BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473366
Length=2003
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31800.1 | Symbols: CYP97A3, LUT5 | cytochrome P450, family ... 3020 0.0
> AT1G31800.1 | Symbols: CYP97A3, LUT5 | cytochrome P450, family
97, subfamily A, polypeptide 3 | chr1:11396402-11399714 FORWARD
LENGTH=2070
Length=2070
Score = 3020 bits (1635), Expect = 0.0
Identities = 1905/2031 (94%), Gaps = 36/2031 (2%)
Strand=Plus/Plus
Query 1 GGCTATGGCGTTTCCTCTTTCTTATACT-C--CGATTTCCGTTAAACCAGTAACGTACTC 57
||||||||| |||||||||||||||||| | ||||| | ||||||||||||||||||||
Sbjct 41 GGCTATGGCCTTTCCTCTTTCTTATACTCCGACGATTACTGTTAAACCAGTAACGTACTC 100
Query 58 TCGGAGATCGAACTTTGTAGTTTTCGCATCGAATTCTAATGGAAGAGATCCTTCT-GAGG 116
||||||||||||||||||||||||| | |||| |||||||||| ||||||||| | ||||
Sbjct 101 TCGGAGATCGAACTTTGTAGTTTTCTCGTCGAGTTCTAATGGACGAGATCCTT-TAGAGG 159
Query 117 ATAATTCAGTTCCTAATGGCGTGAAAAGCTTGGAGAAGGTTCAAGAGGAGAAGCGTCGTG 176
| |||||||| |||||||| |||||||||||||||||| ||||||| |||||||||||||
Sbjct 160 AGAATTCAGTACCTAATGGTGTGAAAAGCTTGGAGAAGCTTCAAGAAGAGAAGCGTCGTG 219
Query 177 CTGAGTTATCTGCTCGGATTGCTTCTGGAGCTTTCACTGTAC-G-AA---A-------A- 223
|||||||||||||| ||||||||||||||||||||||||||| | || | |
Sbjct 220 CTGAGTTATCTGCTAGGATTGCTTCTGGAGCTTTCACTGTACGGAAATCTAGTTTTCCAT 279
Query 224 -T-C--T--AGAATGGTTTATCTAAGGTTGGGAATTCCAAGCAATGTTCTTGATTTCATG 277
| | | ||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 280 CTACAGTGAAGAATGGTTTATCTAAGATT-GGAATACCAAGCAATGTTCTTGATTTCATG 338
Query 278 TTTGATTGGACTGGTTCTGACGAAGACTACCTCAAGGTTCCTGAGGCTAAAGGGTCGATT 337
||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||
Sbjct 339 TTTGATTGGACTGGTTCTGACCAAGACTACCCCAAGGTTCCTGAGGCTAAAGGCTCGATT 398
Query 338 CAGGCGGTTCGGAACGAAGCTTTCTTTATCCCTTTGTATGAGCTTTTCCTTACTTATGGT 397
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 399 CAGGCGGTCCGGAACGAAGCTTTCTTCATCCCTTTGTATGAGCTTTTCCTTACTTATGGT 458
Query 398 GGCATTTTCAGGTTGACCTTTGGGCCTAAGTCGTTCTTGATCGTGTCGGATCCTTCTATT 457
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 459 GGAATTTTCAGGTTGACCTTTGGGCCTAAGTCATTCTTGATCGTGTCGGATCCTTCTATT 518
Query 458 GCTAAGCATATATTGAAGGACAATGCAAAAGCTTACTCCAAGGGAATTTTAGCTGAAATT 517
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 519 GCTAAACATATATTGAAGGACAATGCAAAAGCTTACTCCAAGGGGATTTTAGCTGAAATT 578
Query 518 CTAGATTTTGTGATGGGAAAAGGACTCATACCGGCTGATGGGGAGATATGGCGTAGACGA 577
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 579 CTAGATTTTGTGATGGGAAAAGGACTCATTCCTGCTGATGGGGAGATATGGCGTAGACGA 638
