BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473362 Length=580 Score E Sequences producing significant alignments: (Bits) Value AT1G31760.1 | Symbols: | SWIB/MDM2 domain superfamily protein ... 843 0.0 > AT1G31760.1 | Symbols: | SWIB/MDM2 domain superfamily protein | chr1:11372425-11373483 REVERSE LENGTH=585 Length=585 Score = 843 bits (456), Expect = 0.0 Identities = 542/582 (93%), Gaps = 12/582 (2%) Strand=Plus/Plus Query 1 ATTTGTCTGTTTTTAGGGTTTTAGCTT-TGTCTTTAGTCGTTGTTTGTTTCTCTTATCGG 59 ||||| ||||| ||||||||||||||| | ||| ||||||||||||||||||||| |||| Sbjct 2 ATTTGACTGTTGTTAGGGTTTTAGCTTCT-TCTCTAGTCGTTGTTTGTTTCTCTTTTCGG 60 Query 60 aaaaaaaaaaTGGCGGCAATTTCTAGGGTTTTTGGAGGGTTCAGGACACTGATGTCGAAG 119 ||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 61 AAATAAAAAATGGCGGGAATTTCTAGGGTTTTGGGAGGGTTCAGGACACTGATGTCGAAG 120 Query 120 GCGGCGAGTGTTGAGGCCGTTACCGTAGCTGGAGAAGGAAAAGGAATATTCAAGACTCTT 179 ||||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||| | Sbjct 121 GCGGCGACTGTTGAGGCCGTTACTGTAGCCGGAGAAGGAAAAGGGATATTCAAGACTCGT 180 Query 180 CCGGTGTCACAGCAGCTGGCTAGCTTCGCCGGAGAAAGCGAACTCACTCGTGGTTCCGCC 239 ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 181 CCGGTGTCACAGCAGCTAGCTAGCTTCGCCGGAGAAAGGGAACTCACTCGTGGTTCCGCT 240 Query 240 CTGAAGAAAGTTTGGGAGTATGTGAAGCTTCACAATCTCCAGAATCCGGCGAACAAGAAG 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CTGAAGAAAGTTTGGGAGTATGTGAAGCTTCACAATCTCCAGAATCCGGCGAACAAGAAG 300 Query 300 GAGATTCACTGCGATGATAAGTTGAAGACGATTTTCGATGGCAAAGACAAAGTTGGAATC 359 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 301 GAGATTCACTGCGATGATAAGTTGAAGACGATTTTCGATGGCAAAGACAAAGTCGGAATC 360 Query 360 ACAGAGATCATGAAGCTCCTGTCACCACATTTTCCTAAATCCGTCTGATTTGGTT-TGGT 418 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||| || | Sbjct 361 ACAGAGATCATGAAGCTCCTCTCACCACATTTCCCTAAATCCGTCTGATTTGGTGATG-T 419 Query 419 TTTAGCTAACGTAGTAGTATCCAATCTAAGAAGAAATGGTTTGGCTTTTGTGGTTCATTT 478 || | |||||||||| ||||| | |||||||||||||||||||||||||||||||||||| Sbjct 420 TT-ATCTAACGTAGTTGTATCTA-TCTAAGAAGAAATGGTTTGGCTTTTGTGGTTCATTT 477 Query 479 CGGGATGTATATGAAAAACTCTAGACCCGATTGAGCTTTGGTATGTTAACAAACCAAAAC 538 |||| ||||||||||| ||||| ||||| |||| ||||||||||||||||||||||||| Sbjct 478 CGGGTTGTATATGAAA--CTCTAAACCCGTTTGAACTTTGGTATGTTAACAAACCAAAAC 535 Query 539 aaaaaaaaaCTCTCTTTTGATCCATCTACTGGAGAATATTAT 580 || || |||||||||||||||||||| |||||||||||| Sbjct 536 AATAA----CTCTCTTTTGATCCATCTACCGGAGAATATTAT 573 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27879951585 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5