BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473379
Length=1800
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31910.1 | Symbols: | GHMP kinase family protein | chr1:114... 2900 0.0
> AT1G31910.1 | Symbols: | GHMP kinase family protein | chr1:11457126-11461825
FORWARD LENGTH=2345
Length=2345
Score = 2900 bits (1570), Expect = 0.0
Identities = 1736/1814 (96%), Gaps = 19/1814 (1%)
Strand=Plus/Plus
Query 1 CCGCCGGTCATTCACTGCCGCCGATTTCAAACTT-CCCGATCATTTCCGGCGATATCCAA 59
|||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 534 CCGCCGGTCATTTACTGCCGCCGATTTCAAA-TTATCCGATCATTTCCGGCGATATCCAA 592
Query 60 TCGCAGTCAGAGGTGAATCT-GGGCTTTGATCAGCGATTATC----T---TC---GGAAA 108
|||||| | ||||||||||| ||| ||||||||||||||||| | || | |||
Sbjct 593 TCGCAGACTGAGGTGAATCTGGGGTTTTGATCAGCGATTATCTTTGTCACTCTTTGAAAA 652
Query 109 TGGCTGTTGTTGCTTCTGCTCCTGGGAAGGTTTTGATGACTGGAGGCTACCTTGTACTCG 168
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 653 TGGCTGTTGTTGCTTCTGCTCCTGGGAAAGTTTTGATGACTGGAGGCTACCTTGTACTCG 712
Query 169 ATAAGCCAAATGCGGGGCTTGTGTTGAGTACAAATGCACGGTTCTACGCGATTGTGAAGC 228
| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 713 AGAAGCCAAATGCAGGGCTTGTGTTGAGTACAAATGCACGGTTTTACGCGATTGTGAAGC 772
Query 229 CGATCAATGAAGAAGTCAAGCCTGAAAGTTGGGCATGGCAATGGACAGATGTCAAATTAA 288
| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 773 CAATCAACGAAGAAGTCAAGCCTGAAAGTTGGGCATGGAAATGGACAGATGTCAAATTAA 832
Query 289 CATCACCACAGCTCTCGAGAGAAAGCATGTATAAACTGTCACTGAAACATTTGACTCTTC 348
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 833 CATCACCACAGCTCTCGAGAGAAAGCATGTATAAACTGTCACTGAATCATTTGACTCTTC 892
Query 349 AGTCTGTGTCTGCAAGTGATTCAAGAAACCCCTTTGTAGAGCATGCAATACAGTATGCTA 408
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 893 AGTCTGTGTCTGCAAGTGATTCAAGAAACCCCTTTGTAGAGCATGCGATACAGTATGCTA 952
Query 409 TAGCTGCTGCTCATTTGGCAACTGACAAGGACAAAGAAGCATTGCACAAACTCTTCTTGC 468
|||||||||||||||||||||| || |||||||||||| |||||||||||||||| ||||
Sbjct 953 TAGCTGCTGCTCATTTGGCAACCGAGAAGGACAAAGAATCATTGCACAAACTCTTATTGC 1012
Query 469 AAGGTCTTGATATCACAATATTAGGCTCCAATGACTTTTACTCATATCGGAACCAGATAG 528
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 AAGGTCTTGATATAACAATATTAGGCTCCAATGACTTTTACTCATATCGGAACCAGATAG 1072
Query 529 AATC-GCTTGGGCTTCCATTGACACCAGAATCGCTGGGTACCCTTGCACCTTTTGCATCA 587
|||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1073 AATCGGC-TGGGCTTCCATTGACACCAGAATCGCTGGGTACCCTTGCACCGTTTGCATCA 1131
Query 588 ATCACATTCAATGCTGCGGAGTCAAATGGTGCTAATTCCAAGCCTGAAGTAGCAAAAACT 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 ATCACATTCAATGCTGCGGAGTCAAATGGTGCTAATTCCAAGCCTGAAGTAGCAAAAACT 1191
Query 648 GGCTTAGGTTCTTCTGCAGCAATGACAACAGCTGTGGTTGCAGCTCTCTTACATTATCTT 707
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1192 GGCTTAGGTTCTTCTGCAGCAATGACAACAGCTGTGGTTGCAGCTCTGTTACATTATCTT 1251
Query 708 GGAGTTGTTGACCTATCTGATCCATGTAAAGAAGGAAATTTTGGTTGTTCTGATCTAGAT 767
||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1252 GGAGTGGTTGACCTATCTGATCCATGTAAAGAAGGAAAGTTTGGCTGTTCTGATCTAGAT 1311
Query 768 GTTATCCATATGATAGCACAAACGTCTCATTGTCTTGCACAAGGGAAGGTCGGAAGTGGG 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 GTTATCCATATGATAGCACAAACGTCTCATTGTCTTGCACAAGGGAAGGTCGGAAGTGGG 1371
Query 828 TTCGATGTCAGCTGTGCTGTCTATGGGAGTCAGCGTTATGTTCGCTTCTCTCCAGAAGTC 887