Query 578 AGACGTGCCATTGTTCCTGCATTGCATCAAAAGTATGTAGCAGCTATGATTAGCTTATTT 637
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 639 AGGCGTGCCATTGTTCCTGCATTGCATCAAAAGTATGTAGCAGCTATGATTAGTTTATTC 698
Query 638 GGAGAAGCTTCAGATAGGCTTTGCCAGAAGCTTGATGCTGCTGCATTGAAAGGGGAAGAA 697
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 699 GGAGAAGCTTCAGATAGGCTTTGTCAGAAGCTTGATGCTGCTGCATTGAAAGGGGAAGAA 758
Query 698 GTAGAGATGGAATCACTCTTCTCTCGTTTGACACTTGATATTATTGGCAAGGCGGTTTTC 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 GTAGAGATGGAATCACTCTTCTCTCGTTTGACACTTGATATTATTGGCAAGGCGGTTTTC 818
Query 758 AATTACGACTTTGACTCCCTAACTAATGATACCGGTGTGATCGAGGCAGTTTACACTGTC 817
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 819 AATTACGACTTTGACTCCCTTACTAATGATACCGGTGTGATCGAGGCAGTGTACACTGTT 878
Query 818 CTAAGAGAAGCTGAAGACAGAAGTGTTTCACCTATTCCTGTTTGGGACATACCGATTTGG 877
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 879 CTAAGAGAAGCTGAAGACAGAAGTGTTTCACCTATTCCTGTTTGGGACATACCCATTTGG 938
Query 878 AAAGATATTTCCCCGCGTCAGAGGAAAGTTGCTACTT-CTCTGAAATTGATCAATGACAC 936
|||||||||||||| |||||||||||||||||||||| || ||||||| |||||||||||
Sbjct 939 AAAGATATTTCCCCACGTCAGAGGAAAGTTGCTACTTCCT-TGAAATTAATCAATGACAC 997
Query 937 ACTTGATGATTTGATCGCCACATGCAAGAGAATGGTAGAAGAAGAGGAGTTGCAGTTTCA 996
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 998 ACTTGATGATTTGATTGCAACATGCAAGAGAATGGTAGAAGAAGAGGAGTTGCAGTTTCA 1057
Query 997 CGAGGAGTATATGAACGAACGAGATCCTAGCATCCTTCACTTTCTTTTGGCTTCAGGAGA 1056
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1058 CGAGGAGTATATGAACGAAAGAGATCCTAGCATCCTTCACTTTCTTTTAGCTTCAGGAGA 1117
Query 1057 TGATGTCTCTAGCAAGCAGCTCCGCGATGACTTGATGACAATGCTTATAGCCGGACATGA 1116
|||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1118 TGATGTCTCTAGTAAGCAGCTTCGTGATGACTTGATGACAATGCTTATAGCCGGACATGA 1177
Query 1117 AACATCGGCGGCAGTATTAACATGGACCTTTTACCTTTTAACAACGGAACCCAGTGTAGT 1176
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1178 AACATCGGCGGCAGTATTAACATGGACCTTTTACCTTTTAACAACGGAACCAAGTGTAGT 1237
Query 1177 TGCCAAACTCCAAGAAGAGGTTGATTCTGTTATTGGAGATAGATTCCCAACCATAGAAGA 1236
||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1238 TGCCAAACTTCAAGAAGAGGTTGATTCTGTAATTGGAGATAGATTCCCAACCATACAAGA 1297
Query 1237 TATGAAAAAGCTGAAATACACTACCCGAGTCATGAATGAGTCATTGAGACTATATCCACA 1296
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1298 TATGAAAAAGCTGAAATACACTACTCGAGTCATGAATGAGTCATTGAGATTATATCCACA 1357
Query 1297 ACCACCAGTACTGATCCGTCGTTCTTTAGAGAACGATATGCTTGGACAGTATCCCATAAA 1356
