BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473368
Length=3401
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31810.1 | Symbols: AFH14 | Formin Homology 14 | chr1:113996... 3565 0.0
> AT1G31810.1 | Symbols: AFH14 | Formin Homology 14 | chr1:11399607-11406259
REVERSE LENGTH=4209
Length=4209
Score = 3565 bits (1930), Expect = 0.0
Identities = 2246/2392 (94%), Gaps = 48/2392 (2%)
Strand=Plus/Plus
Query 1025 CCACCGCCACCGCCACCTCCTCCCCCTCCTTTTATGAGCACAGCCTCATTTTcaccccca 1084
||||| |||||||||||||||||||||| ||||| ||||||| | ||||| |||||| ||
Sbjct 1840 CCACCCCCACCGCCACCTCCTCCCCCTCTTTTTACGAGCACAACTTCATTCTCACCCTCA 1899
Query 1085 cca-ccacccccacccccGCCACCTCTCCCTAGTTTCAGCAATAGAGATCCTTTGACAAC 1143
|| ||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1900 -CAGCCACCCCCA---CCACCACCTCTCCCTAGTTTCAGCAATAGAGATCCTTTGACAAC 1955
Query 1144 ATCGCATCAGCCTACCAACAAAACCcctccaccaccacctcctcctcctccgccacct-c 1202
|| |||||| |||| ||| ||||| ||||||||||||||||||||||| |||||| || |
Sbjct 1956 ATTGCATCAACCTATCAATAAAACTCCTCCACCACCACCTCCTCCTCCCCCGCCA-CTGC 2014
Query 1203 ctTTTAGAAGCATCCCTCCGCCATTAGCTCAACCACCACCACCACGtcctcctcctcctc 1262
| | |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2015 CATCTAGAAGCATCCCTCCGCCATTAGCTCAACCACCACCACCACG------TCCTCCTC 2068
Query 1263 ctcctcctcctccGCCACCTTCTTCGAGAAGCATTCCTCCACCCTCAG---CA---CCAC 1316
|||||||||||||||| |||||||| |||||||||||| | ||||||| || ||||
Sbjct 2069 CTCCTCCTCCTCCGCCTCCTTCTTCAAGAAGCATTCCTTCGCCCTCAGCACCACCGCCAC 2128
Query 1317 CGCCACCACCGCCACCTTCGTTTGGGAGCACACGAAATAAGCTTCAGGCGCAACCACCTC 1376
||||||||||||| || ||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 2129 CGCCACCACCGCCTCCGTCGTTTGGGAGCACAGGAAATAAGCGTCAGGCGCAACCACCTC 2188
Query 1377 CGCCTCCGCCTCCACCTCCTCCTCCAATCCAAGCAACTT-TTGCTGCTAAATGTccacca 1435
| ||||| ||| ||||||||||| | |||| || || ||||||||||||| ||
Sbjct 2189 CACCTCCACCT---CCTCCTCCTCCCA--CAAG-AA-TTCCTGCTGCTAAATGT---GCA 2238
Query 1436 ccaccaccaccCCCGCCTCCACCTACATCTCATTCTGGTTCTATTCGTGTTGGCCCACCT 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2239 CCACCACCACCCCCGCCTCCACCTACATCTCATTCTGGTTCTATTCGTGTTGGCCCACCT 2298
Query 1496 TCGGcaccaccaccaccaccaccTCCTCCTCCTAAAGCTAATATTTCAAATGCCCCCAAG 1555
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2299 TCGACACCACCACCACCTCCACCTCCTCCTCCTAAAGCTAATATTTCAAATGCCCCCAAG 2358
Query 1556 CCTCCACCCCCTCCGCCACTTCCTCCTTCATCTACAAGGTTTGGTGCTCCCCCTCAACCT 1615
|| ||| |||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 2359 CCACCAGCCCCTCCGCCACTTCCTCCTTCATCTACAAGGTTGGGTGCTCCCCCT---CCT 2415
Query 1616 CCACCACCACCACCACTATCCAAGACCCATGCTCCGCCTCCACTACCTCTATCCAAGACC 1675
|| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 2416 CCTCCACCACCACCACTATCCAAGACCCCTGCTCCGCCTCCACCACCTCTATCCAAGACC 2475
Query 1676 CCTGTTCCTCCTCCTCCACCAGGGCTGGGTCGTGGTACAAGTAGTGGCCCACCACCAGTG 1735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2476 CCTGTTCCTCCTCCTCCACCAGGGCTGGGTCGTGGTACAAGTAGTGGCCCACCACCACTG 2535
Query 1736 GGAGCTAAAGGTTCAAATGCACCACCACCACCTCCTCCTGCAGGAAGGGGCAGAGCTTCC 1795
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2536 GGAGCAAAAGGTTCAAATGCACCACCACCACCTCCTCCTGCAGGAAGGGGGAGAGCTTCC 2595
Query 1796 TCGGGACTTGGAAGAGGCCGAGGTGTGAGTGTTCCTACTGCTGCACCTAAGAAAGCCGTA 1855
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2596 TTGGGACTTGGAAGAGGCCGAGGTGTGAGTGTTCCTACTGCTGCACCTAAGAAAACCGCG 2655
Query 1856 TTAAAACCTTTGCATTGGTCTAAAGTTACTCGGGCAGCAAAAGGTAGTTTGTGGGCTGAT 1915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2656 TTAAAACCTTTGCATTGGTCTAAAGTTACTCGGGCAGCAAAAGGTAGTTTGTGGGCTGAT 2715
Query 1916 AGTCAGAAGCAGGAAAATCAACCACGGGCCCCTGAAATAGATATATCAGAGCTCGAGAGT 1975
| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2716 ACTCAGAAACAGGAAAATCAACCACGGGCCCCAGAAATAGATATATCAGAGCTCGAGAGT 2775
Query 1976 CTTTTTTCTGCAGTTTCAGATACCACAGCTAAGAAAAGCACAGGTCGCCGGGGTGCTAGC 2035
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 2776 CTTTTTTCTGCAGTTTCAGATACCACAGCTAAGAAGAGCACAGGTCGCCGGGGTTCTAGT 2835
Query 2036 ATCAGCAAACCTGAGAAAGTTCAACTGGTTGACCTGCGAAGAGCAAATAACTGTGAAATT 2095
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2836 ATCAGCAAACCTGAGAAAGTTCAATTGGTTGACCTGCGAAGAGCAAATAACTGTGAAATA 2895
Query 2096 ATGCTTACGAAAATAAAGATTCCTTTACCAGACATGCTTAGTGCAGTGCTAGCCTTGGAT 2155
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 2896 ATGCTCACGAAAATAAAGATTCCTTTGCCAGATATGCTTAGTGCAGTGCTAGCCTTGGAT 2955
Query 2156 TCGTCAGCTCTGGACATCGACCAGGTTGAAAATCTCATCAAATTTTGTCCGACCAAGGAA 2215
|| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2956 TCATTAGCTCTGGACATTGACCAGGTTGAAAATCTCATCAAATTTTGTCCGACCAAGGAA 3015
Query 2216 GAAATGGAAATGTTGAGGAATTATACTGGTGACAAGGAAATGCTTGGAAAGTGTGAACAG 2275
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3016 GAGATGGAACTGTTGAGGAATTATACTGGTGACAAGGAAATGCTTGGAAAGTGTGAACAG 3075
Query 2276 TTTTTCATGGAACTAATGAAGGTTCCACGTATAGAAGCAAAGTTGCGAGTGTTTGGCTTT 2335
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3076 TTTTTCATGGAACTAATGAAGGTTCCACGTATAGAAGCAAAGTTACGAGTGTTTGGCTTT 3135
Query 2336 AAGATTACCTTTGCTTCTCAGGTGGAAGAGTTAAAAAGCTGCTTAAATACAATAAACGCT 2395
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 3136 AAGATTACCTTTGCTTCTCAGGTGGAGGAGTTAAAAAGCTGCCTAAATACAATAAACGCT 3195
