BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473349
Length=1800
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31070.2 | Symbols: GlcNAc1pUT1 | N-acetylglucosamine-1-phos... 2863 0.0
AT2G35020.1 | Symbols: GlcNAc1pUT2 | N-acetylglucosamine-1-phos... 1450 0.0
> AT1G31070.2 | Symbols: GlcNAc1pUT1 | N-acetylglucosamine-1-phosphate
uridylyltransferase 1 | chr1:11084859-11088563 FORWARD
LENGTH=1812
Length=1812
Score = 2863 bits (1550), Expect = 0.0
Identities = 1728/1812 (95%), Gaps = 20/1812 (1%)
Strand=Plus/Plus
Query 1 CCAAACGTCACAAATCCAAAATC-CAAAATCGAATCGTTTTTAGCCTCC------gagag 53
||||||||||||||||||||| | ||||| ||||||||||||||||||| |||||
Sbjct 9 CCAAACGTCACAAATCCAAAA-CTCAAAACCGAATCGTTTTTAGCCTCCAAGAGAGAGAG 67
Query 54 agagagagagatctacagatagagaatgagagaaccgtcgatggagagagagaatggagC 113
|||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 68 AGAGAGAGAGATCTGCATATAGAGAATGATAGAACCGTCGATGGAGAGAGAGAATGGTGC 127
Query 114 TTTAACGGCGGCGACAACTACAACGACGGCGGTAACTTCTCCACCTCCGATGGCTTCTTC 173
|||||||||||||||||| || ||||||||||| |||||||| |||||||||||||||||
Sbjct 128 TTTAACGGCGGCGACAACAACGACGACGGCGGTGACTTCTCCTCCTCCGATGGCTTCTTC 187
Query 174 ACCGCGTCAAGCTTTAGTTGAGAGATTAAAAGATTATGGACAAGAAGACATTTTCTCTCT 233
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 188 ACCGCGTCAAGCTTTAGTTGAGAGATTGAAAGATTATGGACAAGAAGATATTTTCTCTCT 247
Query 234 TTGGGATGAACTTTCACCAGACGAGAAAGATTTTCTCGTTAGAGA-AGTTGAGAATTTGG 292
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 248 TTGGGATGAACTTTCACCAGACGAGAAAGATTTTCTCGTTAGAGATA-TTGAGAATTTGG 306
Query 293 ATCTTCCAAGAATAGATCGGATCATTAGATGTTCACTTCACTCTCAAGGTTTACCGGTGG 352
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 307 ATCTTCCAAGAATAGATCGGATCATTAGATGTTCACTTCACTCTCAAGGTTTACCGGTTG 366
Query 353 CGGCGATCGAACCGGTACCGGAGAATTGGGTTTCGACAGTAGATGGAAGAACAATGGAAG 412
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 367 CGGCGATTGAACCGGTACCGGAGAATTGGGTTTCGACAGTAGATGGTAGAACAATGGAAG 426
Query 413 ATAGAGAGAAATGGTGGAAAATGGGATTAAAAACTATCTATGAAGGCAAATTAGGTGTTG 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 ATAGAGAGAAATGGTGGAAAATGGGATTAAAAACTATCTATGAAGGCAAATTAGGTGTTG 486
Query 473 TGCTTTTATCTGGTGGACAGGGAACAAGGCTTGGAAGCTCAGATCCAAAAGGATGTTTCA 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 TGCTTTTATCTGGTGGACAGGGAACAAGGCTTGGAAGCTCAGATCCAAAAGGATGTTTCA 546
Query 533 ATATCGGACTGCCATCAGGGAAATCGCTCTTTCAGATTCAAGCAGAGAGAATCTTGTGTG 592
