BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473354
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45410.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1823 0.0
> AT5G45410.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G25030.2);
Has 124 Blast hits to 124 proteins in 34 species: Archae -
2; Bacteria - 31; Metazoa - 0; Fungi - 0; Plants - 91; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:18401908-18403800
REVERSE LENGTH=1272
Length=1272
Score = 1823 bits (987), Expect = 0.0
Identities = 1126/1192 (94%), Gaps = 13/1192 (1%)
Strand=Plus/Plus
Query 71 TGTCCCTTTGTTGCTGAAAGCATAATCCAGAAATGCCCTTTCCTGAGAAACATCAACAAG 130
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 93 TGTCCCTTTGCTGCCGAAAGCATAATCCAGAAATGCCCTTTCCTGAGAAACATCAACAAG 152
Query 131 CCTACCAATTTGTCCTTCTCCTCCTTGAGTCTTCCAATTCCGGTGCAAGGAGGTAAAGGT 190
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 153 CCTACCAATTTGTCCTTCTCCTCCTTGAGTTTTCCAATTCCGGTGCAAGGAGGTAAAGGT 212
Query 191 CCGATTTTTGAAGATGGTCCTGGATTTGATTCAGCATTCAAGCTTTTCCATGGAAAAGAT 250
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 213 CCTATTTTTGAAGATGGTCCTGGATTTGATTCAGCATTCAAGCTCTTCCATGGGAAAGAT 272
Query 251 GGTATTGTGCCGCTTTCTGGACATTCTAGTTTCCGAGATGATTTTGAAGATGAGGTGGCT 310
|||||||||||||||||||| || | | | ||||||| ||||||||||| || |
Sbjct 273 GGTATTGTGCCGCTTTCTGG---TT-TCG----C-TGATGATTCTGAAGATGAGGCGGGT 323
Query 311 CGTCGTGCTCCTCTGCAATTCAATCCACTTGCGGGGAAGGTAGCTACTATAAGCCTATCA 370
||||||| |||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 324 CGTCGTG---CTCTGCAATTCAATCCACTTGCTGGTAAGGTAGCTACAATAAGCCTATCA 380
Query 371 GCTTTTGGTCCTGGAGGGCCTTTTGGCTTTGGTCCTTTCTCTGAGAAATGGAAGAAACAA 430
||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 381 GCTTTTGGTCCTGGAGGCCCTTTTGGTTTTGGTCCTTTCTCAGAGAAATGGAAGAAACAA 440
Query 431 CAGAAGAAACCTAAACCTTCCAAAAACCAACAGTCTGGGGACTCTTCGAAACATGAGGCA 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 CAGAAGAAACCTAAACCTTCCAAAAACCAACAGTCTGGGGACTCTTCGAAACATGAGGCA 500
Query 491 GTTGGAGACGAATGGTTAAAAACCGGGAATTGTCCTATCGCCAAGTCTTTTAGAGCTGCA 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 GTTGGAGACGAATGGTTAAAAACCGGGAATTGTCCTATCGCCAAGTCTTTTAGAGCTGCA 560
Query 551 AGCAAAGTCATGCCTCTTGTTTCTAAAGCATTAACGCTACCATCTGGTATGAAATATAGA 610
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 561 AGCAAAGTCATGCCTCTTATTTCTAAAGCATTAACGCTACCACCTGGTATGAAATATAGA 620
Query 611 TGTCCAGCTCCTATAGTAGCTGCAAGAGCTGCACTTTCAAAGACTGCTTTGGTTAAAAGT 670
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 621 TGTCCAGCTCCTATAGTAGCTGCTAGAGCTGCACTTTCGAAGACTGCTTTGGTCAAAAGT 680
Query 671 CTTCGCCCTCAGCCTTTACCTGAAAAGATGCTTGCAATCGCTCTCATGGGAATGGCTGCA 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 CTTCGCCCTCAGCCTTTACCTGAAAAGATGCTTGCAATCGCTCTCATGGGAATGGCTGCA 740
Query 731 AATGTGCCTCTTGGTGTATGGAGAGAACACACCAAGAAGTTTTCGCCTTCATGGTTTGTG 790
||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct 741 AATGTGCCTCTAGGTGTATGGAGAGAACACACAAAGAAGTTTTCGCCTGCATGGTTTTTG 800
Query 791 GCGGTCCATGCTGCTGTGCCTTTTATAGCAATGCTTAGGAAATCTGTACTGATGCCGAAA 850
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 801 GCTGTCCATGCTGCTGTGCCTTTTATAGCAATGCTTAGGAAATCTGTTCTGATGCCCAAA 860
Query 851 ACAGCCATGGCTTTGACCATTGGAGCTTCGATTTTAGGACAGGTGATTGGGTCAAGAGCT 910
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 861 ACAGCCATGGCTTTGACCATTGGAGCTTCGATCTTGGGACAGGTGATTGGGTCAAGAGCT 920
Query 911 GAGCGTTACCGTCTCAGAGCAGTGGCTGAGAAAATGGTTACTGAAACCGCTATGGTTTCT 970
|||||||||||||||| |||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct 921 GAGCGTTACCGTCTCAAAGCAGTAGCTGAGAAAATGGTTCCTGTAACCGCTATGGTTTCT 980
Query 971 GAATACAACCAGAGCCCTGGCGACTCAGGCATTTCTGGGGGACATTGTGGTACAGGAGAG 1030
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 981 GGATACAACCAGAGCCCTGGCGACTCAGGCATTTCTGGGGGACATTGTGGTATAGGGGAG 1040
Query 1031 GGAGTGAAGGAGGTTTATTTCAATGTAAATGTTGGAGAATCTGCTAAATCAACTGGACTC 1090
||||||||| ||||||||| |||||||||| ||||||| |||||||||||||||||||||
Sbjct 1041 GGAGTGAAGCAGGTTTATTACAATGTAAATATTGGAGAGTCTGCTAAATCAACTGGACTC 1100
Query 1091 TGTTATTGAGAGAAAGTTCTTATTGATTCCAAAAACTACAAATTACTATGTAAGGATTGG 1150
|||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1101 TGTTATTGAGAGAATGTTCTTATTGATTTCAGAAACTACAAATTACTATGTAAGGATTGG 1160
Query 1151 ATGTTTGTGTGAGAGGGAAGGTTTCTGTAATTCAGTGAATTGTGTAAACCAAAACAGTGG 1210
|| |||||||| |||||||||||| |||||||||||||||||||||||||| |||| |||
Sbjct 1161 ATATTTGTGTGTGAGGGAAGGTTTTTGTAATTCAGTGAATTGTGTAAACCATAACAATGG 1220
Query 1211 TGTCGTTTTATCCCTTTTAA-TGGGTCTAAATAAAAGTTTAATAATTCCCTC 1261
|||||||||||||||| || |||||||||||||||| ||||||||||||||
Sbjct 1221 TGTCGTTTTATCCCTTCAAAATGGGTCTAAATAAAAGGTTAATAATTCCCTC 1272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61997673075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5