Query 2396 GCTAGTAAAGAGGTGAAGGAGTCTGCAAAGTTGCGTCAAATTATGCAAACAATTTTAACA 2455
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3196 GCTACTAAAGAGGTGAAGGAGTCTGCAAAGTTGCGTCAAATTATGCAAACAATTTTAACG 3255
Query 2456 TTGGGAAATGCTCTAAATCAGGGAACTGCGAGAGGTTCTGCTGTGGGGTTCAAACTGGAC 2515
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 3256 TTGGGAAATGCTCTAAATCAGGGAACTGCGAGAGGGTCTGCTGTTGGGTTCAAACTAGAC 3315
Query 2516 AGTCTTCTTAAATTATCTGATACTCGTGCTAGAAATAACAAAATGACTTTGATGCATTAC 2575
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3316 AGTCTCCTTAAATTATCTGATACTCGTGCTAGAAATAACAAAATGACTTTGATGCATTAC 3375
Query 2576 TTATGCAAGCTTGTTGGTGAAAAAATGCCAGAATTGTTGGATTTTGCTAATGACCTTGTT 2635
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3376 TTATGCAAGCTTGTTGGTGAAAAAATGCCAGAATTGCTGGATTTTGCTAATGACCTTGTT 3435
Query 2636 CACTTAGAAGCTGCTTCGAAGATTGAATTGAAAACGTTGGCTGAAGAAATGCAAGCGGCG 2695
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3436 CACTTAGAAGCTGCTTCAAAGATTGAATTGAAAACGTTGGCTGAAGAAATGCAAGCGGCG 3495
Query 2696 ACTAAAGGCCTTGAGAAGGTTGAGCAAGAACTAATGGCTTCAGAAAATGATGGTGCAATT 2755
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 3496 ACTAAAGGCCTTGAAAAGGTTGAGCAAGAACTCATGGCTTCAGAAAATGATGGTGCAATT 3555
Query 2756 TCTTTGGGCTTCAGGAAGGTCTTGAAGGAGTTTCTTGATATAGCGGATGAGGAAGTGAAG 2815
|||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 3556 TCTTTGGGCTTCAGAAAGGTCTTGAAGGAGTTTCTTGATATGGCTGATGAGGAAGTGAAG 3615
Query 2816 ACGCTTGCTTCTTTATATTCAGAAGTGGGAAGAAATGCAGATTCTTTGTCTCACTACTTC 2875
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3616 ACGCTTGCTTCGCTATATTCAGAAGTGGGAAGAAATGCAGATTCTTTATCTCACTACTTC 3675
Query 2876 GGTGAGGATCCAGCTCGATGTCCTTTCGAGCAAGTGACCAAGATTCTGACTCTTTTCATG 2935
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 3676 GGTGAGGATCCAGCTCGATGTCCTTTTGAGCAAGTGACCAAGATTCTGACTCTTTTTATG 3735
Query 2936 AAAACATTCATCAAATCTCGAGAGGAGAATGAAAAACAAGCCGAGGCTGAGAAGAAGAAA 2995
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3736 AAAACATTCATCAAATCCCGAGAGGAGAATGAAAAACAAGCCGAGGCTGAGAAGAAGAAA 3795
Query 2996 CTGGAAAAAGAAGCAAT-AAAGGAGAAGTCAGCGACAAAGAAAGATGCCG-CTGATAACG 3053
||||| ||||||||||| |||| |||||||||||||||||||||||| || | |||||||
Sbjct 3796 CTGGAGAAAGAAGCAATTAAAG-AGAAGTCAGCGACAAAGAAAGATGGCGTC-GATAACG 3853
Query 3054 ACAACGATCTTATCCAGCAGATCCATAGACATAGAACATGAACAAACATCGGTCTTAAAC 3113
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 3854 ACAACGATCTTATCCAGCAGATCCATAGACATAGAACATGAACAAACATCGGTCTTGAAC 3913
Query 3114 CGAAGACCCAAGGTTTTCAGATCGA-C-A-AAA-GCTTTGTTTTATAGGACTCAATGTTG 3169