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1372 TTTGATGTCAGCTGTGCTGTCTATGGAAGTCAGCGTTATGTTCGCTTCTCTCCAGAAGTC 1431
Query 888 TTGTCATTTGCTCAGGTTGCAGTAACAGGTCTGCCGTTAACTGAAGTTATTGGTACAATT 947
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1432 TTGTCATTTGCTCAGGTTGCAGTAACAGGTCTGCCATTAAATGAAGTTATTGGTACAATT 1491
Query 948 TTGAAGGGGAAATGGGACCATGACAGAACTGAGTTCTCTTTACCACCACTGATGAATCTT 1007
|||||||| ||||||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 1492 TTGAAGGGAAAATGGGACAATAAGAGAACTGAGTTCTCTTTACCACCACTGATGAATCTT 1551
Query 1008 TTCCTTGGAGAACCTGGAAGTGGTGGATCCTCCACACCATCAATGGTAGGTGCTGTAAAG 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1552 TTCCTTGGAGAACCTGGAAGTGGTGGATCCTCCACACCATCAATGGTAGGTGCAGTAAAG 1611
Query 1068 AAGTGGCAAATGTCTGATCCAGAGAAGGCACGAGAAAATTGGCAGAAGTTGTCAGATGCA 1127
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1612 AAGTGGCAAATGTCTGATCCAGAGAAGGCACGAGAAAACTGGCAGAATTTGTCAGATGCA 1671
Query 1128 AATTTAGAACTGGAAACTAAGCTAAACGTTCTGAGCAAATTAGCTAAAGACCACTGGGAT 1187
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1672 AATTTAGAACTGGAAACTAAGCTAAACGATCTGAGCAAATTAGCTAAAGACCACTGGGAT 1731
Query 1188 GTTTATCTAGGAGTCATTAAGTCTTGTAGTGTGCTTACTTCTGAAAAGTGGGTGCTACAT 1247
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1732 GTTTATCTACGAGTCATTAAGTCTTGTAGTGTGCTTACTTCTGAAAAGTGGGTGTTACAT 1791
Query 1248 GCTACTGAACCAATCAATGAAGCCATTATTAAAGAACTCTTAGAGGCAAGAGAAGCTATG 1307
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 GCTACTGAACCAATCAACGAAGCCATTATTAAAGAACTCTTAGAGGCAAGAGAAGCTATG 1851
Query 1308 TTGAGGATCAGAATTCTTATGCGCCAGATCGGTGAGGCTGCCAGTGTTCCGATAGAGCCT 1367
||||||||||||||||||||||| ||||| |||||||| || || |||||||||||||||
Sbjct 1852 TTGAGGATCAGAATTCTTATGCGTCAGATGGGTGAGGCGGCTAGCGTTCCGATAGAGCCT 1911
Query 1368 GAATCTCAAACTCAACTTTTGGATTCTACAATGAATGCTGAAGGAGTTCTACTTGCTGGT 1427
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1912 GAATCTCAAACTCAACTTTTGGATTCTACAATGAGTGCTGAAGGAGTTCTACTTGCTGGT 1971
Query 1428 GTTCCTGGAGCTGGTGGATTTGATGCCATATTTGCAATCACTTTAGGTGATTCCGGCAGC 1487
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1972 GTTCCTGGAGCTGGTGGATTTGATGCCATATTTGCAATCACTTTAGGGGATTCCGGCACC 2031
Query 1488 AAACTGACCCAGGCATGGAGTTCGCACAATGTTTTGGCCTTGTTGGTGAGAGAAGATCCA 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2032 AAACTGACCCAGGCATGGAGTTCGCACAATGTTTTGGCCTTGTTGGTGAGAGAAGATCCA 2091
Query 1548 CACGGTGTTTGCCTAGAAAGTGGTGATCCACGCACCACAGGTATTACTTCAGGCGTTTCA 1607
|| || |||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 2092 CATGGCGTTTGCCTAGAAAGTGGTGATCCACGAACCACATGTATTACTTCAGGCGTTTCA 2151
Query 1608 TCAATTCATCTTGAGTAAGCAACATTGTTTGGCAGTGTCCTATTATTAGGTGCATCACCA 1667
|||||||| ||||||||| ||||||||||| |||||||| |||||||||||| ||||||
Sbjct 2152 TCAATTCACCTTGAGTAAACAACATTGTTT--CAGTGTCCAATTATTAGGTGCGTCACCA 2209
Query 1668 AGTTCGGATGAGTATACTGTTTTTCATATAGACTTGGGTGCTAAATTTCTTGGTGTAAGC 1727
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2210 AGTTCGGTTGAGTATACTGTTTTGCATATAGACTTGGGTGCTAAATTTCTTGGTGTAAGC 2269
Query 1728 ATTTTT-TCACCCATTGTAAGGTCTTTAACTCTTGGAAAACTTGCGGGAAAATAAAATAA 1786
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2270 ATTTTTAT-ACCCATTGTAAGGTCTTTAACTCTTGGAAAACTTGCGGGAAAATAAAATAA 2328
Query 1787 AGTTGATTTAAAAT 1800
||||||||| ||||
Sbjct 2329 AGTTGATTTCAAAT 2342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89055766830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5