||||||||||||||||||||||||| |||| || ||||| |||||| ||||||| |||||
Sbjct 1358 ACCACCAGTACTGATCCGTCGTTCTATAGATAATGATATACTTGGAGAGTATCCGATAAA 1417
Query 1357 GAGGGGAGAGGATATCTTCATCTCGGTTTGGAATCTACATCGAAGTCCTCTTCATTGGGA 1416
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1418 AAGGGGAGAGGATATCTTCATCTCGGTTTGGAATCTACATCGAAGTCCTCTGCATTGGGA 1477
Query 1417 TGATGCGGAAAAGTTCAATCCCGAGAGATGGCCTTTGGATGGACCAAACCCAAATGAGAC 1476
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 TGATGCAGAGAAGTTCAATCCCGAGAGATGGCCTTTGGATGGACCAAACCCAAATGAGAC 1537
Query 1477 AAACCAAAACTTCAGTTACTTACCTTTCGGTGGAGGACCGCGGAAATGTATAGGCGACAT 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1538 AAACCAAAACTTCAGTTACTTACCTTTCGGTGGAGGACCGCGGAAATGTATAGGCGACAT 1597
Query 1537 GTTTGCTTCCTTTGAGAATGTGGTAGCAATCGCAATGCTGATTCGAAGATTTGACTTTCA 1596
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1598 GTTTGCTTCCTTTGAGAATGTGGTAGCAATCGCAATGCTTATTCGAAGATTTAACTTTCA 1657
Query 1597 GACTGCACCAGGAGCTCCTCCGGTAAAAATGACTACCGGAGCTACAATACATACCACAGA 1656
|| ||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 1658 GATTGCACCAGGAGCTCCTCCGGTGAAAATGACTACAGGAGCTACAATACACACCACAGA 1717
Query 1657 AGGATTGAGATTGACAGTAACAAAGAGGACAAAACCTCTCGACATACCACCCGTACCGAT 1716
|||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1718 AGGATTGAAATTGACAGTAACAAAGAGGACAAAACCTCTGGACATACCATCCGTACCGAT 1777
Query 1717 ACTTCCAATTGA-AGCTTCCCGGGATGAAGTTTCTTCTGCTCTGTCTTAAGTCTTCATCT 1775
||||||||| || | |||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 1778 ACTTCCAATGGATA-CTTCACGGGATGAAGTTTCATCTGCTCTTTCTTAAGTCTTCATCT 1836
Query 1776 TTGCAAAACTGAAAACAAACAAGCTCAAATGAAAAAGCAAATATCTTGTTTTAGAACAAC 1835
|| |||||||||||||||||||||||| ||||| ||||||| ||||||| |||||||| |
Sbjct 1837 TTACAAAACTGAAAACAAACAAGCTCAGATGAAGAAGCAAAAATCTTGTGTTAGAACAGC 1896
Query 1836 AAATGTAGAATTTGTTGGAACATGACCGATGCTT-CTGATTATTTCTCTGCACTAGTTA- 1893
|||||| ||||| |||||||||||||| |||||| |||||||||| |||||||| || |
Sbjct 1897 AAATGTTGAATT-GTTGGAACATGACCAATGCTTTCTGATTATTTATCTGCACT-GTAAA 1954
Query 1894 -TGCAGACAAGTAAAAATTGTGAAGATTTATTATTCTTTGaaaaaaaaaaTGTTTTTCTC 1952
||||||||||||||| | | ||||||||||||||||||| |||||||||||||||| ||
Sbjct 1955 ATGCAGACAAGTAAAA-T-GAGAAGATTTATTATTCTTTGGAAAAAAAAATGTTTTTGTC 2012
Query 1953 TGCACAGTGAAGATGATATAACTTTTGGATTCTATAAAAGTTCAAATATTT 2003
|||||||||||||| ||||||||| ||| |||||| ||||||||||||||
Sbjct 2013 TGCACAGTGAAGATAATATAACTTCTGGGTTCTATGTAAGTTCAAATATTT 2063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99246477465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5