|||||||| ||||||||||||||| | | ||| ||||||||||||||||||||||||||
Sbjct 3914 GGAAGACCCGAGGTTTTCAGATCGATCGATAAAAGCTTTGTTTTATAGGACTCAATGTTG 3973
Query 3170 CACATACGGAACAAGAGCAGAGATCTTTCCTAGATCTTAGACAAAGTAGTCAACTTCTAT 3229
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3974 CACATACGGAACAAGAGCAGAGATCTTTCCTAGATCTTAGACAAAGTAGTCAACGTCTAT 4033
Query 3230 GATGTTTAGATGGAAGTGTTTTATCTCTGATCTCTTCATTGATGTAAAAACTCAGAGGTT 3289
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 4034 GATGTTTAGATGGAAGTGTTTTATCTCTGATCACTTCATTGATGTAAAA--TCAGAGGTT 4091
Query 3290 CGTGTTTATGTCCCAGTCCTAGAAATATTTGAACTTTTATAGAATCCAAAAGTTATATCA 3349
||| ||||||||| || | |||||||||||||| |||||| ||| ||||||||| |
Sbjct 4092 CGTATTTATGTCCTAG----A-AAATATTTGAACTTACATAGAACCCAGAAGTTATATTA 4146
Query 3350 TCTTCACTGTGCAGAGAAAAACAttttttttttCAAAGAATAATAAATCTTC 3401
||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 4147 TCTTCACTGTGCAGACAAAAACATTTTTTTTTCCAAAGAATAATAAATCTTC 4198
Score = 673 bits (364), Expect = 0.0
Identities = 433/466 (93%), Gaps = 5/466 (1%)
Strand=Plus/Plus
Query 653 AATGGAGATGATGCTGCTTTGTGGTTGCTAAAACAACTTGCTGCCATAAATGATGCGAAA 712
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 1339 AATGGAGATGATGCTGCTTTGTGGTTGCTGAAACAACTTGCTGCCATTAATGATGCAAAA 1398
Query 713 GAGTTTTCAAGATTTCGGCACAAAGGGAGTTTTTATTTTAATTCTCCTGACTCTGAAGAG 772
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 GAGTTTACAAGATTTCGGCACAAAGGGAGTTTTTATTTTAATTCTCCTGACTCTGAAGAG 1458
Query 773 GAGACAAACACATCTAGTGCCGCTGATAGTTCAGATGAAGGCTTTGATGCCTTTCAGAGA 832
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1459 GAGACAAACACATCTAGTGCCGCTGATAGTTCAGATGAAGGCTTTGAAGCCATTCAGAGA 1518
Query 833 CCTCATATTCGTATACCTTTTGATAATGATGAAACAGACGACATTACTTTGTCTGTCGCT 892
|||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1519 CCTCGTATTCATATACCTTTTGATAATGATGATACAGACGACATTACTTTGTCTGTCGCT 1578
Query 893 CATGAATCTTCAGAGGAGCCTCATGAATTCTCTCGTCACCAACATCATGAAGTTCCAGCA 952
|| ||||| ||||||||||||||||||||||||| |||||| ||||||||| |||||||
Sbjct 1579 CACGAATCGTCAGAGGAGCCTCATGAATTCTCTCATCACCATCATCATGAAATTCCAGCG 1638
Query 953 AAAGACAGTGTCGAC--CC-TTTGACTCTTCCATCAGATCCACCATCTTCTGTTGCTCAT 1009
||||||||||||||| || ||||| |||||||||||||||||||||||||| || ||||
Sbjct 1639 AAAGACAGTGTCGACAACCCTTTGAATCTTCCATCAGATCCACCATCTTCTGGTGATCAT 1698
Query 1010 GTCACACTTCTGCCTCCACCGCCACCGCCACCTCCTCCCCCTCCTTTTATGAGCACAGCC 1069
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 1699 GTCACACTTCTGCCTCCACCGCCACCGCCACCTCCTCCCCCTCTTTTTACGAGCACAACT 1758
Query 1070 TCATTTTcacccccacca-ccacccccacccccGCCACCTCTCCCT 1114
||||| |||||| ||| | ||||||||||| || || |||| ||||
