGAATTCAACTTCGTAAACACA 120
|||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||
Sbjct 187 AACTCTTTCTTAGCTGCTTCTACTGTTTACGTTTCAAACGAATTCAACTTCTTAAACACT 246
Query 121 TCTCTTCTTAATCGAAGAAGCTTCTGTTTTGCAGAAGGAGATCGATCCAGCTTTGTAGTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 TCTCTTCTTAATCGAAGAAGCTTCTGTTTTGCAGAAGGAGATCGATCCAGCTTTGTAGTG 306
Query 181 TTGAAATCGGAGGCGGAGTTCAACAGTGCATTGAGTAAAGCTCGAGATGGATCTTTGCCA 240
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 TTGAAATCGGAAGCAGAGTTCAACAGTGCATTGAGTAAAGCTCGAGATGGATCTTTGCCA 366
Query 241 TCGGTTTTCTATTTCACTGCCGCCTGGTGTGGACCTTGCAGGCTTATCTCTCCTGTAATA 300
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 367 TCGGTTTTCTATTTCACTGCCGCATGGTGTGGACCTTGCAGGCTTATCTCTCCTGTGATA 426
Query 301 TTGGAGCTCAGTAATAAATATCCTGATGTAACAACGTATAAGGTCGACATTGACGAGGGC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 TTGGAGCTCAGTAATAAATATCCTGATGTAACAACGTATAAGGTCGACATTGACGAGGGC 486
Query 361 GGTCTTTCAAATGCTATTGGGAAGTTAAATGTCTCTGCTGTGCCAACATTGCAATTCTTC 420
||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 487 GGTCTATCAAATGCTATTGGGAAGTTAAATGTATCTGCTGTGCCAACACTGCAATTCTTC 546
Query 421 AAAGGTGGCGTGAAGAAAGCAGAGATTGTAGGCGTTGATGTGGTGAGGCTGAAGAGTGTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 AAAGGTGGCGTGAAGAAAGCAGAGATTGTAGGCGTTGATGTGGTGAGGCTGAAGAGTGTC 606
Query 481 ATGGAACAACTATACAAGTGAGAGAAACTCTCTGACTTCTGTACACTACATTGCTTTGAG 540
||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 607 ATGGAACAACTCTACAAGTGAGAGAGACTCT-TGACTTCTGTACACTACATTGCTTTGAG 665
Query 541 TTGTGATTATTTTGTGCGTTTGCTTT-AAGTTAGATTCTTTCATTCTCGTGTTCCTGCAA 599
|||||||||| |||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 666 TTGTGATTATCTTGTGCTTTTGCTTTTAAGTTAGATTCTTTGATTCTCGTGTTCCTGCAA 725
Query 600 -TTCATAAGGGTG-TAAGTTTGGTTTCTGTTAA 630
|||||||||||| |||||||||||||| ||||
Sbjct 726 ATTCATAAGGGTGCTAAGTTTGGTTTCTATTAA 758
> AT2G35010.1 | Symbols: ATO1, TO1 | thioredoxin O1 | chr2:14754271-14756129
FORWARD LENGTH=953
Length=953
Score = 298 bits (161), Expect = 4e-80
Identities = 272/326 (83%), Gaps = 5/326 (2%)
Strand=Plus/Plus
Query 182 TGAAATCGGAGGCGGAGTTCAACAGTGCATTGAGTAAAGCTCGAGATGGATCTTTGCCAT 241
||||||| |||| ||||||| || |||| |||| ||||||| |||||||||||| ||||
Sbjct 393 TGAAATCAGAGGAAGAGTTCATCAATGCAATGAGCAAAGCTCAAGATGGATCTTTACCAT 452
Query 242 CGGTTTTCTATTTCACTGCCGCCTGGTGTGGACCTTGCAGGCTTATCTCTCCTGTAATAT 301
|||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 453 CGGTCTTCTATTTCACTGCCGCCTGGTGTGGACCATGCAGGTTTATCTCTCCTGTAATCG 512
Query 302 TGGAGCTCAGTAATA-AATATCCTGATGTAACAACGTATAAGGTCGACATTGACGAGGGC 360
||||||| ||||| | ||||||| |||||||| |||||||| ||||||||||| ||||||
Sbjct 513 TGGAGCTTAGTAA-ACAATATCCCGATGTAACTACGTATAAAGTCGACATTGATGAGGGC 571
Query 361 GGTCTTTCAAATGCTATTGGGAAGTTAAATGTCTCTGCTGTGCCAACATTGCAATTCTTC 420
|| |||| || |||| | ||||| ||| || | |||||||||||| |||| ||||||
Sbjct 572 GGGATTTCGAACACTATCAGCAAGTTGAATATCACGGCTGTGCCAACACTGCATTTCTTC 631
Query 421 AAAGGTGGCGT-GAAGAAAGCAGAGATTGTAGGCGTTGATGTGGTGAGGCTGAAGAGTGT 479
||||| ||| | |||||||| ||| |||| || | ||||| || |||||||| | |
Sbjct 632 AAAGGAGGC-TCGAAGAAAGGGGAGGTTGTGGGTGCAGATGTCACGAAGCTGAAGAATCT 690
Query 480 CATGGAACAACTATACAAGTGAGAGA 505
||||||||| || ||||||||| |||
Sbjct 691 CATGGAACAGCTCTACAAGTGA-AGA 715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30391658935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5