|||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 547 ATATCGGATTACCATCAGGGAAATCGCTCTTTCAGATTCAGGCAGAGAGAATCTTGTGTG 606
Query 593 TTCAAAGACTTGCTGCTCAAGTAGTGAGTGAAGGTCCAATTCGTCCAGTTACAATACACT 652
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 607 TTCAAAGACTTGCTGCTCAAGTAGTGAGTGAAGGTCCAATTCGTCCAGTTACAATACATT 666
Query 653 GGTATATTATGACTAGTCCATTTACTGATGAAGCGACACGAAAATATTTCTCGAGTCACA 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GGTATATTATGACTAGTCCATTTACTGATGAAGCGACACGAAAATATTTCTCGAGTCACA 726
Query 713 AGTACTTTGGTCTTGAACCAGATCAAATCAGTTTTTTCCAACAAGGTACATTGCCTTGCG 772
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 727 AGTACTTTGGTCTTGAACCAGATCAAATCAGTTTTTTCCAACAAGGTACTTTGCCCTGCG 786
Query 773 TTACAAAGGATGGAAAGTTTATCATGGAGACACCTTTCAGTCTTGCTAAAGCTCCAGATG 832
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 787 TTACAAAGGATGGAAAGTTTATTATGGAGACACCTTTCAGTCTAGCTAAAGCTCCAGATG 846
Query 833 GTAACGGCGGGGTCTATGCGGCGCTAAAGTGTTCAAGGCTATTAGAGGACATGGCTTCTA 892
|||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 847 GTAACGGCGGAGTCTATGCAGCGCTAAAGTGTTCAAGGCTATTAGAGGATATGGCTTCTA 906
Query 893 GAGGAATTAAATACGTCGATTGCTATGGCGTTGACAATGTCCTGGTTCGAGTAGCTGATC 952
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 GGGGGATTAAATACGTCGATTGCTATGGCGTTGACAATGTCCTGGTTCGAGTAGCTGATC 966
Query 953 CTACTTTTCTTGGATACTTTATCGATAAAGGCGCTGCTTCGGCTGCAAAAGTTGTGCGGA 1012
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 967 CTACTTTTCTTGGATACTTCATCGATAAAGGGGCTGCTTCGGCTGCAAAAGTTGTGCGGA 1026
Query 1013 AGGCATATCCTCAAGAACAGGTTGGAGTATTTGTTAGAAGAGGCAAAGGCGGACCGTTGA 1072
|||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||
Sbjct 1027 AGGCATATCCTCAAGAACAGGTAGGAGTGTTTGTTAGAAGAGGTAAAGGAGGACCGTTGA 1086
Query 1073 CAGTAGTTGAGTATAGTGAGCTTGATCAGTCTATGGCTTCTGCTATTAATCAAAGAACAG 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1087 CAGTAGTTGAGTATAGTGAGCTTGATCAGTCTATGGCTTCTGCTATTAATCAACGAACAG 1146
Query 1133 GACGTCTTCAATATTGCTGGAGTAACGTGTGCTTACACATGTTTACTTTAGATTTCCTTA 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 GACGTCTTCAATATTGCTGGAGTAACGTGTGCTTACACATGTTTACTTTAGATTTCCTTA 1206
Query 1193 ATCAAGTCGCAACCGGCCTAGAAAAAGACAGCGTCTACCATTTGGCGGAGAAGAAGATAC 1252
||||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1207 ATCAAGTAGCGACCGGCCTAGAAAAAGATAGCGTGTACCATTTGGCGGAGAAGAAGATAC 1266
Query 1253 CATCTATGAATGGATACACAATGGGACTGAAACTAGAACAATTCATTTTTGATTCGTTTC 1312
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1267 CATCTATGAATGGATACACAATGGGACTAAAACTAGAACAATTCATTTTTGATTCGTTTC 1326
