BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473376
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31880.1 | Symbols: NLM9, BRX | DZC (Disease resistance/zinc... 2167 0.0
AT2G21030.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Disease r... 898 0.0
> AT1G31880.1 | Symbols: NLM9, BRX | DZC (Disease resistance/zinc
finger/chromosome condensation-like region) domain containing
protein | chr1:11445490-11450189 FORWARD LENGTH=1574
Length=1574
Score = 2167 bits (1173), Expect = 0.0
Identities = 1396/1496 (93%), Gaps = 45/1496 (3%)
Strand=Plus/Plus
Query 1 TTTTAGTTCTCGGGTCACCCAATAACCCGAATTCTCGACCCGGTTTCGTCTCTGTTCTCa 60
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 26 TTTCAGTTCTCGGGTCACCCAATAACCCGACTTCTCGACCCGGTTTCGTCTCTGTTCTCA 85
Query 61 tttttt-caaa----t-tt-c---------ag------a-gggtttttgattttggagat 97
|||||| |||| | || | || | |||||||||| |||||||||
Sbjct 86 TTTTTTCCAAATTTCTCTTCCGGAAAATGAAGATTTCTATGGGTTTTTGAGTTTGGAGAT 145
Query 98 tttCTCAGTGAAGTTTATTACAGAACCAGATTCGAAGAAGAAGACATTTCAGCCATTGAT 157
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 146 TTTCTCAGTGAAGTTTATTACATAATCAGATTCGAAGAAGAAGACATTTCAGCCATTGAT 205
Query 158 GGTCTATTTATAGACTTAGACTCAGAACTAACCCCACTCGTGCCGGCTTCCTAAATAGAC 217
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 GGTCTATTTATAGACGTAGACTCAGAACTAACCCCACTCGTGCCGGCTTCCTAAATAGAC 265
Query 218 CAAAACCCTCAAGAGG-AAATAAAGCAGAAGCTA-CTATCTCTTA-TATCTCAAAAATCT 274
|||| || |||||||| ||||||||||||||||| ||| || || |||||||| |||||
Sbjct 266 CAAAGCCTTCAAGAGGAAAATAAAGCAGAAGCTAGCTA--TC-TAGTATCTCAATAATCT 322
Query 275 CAAATCA-AGTCGCTTCATTTCTCAGATATCGAAACACAAAGGTCTGAAAAGGCAGAGAA 333
|| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 CAGATCATA-TCGCTTCATTTCTCAGATATCGAAACACAAAGGTCTGAAAAGGCAGAG-- 379
Query 334 CAACAACACaaaaaaaaGAGACCAAAGATGTTTTCTTGCATAGCTTGTACCAAAGCAGAC 393
|||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 380 -AACAACTC--AAAAAAGAGACCAAAAATGTTTTCTTGCATAGCTTGTACCAAAGCAGAC 436
Query 394 GGAGGTGAAGAAGTCGAAAATGGAGCGCGTGGAGGCACCACTCCCAATACTAAAGAAGCC 453
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 437 GGAGGTGAAGAAGTCGAACATGGAGCGCGTGGAGGCACCACTCCCAATACTAAAGAAGCC 496
Query 454 GTCAAAAGCCTAACCATTCAGATTAAAGATATGGCTTTGAAATTCTCTGGTGCTTATAAA 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 GTCAAAAGCCTAACCATTCAGATTAAAGATATGGCTTTGAAATTCTCTGGTGCTTATAAA 556
Query 514 CAATGCAAGCCATGCACTGGTTCTTCTAGTAGTCCCTTGAAGAAAGGACATAGACCGTTC 573
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct 557 CAATGCAAGCCATGCACTGGTTCCTCTAGTAGTCCCTTGAAGAAAGGACATAGATCATTT 616
Query 574 CCGGATTATGACAATGCTTCTGAAGGTGTTCCATACCCTTACATGGGTGGAAGTGCGGGT 633
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||
Sbjct 617 CCGGATTATGACAATGCCTCTGAAGGTGTTCCATACCCTTTCATGGGTGGAAGTGCTGGT 676
Query 634 TCAACTCCTGCTTGGGACTTCACAAATTCCTCTCACCATCCAGCTGGACGGTTAGAATCA 693
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 677 TCAACTCCTGCTTGGGACTTCACAAACTCCTCTCATCATCCAGCTGGACGGTTAGAATCA 736
Query 694 AAGTTCACCTCAATATATGGAAATGATCGAGAATCTATCTCTGCACAGTCTTGTGATGTG 753
