BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473357
Length=687
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31720.1 | Symbols: | Protein of unknown function (DUF1218)... 758 0.0
> AT1G31720.1 | Symbols: | Protein of unknown function (DUF1218)
| chr1:11356102-11357081 FORWARD LENGTH=773
Length=773
Score = 758 bits (410), Expect = 0.0
Identities = 594/677 (88%), Gaps = 36/677 (5%)
Strand=Plus/Plus
Query 1 CTCTGTAATTGTGGAGTAGGTCTCAAGTAATCTCGTCTTCCCTCTTAGGGGATTTAAGAA 60
||||||||| ||||||||||||||||| ||||||||||||||||| | ||||||||||||
Sbjct 1 CTCTGTAATCGTGGAGTAGGTCTCAAGCAATCTCGTCTTCCCTCTAAAGGGATTTAAGAA 60
Query 61 AAAATCAATGGAAGTTCAAGAACAATATAACCGGAATGGGCTACCCAAAT-TTTCTATCT 119
|||||||||||| ||||| ||||| |||||||| |||||| |||||||| ||| | |||
Sbjct 61 CAAATCAATGGAAATTCAAAAACAAGATAACCGGGATGGGCGACCCAAATCTTT-TCTCT 119
Query 120 TTTTCATGTTCATATTTCTCTTTGGTCTCGTC-GCATTCTTCC--TG----T--GCC--- 167
||||||||||||| |||||||||||||||| | || ||||||| || | |||
Sbjct 120 TTTTCATGTTCATCTTTCTCTTTGGTCTCG-CGGCGTTCTTCCTATGCCTTTCGGCCGAG 178
Query 168 TTTC----GGCCGA-G-TTT-C-AA-A----AGG----C-T-AAGGGGAAAGATCTGAAA 208
|||| ||| | | ||| | || | ||| | | ||||||||||||||||||
Sbjct 179 TTTCAAAAGGCTAAGGCTTTGCTAAGAGCTCAGGTTTTCTTAAAGGGGAAAGATCTGAAA 238
Query 209 TGGGATGGAGAATCGTGTTATTTACCCGAGAATCATGCTTTCGGGTTAGGAATTGCTGCT 268
|||||||||||||||||||||||||| || |||| |||||||||| ||||||||||||||
Sbjct 239 TGGGATGGAGAATCGTGTTATTTACCAGAAAATCGTGCTTTCGGGCTAGGAATTGCTGCT 298
Query 269 TTGGCCTGTGTTTCTGTTGCTCAGATCGTCGGAAACGTTGTGATCTGTAGAGGTTTCTTG 328
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 299 TTGGTCTGTGTTTCCGTTGCTCAGATCGTCGGAAACGTTGTGATCTGTAGAGGTTTCACG 358
Query 329 AAAACGAACAAAACCGGAACGAC-ACTGTTATGTATAATTCTTCTGTTGTTTTCTTGGGT 387
|||||| |||||||| ||||||| | | || |||||||||||||||||||||||||||||
Sbjct 359 AAAACGGACAAAACCAGAACGACTA-TATTTTGTATAATTCTTCTGTTGTTTTCTTGGGT 417
Query 388 TAATTTTGCGGTTGCGGTTATATTGATAAGTGTTGGTGCAAGCATGAACAGAGAGCAGAG 447
||||||||| |||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 418 TAATTTTGCCGTTGCGGTTACGTTGATAAGCGTTGGTGCAAGCATGAATAGAGAGCAGAT 477
Query 448 ATACGGCAAAGGGTGGCTAAACCGTGAGTGTTACCTTGTGAAAGACGGAGTGTTCTCAGC 507
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 478 ATACGGCAAAGGGTGGCTAAACCGTGAGTGTTACCTTGTGAAAGACGGTGTGTTCGCAGC 537
Query 508 GTCTGGCGTTCTGTGCGTTACAACGCTGGCCGCTATTCTTGGAGCGTTTGCTTTTAGAGT 567
||||||| |||| | |||||| ||| ||||||||||||| ||||||||||| |||| |||
Sbjct 538 GTCTGGCTTTCTCTCCGTTACGACGATGGCCGCTATTCTCGGAGCGTTTGCGTTTAAAGT 597
Query 568 AAAACCATCATTACAGGTCGACACTCATGACAAACGTCACACCCAAAATGTGTAGTAGTT 627
|||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||
Sbjct 598 CAAACCATCATTACAGGTCGAGAATCATGACAAACGTCACACTCAAAATGTGTAGTAGTT 657
Query 628 TGAAAATTAAGTAGAAA 644
|||||||||||||||||
Sbjct 658 TGAAAATTAAGTAGAAA 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33255005314
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5