Query 1313 CATATGCTCCTTCAACCGCACTCTTTGAGGTATTAAGGGAAGAGGAGTTTGCACCAGTGA 1372
| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1327 CTTATGCTCCTTCAACCGCACTTTTTGAGGTTTTAAGGGAAGAGGAGTTTGCACCAGTGA 1386
Query 1373 AGAACGTGAACGGGTCGAATTTCGATACACCGGAAAGTGCGAGGCTTTTGGTTCTAAGGC 1432
|||| || |||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1387 AGAATGTTAACGGGTCTAATTTTGATACACCGGAGAGTGCGAGGCTTTTGGTTCTAAGGT 1446
Query 1433 TACACACACGTTGGGTTATAGCAGCTGGTGGATTTCTAACACATTCTGTGCCTTTATATG 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 TACACACACGTTGGGTTATAGCAGCTGGTGGATTTCTAACACATTCTGTGCCTTTATATG 1506
Query 1493 CAACTGGTGTAGAGGTTTCACCTTTGTGCTCATACGCCGGAGAAAATCTTGAAGCTATTT 1552
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 CTACTGGTGTAGAGGTTTCACCTTTGTGCTCATACGCCGGAGAAAATCTTGAAGCTATTT 1566
Query 1553 GTCGAGGAAGAACGTTTCATGCACCTTGTGAAATATCCCTCTAATGgtttttttgtttct 1612
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 1567 GTCGAGGAAGAACGTTTCATGCACCTTGTGAAATTTCCCTCTAATGGTTTTTGTGTTTTT 1626
Query 1613 gttttggggtattaatatgttttcatcattttcatgtgctttgtctt-ttt-tttGCCCG 1670
||||||||||||||| || ||||||||||||| ||||||||||| || ||| ||| || |
Sbjct 1627 GTTTTGGGGTATTAAAATCTTTTCATCATTTTTATGTGCTTTGTTTTCTTTGTTT-CC-G 1684
Query 1671 GCTGTGGTTTATATATAAACTTATTTTCTTCCCGTGAAagagagaaagagagagagagTC 1730
| ||||||||||||||||||| ||| ||||||| ||| |||||||||||||||| ||
Sbjct 1685 GTTGTGGTTTATATATAAACTGATTATCTTCCCATGAGAGAGAGAAAGAGAGAG----TC 1740
Query 1731 AAAGAGGTCTTGGCGTTTTGTATCCAT-ATTGTAACATATCTAATAAAA-TTTTCTGTTG 1788
||||||||||||||||||| ||||||| | ||||||||||||||||||| |||| |||||
Sbjct 1741 AAAGAGGTCTTGGCGTTTTATATCCATTAATGTAACATATCTAATAAAAATTTTATGTTG 1800
Query 1789 GTTTTTGAATCT 1800
||||||||||||
Sbjct 1801 GTTTTTGAATCT 1812
> AT2G35020.1 | Symbols: GlcNAc1pUT2 | N-acetylglucosamine-1-phosphate
uridylyltransferase 2 | chr2:14756711-14760706 FORWARD
LENGTH=1830
Length=1830
Score = 1450 bits (785), Expect = 0.0
Identities = 1227/1441 (85%), Gaps = 27/1441 (2%)
Strand=Plus/Plus
Query 172 TCACCGCGTCAAGCTTTAGTTGAGAGATTAAAAGATTATGGACAAGAAGACATTTTCTCT 231
||||| | |||||| ||||| ||||| | || ||||||||||| ||||| ||||||||
Sbjct 174 TCACCTCATCAAGCGTTAGTCGAGAGGCTCAAGGATTATGGACAGGAAGATGTTTTCTCT 233
Query 232 CTTTGGGATGAACTTTCACCAGACGAGAAAGATTTTCTCGTTAGAGA-AGTTGAGAATTT 290
|| ||||||||||| ||||| || ||| |||| | ||| | ||||| | | ||||||||
Sbjct 234 CTCTGGGATGAACTCTCACCGGAAGAGCGAGATCTCCTCCTCAGAGATA-TCGAGAATTT 292