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 AAGTTCACTTCAATATATGGAAATGATCGAGAATCTATCTCTGCACAGTCTTGTGATGTT 796
Query 754 GTACTGGATGATGAAGTG-CCAAAAGAGTGGATGGCTCAAGTAGAACCCGGTGTTCATAT 812
|||||||||||||| | | ||||||||||||||||||||||||||||| |||||||||||
Sbjct 797 GTACTGGATGATGATG-GACCAAAAGAGTGGATGGCTCAAGTAGAACCTGGTGTTCATAT 855
Query 813 CACATTCGCTTCGCTTCCCACTGGAGGAAATGATCTCAAACGGATCCGCTTCAGCCGGGA 872
|||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 856 CACATTTGCTTCTCTTCCCACTGGAGGAAATGATCTCAAACGGATCCGTTTCAGCCGAGA 915
Query 873 GATGTTCGATAAGTGGCAAGCTCAACGGTGGTGGGGTGAGAACTATGACAAGATCGTTGA 932
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 GATGTTTGATAAGTGGCAAGCTCAACGGTGGTGGGGTGAGAACTATGACAAGATCGTTGA 975
Query 933 GCTTTACAATGTACAGAGATTTAACCGCCAAGCCCTTCAAACACCTGCACGATCCGAAGA 992
||||||||||||||||||||||||||||||||| || ||||| |||||| ||||||| ||
Sbjct 976 GCTTTACAATGTACAGAGATTTAACCGCCAAGCTCTCCAAACGCCTGCAAGATCCGACGA 1035
Query 993 TCAGTCACAGAGAGATTCAACGTACTCAAAGATGGATTCAGCGAGAGAAAGCAAAGACTG 1052
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1036 TCAGTCACAGAGAGATTCAACGTACTCAAAGATGGATTCAGCAAGAGAAAGCAAAGACTG 1095
Query 1053 GACTCCAAGACACAACAACTTCAGACCTCCAGGAAGTGTCCCGCATCACTTTTATGGCGG 1112
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1096 GACTCCAAGACACAAT---TTCAGACCTCCAGGATCTGTCCCGCATCACTTTTATGGCGG 1152
Query 1113 CTCTAGCAACTATGGACCAGGAAGTTATCATGGAGGACCACCAATGGATGCAGCACGAAC 1172
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1153 CTCTAGCAACTATGGACCAGGAAGTTATCATGGAGGACCACCGATGGATGCAGCAAGAAC 1212
Query 1173 CACCACTTCTTCCAGAGATGATCCACCCTCCATGAGCAATGCTAGTGAAATGCAAGCTGA 1232
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1213 CACAACTTCTTCCAGAGATGATCCACCTTCCATGAGCAATGCTAGTGAAATGCAAGCTGA 1272
Query 1233 GTGGATCGAAGAAGACGAGCCCGGTGTTTACATTACCATCAGACAATTAGCTGATGGGAC 1292
|||||| ||||| |||||||| ||||||||||||||||||||||||||| | ||||||||
Sbjct 1273 GTGGATTGAAGAGGACGAGCCTGGTGTTTACATTACCATCAGACAATTATCAGATGGGAC 1332
Query 1293 TAGAGAGCTACGTCGAGTCAGATTCAGCCGGGAAAGATTTGGGGAAGTGCATGCAAAGAC 1352
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1333 TAGAGAGCTACGTCGAGTCAGATTCAGCCGGGAACGGTTTGGGGAAGTGCATGCAAAGAC 1392
Query 1353 ATGGTGGGAGCAGAACAGAGAGAGAATACAAACACAGTACCTCTAAAAGAAAATGAAACA 1412
|||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| |
Sbjct 1393 ATGGTGGGAGCAGAACAGAGAGAGAATACAAACACAGTACCTCTAA--GCAAACGAAATA 1450
Query 1413 TTATGAGT-CCAAA-TCTTTAATTAATTAATTAATCTCATTCACATAACAACACAA 1466
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1451 TTATGAGTACCAAAATCTTTAATTAATTAATTAATCTCCTTCACATAACAACACAA 1506
Score = 80.5 bits (43), Expect = 4e-14
Identities = 45/46 (98%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 1467 TTTTGTTCATCTTAGCTTAACATCTATACATAAATCAAGTGTTTTG 1512
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1529 TTTTGTTCATCTTAGCTTAACATCTATACATAAATTAAGTGTTTTG 1574
> AT2G21030.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Disease
resistance/zinc finger/chromosome condensation-like region
