BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473360
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31750.1 | Symbols: | proline-rich family protein | chr1:11... 905 0.0
AT2G04063.1 | Symbols: | glycine-rich protein | chr2:1349758-1... 372 2e-102
> AT1G31750.1 | Symbols: | proline-rich family protein | chr1:11370659-11372077
REVERSE LENGTH=727
Length=727
Score = 905 bits (490), Expect = 0.0
Identities = 567/604 (94%), Gaps = 6/604 (1%)
Strand=Plus/Plus
Query 1 TATCTCTCAAGTTCTTGATTTTAATTAAAGATGGGTGGAGACGAGCC-CCGCGAACAAGA 59
|||||||||||||||||||||||||||||||||||| |||||| || || |||||||||
Sbjct 17 TATCTCTCAAGTTCTTGATTTTAATTAAAGATGGGTAAAGACGA-CCACCACGAACAAGA 75
Query 60 CAAAGGATTCTTCTCACATCATAATCATCACGGCTATGGGTATCCGCCAGGAGCTTATCC 119
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 76 CAAAAGATTCTTCTCACATCATAATCATCACGGCCATGGGTATCCGCCAGGAGCTTATCC 135
Query 120 TCCTCCA-C-C-GGGAGCTTATCCTCCGCCAGGAGGTTATCCTCCGCAAGCTTATCCTCC 176
||||||| | | ||||||||||||||| || |||||||| |||||||||| |||||||||
Sbjct 136 TCCTCCACCGCAGGGAGCTTATCCTCCACCGGGAGGTTACCCTCCGCAAGGTTATCCTCC 195
Query 177 GCCACCTCACGGCTATCCACCCGCCGCTTATCCACCTCCTCCCGGTGCTTATCCTCCCGC 236
|||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 196 ACCACCTCACGGCTATCCACCGGCCGCTTACCCACCTCCACCCGGTGCTTATCCTCCCGC 255
Query 237 CGGGTATCCCGGACCCTCTGGTTCTCGTCCAGGGCTTGGAGGAGGAGTTGGGGGATTGAT 296
||||||||||||||| || ||| ||||||||||| |||||||||||||||||||||||||
Sbjct 256 CGGGTATCCCGGACCATCCGGTCCTCGTCCAGGGTTTGGAGGAGGAGTTGGGGGATTGAT 315
Query 297 AGCAGGAGCGGCAACAGCGGCAGCGGCTGCAATGGGAGGTCACCATGCGGGTCATCACGG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 AGCAGGAGCGGCAACAGCGGCAGCGGCTGCAATGGGAGGTCACCATGCGGGTCATCACGG 375
Query 357 AGGCTACGGGCACCACGGCCACGGAAAATATAAAAGTGGGTTTTTTGGAGGAGGAAAGTA 416
|||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 376 AGGCTACGGGCACCACGGCCACGGAAAATACAAAAGAGGGTTTTTCGGAGGAGGAAAGTA 435
Query 417 CAAGCGAGGAAAGCATAGTATGTTTGGAGGAGGGAAGTATAAGCGTGGCAAGCACGGCAT 476
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 436 CAAGCGAGGAAAGCATAGTATGTTTGGTGGAGGGAAGTACAAGCGTGGCAAGCACGGTAT 495
Query 477 GTTCGGAGGCAAACGAGGCAAGCATGGCAAGTTTGGAGGGAAACGAGGCAAGGGCATGTT 536
||||||||||||| || |||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 496 GTTCGGAGGCAAAAGAAGCAAGCATGGCATGTTCGGAGGGAAACGAGGCAAAGGCATGTT 555
Query 537 CGGACGAAGGAAGTGGAAATGATCCATTAGCATTCCTCTCTATATATATTATCGTAACAA 596
|||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 556 CGGACGAAAGAAGTGGAAATGATCCATTAGCAT-CCTCTCTACATATATTATCGTAACAA 614
Query 597 CTTA 600
|||
Sbjct 615 TTTA 618
> AT2G04063.1 | Symbols: | glycine-rich protein | chr2:1349758-1350177
REVERSE LENGTH=339
Length=339
Score = 372 bits (201), Expect = 2e-102
Identities = 265/296 (90%), Gaps = 3/296 (1%)
Strand=Plus/Plus
Query 263 GTCCAGGGCTTGGAGGAGGAGTTGGGGGATTGATAGCAGGAGCGGCAACAGCGGCAGCGG 322
||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 47 GTCTAGGGCTTGGAGGAGGAGTTGGGGGATTGATAGCAGGAGCGGCAACAGCGGTAGTGG 106
Query 323 CTGCAATGGGAGGTCACCATGCGGGTCATCACGGAGGCTACGGGCACCACGGCCACGGAA 382
|||||||||| |||||||||| |||||||| || |||||||| ||||||| ||| ||||
Sbjct 107 CTGCAATGGGTGGTCACCATGTGGGTCATCGCGCAGGCTACGAGCACCACAACCATGGAA 166
Query 383 AATATAAAAGTGGGTTTTTTGGAGGAGGAAAGTACAAGCGAGGAAAGCATAGTATGTTTG 442
|||| | ||| || || ||||||||||||||||||||||||||||||| ||||| |
Sbjct 167 AATACATAAGAGGATTACTTGGAGGAGGAAAGTACAAGCGAGGAAAGCAAAGTATC---G 223
Query 443 GAGGAGGGAAGTATAAGCGTGGCAAGCACGGCATGTTCGGAGGCAAACGAGGCAAGCATG 502
|||||||||| || ||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 224 GAGGAGGGAATTACAAGTGTGGCAAGCACGGCATGTTCGGAGGCAAAAGAGGCAAGCATG 283
Query 503 GCAAGTTTGGAGGGAAACGAGGCAAGGGCATGTTCGGACGAAGGAAGTGGAAATGA 558
|| ||| || |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 284 ACATGTTCGGGGGGAAACGAGGCAAGGGCATGTTCGGACAAAGGAAGTGGAAATGA 339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28884634525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5