Query 291 GGATCTTCCAAGAATAGATCGGATCATTAGATGTTCACTTCACTCTCAAGGTTTACCGGT 350
|||||||||||| |||||||||||||| ||||| |||||||| || ||||| || || ||
Sbjct 293 GGATCTTCCAAGGATAGATCGGATCATCAGATGCTCACTTCATTCACAAGGGTTGCCAGT 352
Query 351 GGCGGCGATCGAACCGGTACCGGAGAATTGGGTTTCGACAGTAGATGG-AAGAAC-AATG 408
|||||| || |||||||| ||||||||||| || || || || || || |||||| || |
Sbjct 353 GGCGGCAATAGAACCGGTGCCGGAGAATTGTGTGTCAACGGTGGA-GGAAAGAACTAA-G 410
Query 409 GAAGATAGAGAGAAATGGTGGAAAATGGGATTAAAAACTATCTATGAAGGCAAATTAGGT 468
||||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||| |||
Sbjct 411 GAAGACAGAGAAAAATGGTGGAAAATGGGATTAAAAGCTATCTACGAAGGCAAATTGGGT 470
Query 469 GTTGTGCTTTTATCTGGTGGACAGGGAACAAGGCTTGGAAGCTCAGATCCAAAAGGATGT 528
|| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 471 GTGGTGCTTTTATCTGGTGGACAGGGAACAAGACTTGGAAGTTCAGATCCAAAAGGGTGT 530
Query 529 T-TCAATATCGGACTGCCATCAGGGAAATCGCTCTTTCAGATTCAAGCAGAGAGAATCTT 587
| | ||||||||||||||||| |||||||| || |||||||||||||| ||||| |||||
Sbjct 531 TAT-AATATCGGACTGCCATCTGGGAAATCACTTTTTCAGATTCAAGCTGAGAGGATCTT 589
Query 588 GTGTGTTCAAAGACTTGCTGCTCAAGTAGTGAGTGA---AGGTCCAATTCGTCCAGTTAC 644
||||| ||||| |||||| |||| | | ||||||| | |||||| ||| ||||||||
Sbjct 590 ATGTGTCCAAAGGCTTGCTTCTCAGGCAATGAGTGAGGCAAGTCCAACTCGCCCAGTTAC 649
Query 645 AATACACTGGTATATTATGACTAGTCCATTTACTGATGAAGCGACACGAAAATAT-TTCT 703
|||||| |||||||| ||||| |||||||||||| ||||| | |||| ||||| | |||
Sbjct 650 AATACAGTGGTATATAATGACCAGTCCATTTACTCATGAACCAACACAAAAAT-TCTTCA 708
Query 704 CGAGTCACAAGTACTTTGGTCTTGAACCAGATCAAATCA-GTTTTTTCCAACAAGGTACA 762
|||||||||||| ||||| ||||||||||||||| ||| |||||| |||||||| ||
Sbjct 709 AGAGTCACAAGTATTTTGGCCTTGAACCAGATCAAGTCACCTTTTTT-CAACAAGGAAC- 766
Query 763 T-TGCCTTGCGTTACAAAGGATGGAAAGTTTATCATGGAGACACCTTTCAGTCT-TGCTA 820
| |||||||| || |||||||||| |||||||||||||||||||||||||| || | | |
Sbjct 767 TCTGCCTTGCATTTCAAAGGATGGCAAGTTTATCATGGAGACACCTTTCAGCCTAT-CCA 825
Query 821 AAGCTCCAGATGGTAACGGCGGG-GTCTATGCGGCGCTAAAGTGTTCAAGGCTATTAGAG 879
| || || ||||| ||||| ||| || ||| | || |||| | ||||||| |||||||
Sbjct 826 AGGCGCCGGATGGGAACGG-GGGAGTTTATACAGCTTTAAAATCTTCAAGGTTATTAGAA 884
Query 880 GACATGGCTTCTAGAGGAATTAAATACGTCGATTGCTATGGCGTTGACAATGTCCTGGTT 939
|| |||||||| || || |||||||| || ||||||||||| ||||||||||| ||||||
Sbjct 885 GATATGGCTTCGAGGGGGATTAAATATGTGGATTGCTATGGTGTTGACAATGTTCTGGTT 944
Query 940 CGAGTAGCTGATCCTACTTTTCTTGGATACTTTATCGATAAAGGCGCTGCTTCGGCTGCA 999