Sbjct 1759 TCATTCTCACCCTCAC-AGCCACCCCCACCGCCACCTCCTCCCCCT 1803
Score = 521 bits (282), Expect = 1e-146
Identities = 308/320 (96%), Gaps = 3/320 (1%)
Strand=Plus/Plus
Query 336 AATGTCATGTAATCAAAATTGACATCCAGTGCTGGGTTCAAGGAGATGTTGTACTGGAGT 395
||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 983 AATGTGACGTAATCAAAATTGATATCCAGTGCTGGGTTCAAGGAGATGTTGTACTGGAGT 1042
Query 396 GTGTGCATATGGATTTAGATCCAGAACGAGAGGTTATGATGTTTCGTGTGATGTTCAATA 455
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1043 GTGTGCATATGGATTTGGATCCAGAACGAGAGGTTATGATGTTTCGTGTGATGTTTAATA 1102
Query 456 CTGCATTTATCAGGTCCAACATACTAATGTTGAACTCTGACAACTTGGATATTCTTTGGG 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 CTGCATTTATCAGGTCCAACATACTAATGTTGAACTCTGACAACTTGGATATTCTTTGGG 1162
Query 516 AAGCCAAGGATCATTACCCAAAAGGGTTTCGAGCAGAGGTCTTGTTTGGAGAAGTTGAGA 575
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 AGGCCAAGGATCATTACCCAAAAGGGTTTCGAGCAGAGGTCTTGTTTGGAGAAGTTGAGA 1222
Query 576 ATGCCTCGCCTCAGAAAGTTCCCACCCCAATAGTAAATGGTGATGAGACTGGTGGATTAC 635
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1223 ATGCATCGCCTCAGAAAGTTCCAACCCCAATAGTAAATGGTGATGAGACTGGTGGATTGC 1282
Query 636 C-ATTGAAGC-TTT-CTAGA 652
| |||||||| ||| |||||
Sbjct 1283 CCATTGAAGCCTTTTCTAGA 1302
Score = 475 bits (257), Expect = 1e-132
Identities = 301/321 (94%), Gaps = 8/321 (2%)
Strand=Plus/Plus
Query 23 TTCAAAATTTGAAAACCAAACGTTCCCGATTTTCATCCTTTTGTGTTCTCCACCGG-AGC 81
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 54 TTCAAAATTTGAAAACCAAACGTTCCCGATTTTCATCCTTTTGTCTTCTCCACCGGAAGC 113
Query 82 CTTTACGCCGCAATACCGCCGCCTTCGCCGCTTCAGCTGCATCGGTGAATGTAAATAGCC 141
|||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 114 CTTTGCGCCGCAATACCGCCGCCTCCGCCGCTTCAGCTGCATCGGTGATTGTAAATAGCC 173
Query 142 GTCGTCTTATTCTAATAAGCATCTTCCAATGTCTTTGTTAAGTAGGTTCTTTTACAAGAG 201
||| ||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 174 GTCTTCTTATTCTAACAAGGTTCTTCCAATGTCTTTGTTAAGTAGATTCTTTTACAAGAG 233
Query 202 ACCACCAGATGGATTACTTGAATTTGCTGATAGA-TTT-T-T----GATTCATGTTTTTG 254
|||||||||||||||||||||||||||||||||| ||| | | ||||||||||||||
Sbjct 234 ACCACCAGATGGATTACTTGAATTTGCTGATAGAGTTTATGTTTTTGATTCATGTTTTTG 293
Query 255 CACGGAGGTGTTGGCGGATAGCTTGTACCAAATCTTCTTGCATGAAGTTATCAATGATTT 314
||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 294 CACGGAGGTGTTGGCTGATAGCTTGTATCAGATCTTCTTGCATGAAGTTATCAATGATTT 353
Query 315 ACACGAAGAATTCCCGGAATC 335
|||||||||||||||||||||
Sbjct 354 ACACGAAGAATTCCCGGAATC 374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 169263265682
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5