BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473380
Length=1948
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31920.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3014 0.0
> AT1G31920.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:11461855-11463848 REVERSE LENGTH=1994
Length=1994
Score = 3014 bits (1632), Expect = 0.0
Identities = 1803/1886 (96%), Gaps = 10/1886 (1%)
Strand=Plus/Plus
Query 67 ACATTTTCGGACACC-AAATCCCTAGTTTCTTAATGGTTACGAGGAGAGGATGATCAAGG 125
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 115 ACATTTTCGGACACCAAAATCCCTAGTTTCTTAATGGTTATGAGGAGAGGATGATCAAGG 174
Query 126 CACCAACAATTCTACAGTCTCTATTGGCTTCTAGAGACGATTTAACACATAACCCAGAAG 185
|| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 175 CA-C--CAATTCTACAGTCTCTATTGGCTTCTAGAGACGATTTAACTCATAACCCAGAAG 231
Query 186 TCAACAACTGTGGAGGGAAAGAGCAAGAATGTTTATACCTCTTGAAGAGATGCAACAACA 245
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 232 TCAACAACTTTGGAGGGAAAGAGCAAGAATGTTTATACCTCTTGAAGAGATGCCACAACA 291
Query 246 TTGACGAGTTCAAGCAAGTTCACGCCAGATTCATCAAGCTAAGTTTGTTCTGCTCTTCTT 305
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 292 TAGACGAGTTCAAGCAAGTTCACGCCAGATTCATCAAGCTAAGTTTGTTCTATTCTTCTT 351
Query 306 CATTCTCAGCTAGCAGCGTTCTCGCAAAATGCACTCACTCGAGG-TGGGAGAACAGTATG 364
|||||||||| ||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 352 CATTCTCAGCCAGCAGCGTTCTCGCAAAATGCGCTCACTCG-GGATGGGAGAACAGTATG 410
Query 365 AATTACGCAGCTTCGATATTCAGAGGCATTGATGATCCGTGTACCTTTGATTTCAATACA 424
|||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 411 AATTACGCAGCTTCCATATTCAGAGGCATAGATGATCCTTGTACCTTTGATTTCAATACA 470
Query 425 ATGATTAGAGGGTATGTTAATGAAATGAGTTTCGAGGTAGCATTGTGTTTTTACAATGAG 484
|||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 471 ATGATTAGAGGGTATGTTAACGTAATGAGTTTCGAGGAAGCATTGTGTTTTTACAATGAG 530
Query 485 ATGATGGAGAGAGGGATTGAGTCAGATAATTTCACGTACCCGTGTCTTCTCAAGGCTTGC 544
|||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 531 ATGATGCAGAGAGGGAATGAGCCAGATAATTTCACGTACCCGTGTCTTCTCAAGGCTTGC 590
Query 545 ACTCGTTTGAAGGCGATTCGAGAAGGGAAGCAGATTCATGGGCACGTGTTTAAGCTCGGT 604
|||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 591 ACTCGTTTGAAGTCAATTCGAGAAGGGAAGCAGATTCATGGGCAAGTGTTTAAGCTCGGT 650
Query 605 CTTGAAGCGGATGTGTTTGTTCAGAATAGTTTGATCAATATGTATGGAAGATGTGGAGAG 664
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 CTTGAAGCTGACGTGTTTGTTCAGAATAGTTTGATCAATATGTATGGAAGATGTGGAGAG 710
Query 665 ATGGAACTTTCTTCTACAGTTTTTGAGAAACTGGAATTTAAATCTGCTGCGTCGTGGAGC 724
||||||||||||||| | ||||||||||||||||||| |||| | |||||||||||||||
Sbjct 711 ATGGAACTTTCTTCTGCGGTTTTTGAGAAACTGGAATCTAAAACAGCTGCGTCGTGGAGC 770
Query 725 TCAATGGTTTCAGCTTGTGTAGGCATGGGATTGTGGAGCGAATGCTTGATGTTATTTCGT 784
|| ||||| || ||| ||| |||||||||| ||||||||||||||||| | |||| |||
Sbjct 771 TCGATGGTCTCTGCTCGTGCAGGCATGGGAATGTGGAGCGAATGCTTGTTACTATTCCGT 830
Query 785 GAAATGTGTAGAGAAACGAATTTGAAGGCTGAGGAAAGCGGAATGGTTAGTGCTCTCTCA 844
| ||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||| |
Sbjct 831 GGAATGTGTAGCGAAACGAATTTGAAGGCGGAAGAAAGTGGAATGGTTAGTGCTCTCTTA 890
Query 845 GCTTGTGCCAACACAGGTGCACTCAATCTAGGAATGAGCATCCATGGCTTCCTGTTGAGA 904
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 GCTTGTGCCAACACCGGTGCACTCAATCTAGGAATGAGCATCCATGGCTTCCTGTTGAGA 950
Query 905 AACATAAGCGAACTCAACATAATAGTCCAAACTTCACTTGTAGATATGTACGTTAAATGC 964
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 951 AACATAAGCGAACTCAACATAATAGTCCAAACTTCACTAGTAGATATGTACGTTAAATGC 1010
