BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473369
Length=465
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31812.1 | Symbols: ACBP6, ACBP | acyl-CoA-binding protein 6... 710 0.0
> AT1G31812.1 | Symbols: ACBP6, ACBP | acyl-CoA-binding protein
6 | chr1:11410875-11412204 REVERSE LENGTH=641
Length=641
Score = 710 bits (384), Expect = 0.0
Identities = 441/467 (94%), Gaps = 9/467 (2%)
Strand=Plus/Plus
Query 1 CCCATATATATCTCACGCGTCGTCCTCGTCTTCTCCGTCTTACAGTGATTTAATTCTCCT 60
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 16 CCCATATATATCTCACGCGTTGTCCTCGTCTTCTCCGTCTTACACTGATTTAATTCTCCT 75
Query 61 ACCTATCTCAACTTCCTACGTTTATTCATCATTCATGGGTTTGAAGGAGGAATTTGAGGA 120
||| |||||||||||| |||| || | ||| ||||||||||||||||||||||||||||
Sbjct 76 ACCAATCTCAACTTCCGACGTCTA-T--TCA-TCATGGGTTTGAAGGAGGAATTTGAGGA 131
Query 121 GCACGCTGAGAAAGTGAATACGCTCACCAAGTTGCCATCAAACGAGGATTTGCTCATTCT 180
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 132 GCACGCTGAGAAAGTGAATACGCTCACGGAGTTGCCATCCAACGAGGATTTGCTCATTCT 191
Query 181 CTATGGACTCTACAAGCAAGCCAAGTTCGGGAATGTGGACACCAGTCGTCCTGGAATGTT 240
||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 192 CTACGGACTCTACAAGCAAGCCAAGTTTGGGCCTGTGGACACCAGTCGTCCTGGAATGTT 251
Query 241 CAGCATGAAGGAGAGAGCCAAGTGGGATGCTTGGAAGGCTGTTGAAGGGAAATCATCGGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 CAGCATGAAGGAGAGAGCCAAGTGGGATGCTTGGAAGGCTGTTGAAGGGAAATCATCGGA 311
Query 301 AGAAGCCATGAATGACTATATCACTAAGGTCAAGCAACTCTTGGAAGATGCTGCTTCCA- 359
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 312 AGAAGCCATGAATGACTATATCACTAAGGTCAAGCAACTCTTGGAAGTTGCTGCTTCCAA 371
Query 360 GTGCTTGAACCTGATGGAATCATATCCTCCTCTGCAGTAACTTTATCTTAAGCAATCAAA 419
| |||| ||||||||| ||||| |||||| |||||||||||||||||||||||| |||||
Sbjct 372 G-GCTTCAACCTGATG-AATCAAATCCTCATCTGCAGTAACTTTATCTTAAGCA-TCAAA 428
Query 420 -TAACATAGCATAAGACTTGTTCTTGCTCTTGTGTTTCTATCATATT 465
|||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 429 ATAACATTGCATAAGACTTGTTCTTGCTCTTGTGTTTCTATCATATT 475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22103024680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5