(InterPro:IPR013591); BEST Arabidopsis thaliana protein match
is: DZC (Disease resistance/zinc finger/chromosome condensation-like
region) domain containing protein (TAIR:AT1G31880.1);
Has 250 Blast hits to 250 proteins in 17 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 250; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:9024536-9025578
REVERSE LENGTH=737
Length=737
Score = 898 bits (486), Expect = 0.0
Identities = 626/688 (91%), Gaps = 31/688 (5%)
Strand=Plus/Plus
Query 807 TCATATCACATTCGCTTCGCTTCCCACTGGAGGAAATGATCTCAAACGGATCCGCTTCAG 866
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 36 TCATATCACATTCGCTTCTCTTCCCACTGGAGGAAATGATCTCAAACGCATCCGCTTCAG 95
Query 867 CCGGGAGATGTTCGATAAGTGGCAAGCTCAACGGTGGTGGGGTGAGAACTATGACAAGAT 926
||| ||||||| | |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 96 CCGAGAGATGTACAATAAGTGGCAAGCTCAACGGCGGTGGGGTGAGAACTATGACAAGAT 155
Query 927 CGTTGAGCTTTACAATGTACAGAGATTTAACCGCCAAGCCCTTCAAACACCTGCACGATC 986
||||||||||||||||||||||||||||||||||||||| || ||||| |||||| ||||
Sbjct 156 CGTTGAGCTTTACAATGTACAGAGATTTAACCGCCAAGCTCTCCAAACGCCTGCAAGATC 215
Query 987 CGAAGATCAGTCACAGAGAGATTCAACGTACTCAAAGATGGATTCAGCGAGAGAAAGCAA 1046
||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 216 CGACGATCAGTCACAGAGAGATTCAACATACTCAAAGATGGATTCAGCAAGAGAAAGCAA 275
Query 1047 AGACTGGACTCCAAGACACAACAACTTCAGACCTCCAGGAAGTGTCCCGCATCACTTTTA 1106
||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 276 AGACTGGACTCCAAG--AC-ACAACTTCAGACCTCCAGGATCTGTCCCGCATCACTTTTA 332
Query 1107 TGGCGGCTCTAGCAACTATGGACCAGGAAGTTATCATGGAGGACCACCAATGGATGCAGC 1166
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 333 TGGCGGCTCTAGCAACTATGGACCAGGAAGTTATCATGGAGGACCACCGATGGATGCAGC 392
Query 1167 ACGAACCACCACTTCTTCCAGAGATGATCCACCCTCCATGAGCAATGCTAGTGAAATGCA 1226
| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 393 AAGAACCACAACTTCTTCCAGAGATGATCCACCTTCCATGAGCAATGCTAGTGAAATGCA 452
Query 1227 AGCTGAGTGGATCGAAGAAGACGAGCCCGGTGTTTACATTACCATCAGACAATTAGCTGA 1286
|||||||||||| ||||| ||| ||||||||||||||||||| |||||||||||| | |
Sbjct 453 AGCTGAGTGGATTGAAGAGGACTAGCCCGGTGTTTACATTACTATCAGACAATTATC--A 510
Query 1287 TGGGACTAGAGAGCTACGTCGAGTCAGATTCAGCCGGGAA-AGATTTGGGGAAGTGCATG 1345
| | | | |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 511 -G--A-T-G-----TACGTCGAGTCAGATTCAGCCGGGAACAG-TTTGGGGAAGTGCATG 559
Query 1346 CAAAGACATGGTGGGAGCAGAACAGAGAGAGAATACAAACACAGTACCTCTAAAAGAAAA 1405
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 560 TTAAGACATGGTGGGAGCAGAACAGAGAGAGAATACAAACACAGTACCTCTAAAA-A--- 615
Query 1406 TGAAACATTATGAG-T-C-C-A--A-A-TCTTTAATTAATTAATTAATCTCATTCACATA 1457
||||||||||||| | | | | | | ||||||||||||||||||||||||||||||||
Sbjct 616 -GAAACATTATGAGCTTCTCTACCACAATCTTTAATTAATTAATTAATCTCATTCACATA 674
Query 1458 ACAACACAATTTTGTTCATCTTAGCTTA 1485
||||||||| | | | ||| || |||||
Sbjct 675 ACAACACAACTATATACATTTT-GCTTA 701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74598009870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5