BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473362
Length=580
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31760.1 | Symbols: | SWIB/MDM2 domain superfamily protein ... 843 0.0
> AT1G31760.1 | Symbols: | SWIB/MDM2 domain superfamily protein
| chr1:11372425-11373483 REVERSE LENGTH=585
Length=585
Score = 843 bits (456), Expect = 0.0
Identities = 542/582 (93%), Gaps = 12/582 (2%)
Strand=Plus/Plus
Query 1 ATTTGTCTGTTTTTAGGGTTTTAGCTT-TGTCTTTAGTCGTTGTTTGTTTCTCTTATCGG 59
||||| ||||| ||||||||||||||| | ||| ||||||||||||||||||||| ||||
Sbjct 2 ATTTGACTGTTGTTAGGGTTTTAGCTTCT-TCTCTAGTCGTTGTTTGTTTCTCTTTTCGG 60
Query 60 aaaaaaaaaaTGGCGGCAATTTCTAGGGTTTTTGGAGGGTTCAGGACACTGATGTCGAAG 119
||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 AAATAAAAAATGGCGGGAATTTCTAGGGTTTTGGGAGGGTTCAGGACACTGATGTCGAAG 120
Query 120 GCGGCGAGTGTTGAGGCCGTTACCGTAGCTGGAGAAGGAAAAGGAATATTCAAGACTCTT 179
||||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||| |
Sbjct 121 GCGGCGACTGTTGAGGCCGTTACTGTAGCCGGAGAAGGAAAAGGGATATTCAAGACTCGT 180
Query 180 CCGGTGTCACAGCAGCTGGCTAGCTTCGCCGGAGAAAGCGAACTCACTCGTGGTTCCGCC 239
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 CCGGTGTCACAGCAGCTAGCTAGCTTCGCCGGAGAAAGGGAACTCACTCGTGGTTCCGCT 240
Query 240 CTGAAGAAAGTTTGGGAGTATGTGAAGCTTCACAATCTCCAGAATCCGGCGAACAAGAAG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTGAAGAAAGTTTGGGAGTATGTGAAGCTTCACAATCTCCAGAATCCGGCGAACAAGAAG 300
Query 300 GAGATTCACTGCGATGATAAGTTGAAGACGATTTTCGATGGCAAAGACAAAGTTGGAATC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 GAGATTCACTGCGATGATAAGTTGAAGACGATTTTCGATGGCAAAGACAAAGTCGGAATC 360
Query 360 ACAGAGATCATGAAGCTCCTGTCACCACATTTTCCTAAATCCGTCTGATTTGGTT-TGGT 418
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||| || |
Sbjct 361 ACAGAGATCATGAAGCTCCTCTCACCACATTTCCCTAAATCCGTCTGATTTGGTGATG-T 419
Query 419 TTTAGCTAACGTAGTAGTATCCAATCTAAGAAGAAATGGTTTGGCTTTTGTGGTTCATTT 478
|| | |||||||||| ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 420 TT-ATCTAACGTAGTTGTATCTA-TCTAAGAAGAAATGGTTTGGCTTTTGTGGTTCATTT 477
Query 479 CGGGATGTATATGAAAAACTCTAGACCCGATTGAGCTTTGGTATGTTAACAAACCAAAAC 538
|||| ||||||||||| ||||| ||||| |||| |||||||||||||||||||||||||
Sbjct 478 CGGGTTGTATATGAAA--CTCTAAACCCGTTTGAACTTTGGTATGTTAACAAACCAAAAC 535
Query 539 aaaaaaaaaCTCTCTTTTGATCCATCTACTGGAGAATATTAT 580
|| || |||||||||||||||||||| ||||||||||||
Sbjct 536 AATAA----CTCTCTTTTGATCCATCTACCGGAGAATATTAT 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27879951585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5