||||||||||| ||||||||||| |||||||| ||||| ||| | || ||||| ||||||
Sbjct 945 CGAGTAGCTGACCCTACTTTTCTGGGATACTTCATCGACAAAAGTGCAGCTTCAGCTGCA 1004
Query 1000 AAAGTTGTGCGGAAGGCATATCCTCAAGAACAGGTTGGAGTATTTGTTAGAAGAGGCAAA 1059
||||| ||||| ||||||||||| || ||| | |||||||||||||| || || || |||
Sbjct 1005 AAAGTAGTGCGCAAGGCATATCCACAGGAAAAAGTTGGAGTATTTGTAAGGAGGGGAAAA 1064
Query 1060 GGCGGACCGTTGACAGTAGTTGAGTATAGTGAGCTTGATCAGTCTATGGCTTCTGCTATT 1119
|| || || ||||| ||||||||||| | |||||||| ||||||||||||||||| | |
Sbjct 1065 GGTGGGCCTTTGACTGTAGTTGAGTACACAGAGCTTGACCAGTCTATGGCTTCTGCAACT 1124
Query 1120 AATCAA-AGAACAGGACGTCTTCAATATTGCTGGAGTAACGTGTGCTTACACATGTTTAC 1178
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1125 AATCAACA-AACAGGACGTCTTCAATATTGCTGGAGTAACGTGTGCTTACACATGTTCAC 1183
Query 1179 TTTAGATTTCCTTAATCAAGTCGC-AACCGGCCTAGAAAAAGACAGCGTCTACCATTTGG 1237
| | ||||||||||| ||||| || || ||| | |||||||||||||| ||||||||||
Sbjct 1184 TCTGGATTTCCTTAACCAAGTTGCGAATGGGC-TGGAAAAAGACAGCGTTTACCATTTGG 1242
Query 1238 CGGAGAAGAAGATACCATCTATGAATGGATACACAATGGGACTGAAACTAGAACAATTCA 1297
|||||||||||||||| ||||| ||||| ||| | ||||||| ||||||||||| ||||
Sbjct 1243 CGGAGAAGAAGATACCGTCTATAAATGGCGACATAGTGGGACTAAAACTAGAACAGTTCA 1302
Query 1298 TTTTTGATT-CGTTTCCATATGCTCCTTCAACCGCACTCTTTGAGGTATTAAGGGAAGAG 1356
| || |||| | ||||| ||||||||||| || ||||| |||||||| || ||||| ||
Sbjct 1303 TATTCGATTGC-TTTCCTTATGCTCCTTCGACTGCACTTTTTGAGGTGTTGAGGGAGGAA 1361
Query 1357 GAGTTTGCACCAGTGAAGAACGTGAACGGGTCGAATTTCGATACACCGGAAAGTGCGAGG 1416
||||||||||| |||||||||| ||||||||||||| ||| ||||||||||| || ||
Sbjct 1362 GAGTTTGCACCGGTGAAGAACGCAAACGGGTCGAATTACGACACACCGGAAAGCGCAAGA 1421
Query 1417 CTTTTGGTTCTAAGGCTACACACACGTTGGGTTATAGCAGCTGGTGGATTTCTAACACAT 1476
|| ||||||||| | || || ||||||||||| |||||||||||||||||||||||||||
Sbjct 1422 CTGTTGGTTCTACGACTGCATACACGTTGGGTCATAGCAGCTGGTGGATTTCTAACACAT 1481
Query 1477 TCTGTGCCTTTATATGCAACTGGTGTAGAGGTTTCACCTTTGTGCTCATACGCCGGAGAA 1536
|| || ||||||||||| |||||||| || || ||||| |||||||| ||||| ||||||
Sbjct 1482 TCCGTTCCTTTATATGCGACTGGTGTGGAAGTGTCACCATTGTGCTCGTACGCTGGAGAA 1541
Query 1537 AATCTTGAAGCTATTTGTCGAGGAAGAACGTTTCATGCACCTTGTGAAATATCCCTCTAA 1596
||||| ||||| |||||||| |||||||| ||||| ||||| |||||||| |||||||||
Sbjct 1542 AATCTAGAAGCGATTTGTCGGGGAAGAACCTTTCACGCACCATGTGAAATCTCCCTCTAA 1601
Query 1597 T 1597
|
Sbjct 1602 T 1602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89055766830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5