Query 965 GGGTG-TATAGACAAAGCGTTGCATATATTTCAGAAGATGGAAAAGAGGAATAATTTGAC 1023
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 GGGTGCT-TAGACAAAGCGTTGCATATATTTCAGAAGATGGAAAAGAGGAATAATTTGAC 1069
Query 1024 TTACAGTGCAATGATCTCAGGACTTGCGTTGCACGGAGAAGGAGAATCAGCTTTAAGAAT 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 TTACAGTGCAATGATCTCAGGACTTGCGTTGCACGGAGAAGGAGAATCAGCTTTAAGAAT 1129
Query 1084 GTTCTCTGAGATGATCAAAGAAGGCTTAGAACCAGATCATGTTGTGTATGTCAGTGTTCT 1143
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1130 GTTCTCTAAGATGATCAAAGAAGGTTTAGAACCAGATCATGTTGTGTATGTCAGTGTTCT 1189
Query 1144 CAATGCCTGTAGCCACTCTGGTCTTGTTAAAGAAGGTCGTCGAGTCTTCGAAGAAATGTT 1203
|||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1190 CAATGCATGTAGTCACTCTGGTCTTGTTAAAGAAGGTCGTCGAGTCTTCGCAGAAATGTT 1249
Query 1204 AAAGGAAGGTAAGGTGGAGCCAACGGCTGAGCATTATGGCTGTCTTGTAGATCTTCTGGG 1263
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1250 AAAGGAAGGTAAGGTGGAGCCAACGGCTGAGCATTACGGCTGTCTTGTAGATCTTCTGGG 1309
Query 1264 AAGAGCCGGATTGCTCGAGGAAGCATTGGAGACTATCCAAAGCATGTCC-ATTGAGCAAA 1322
||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||
Sbjct 1310 AAGAGCCGGATTGCTCGAGGAAGCATTGGAGACTATCCAAAGCAT-ACCAATTGAGAAAA 1368
Query 1323 ATGATGTTGTCTGGAGAAGCTTCTTAAGCCAATGCAGAGTTCATCAGAACATTGAGCTAG 1382
|||||||| ||||||||| ||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1369 ATGATGTTATCTGGAGAACCTTCTTAAGTCAATGCAGAGTTCGTCAGAACATTGAGCTAG 1428
Query 1383 GTCAAATAGCAGCTCAAGAACTGCTTAAGCTAAGCTCACACAACCCAGGTGACTATTTGC 1442
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 GCCAAATAGCAGCTCAAGAACTGCTTAAGCTAAGCTCACACAACCCAGGTGACTATTTGC 1488
Query 1443 TAATCTCTAACATGTATTCACAAGCTCAAATGTGGGATGATGTAGCCAGAGCTCGAACAG 1502
| ||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1489 TGATCTCTAACTTGTATTCACAAGGTCAAATGTGGGATGATGTAGCCAGAACTCGAACAG 1548
Query 1503 AAATCGCTATCAAGGGTTTGAAGCAAACCCCGGGTTTTAGTATTGTCGAGGTAAAAGGTA 1562
|||||||||||||||||||||| ||||||||||||||||| || |||||| |||||||||
Sbjct 1549 AAATCGCTATCAAGGGTTTGAAACAAACCCCGGGTTTTAGCATCGTCGAGCTAAAAGGTA 1608
Query 1563 AAACCCACAGGTTTGTTTCACAAGATCGATCGCACCCACAATGCAAAGAAATCTACAAGA 1622
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1609 AAACCCACAGGTTCGTTTCACAAGATCGATCGCACCCAAAATGCAAAGAAATCTACAAGA 1668
Query 1623 TGCTACACCAGATGGAATGGCAACTAAAGTTCGAAGGATATTCACCAGACTTGACACAGA 1682
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1669 TGCTACACCAGATGGAATGGCAACTAAAATTCGAAGGATATTCACCAGACTTGACACAGA 1728
Query 1683 TATTGCTAAACGTAGATGAAGAAGAAAAGAAAGAGAGACTAAAAGGACACAGCCAAAAGG 1742
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1729 TATTGCTAAACGTAGATGAAGAAGAAAAGAAAGAGAGATTAAAAGGACACAGCCAAAAGG 1788
Query 1743 TGGCTATTGCCTTTGCACTATTGTATACACCTCCAGGGTCTATCATTAAAATAGCTAGAA 1802
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1789 TGGCTATTGCCTTTGGACTATTGTATACACCTCCAGGGTCTATCATTAAAATAGCTAGAA 1848
Query 1803 ACCTGAGGATGTGTAGTGACTGTCACACATATACAAAGAAAATCTCCATGATCTACGAAA 1862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1849 ACCTGAGGATGTGTAGTGACTGTCACACATATACAAAGAAAATCTCCATGATCTACGAAA 1908
Query 1863 GAGAGATTGTTGTAAGAGACAGAAATAGGTTTCACCTGTTTAAAGGTGGAACTTGTTCTT 1922
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1909 GAGAGATTGTTGTAAGAGACAGAAACAGGTTTCACCTGTTTAAAGGTGGAACTTGTTCTT 1968
Query 1923 GTAAAGATTATTGGTAGGTTTAAATC 1948
||||||||||||||||||||||||||
Sbjct 1969 GTAAAGATTATTGGTAGGTTTAAATC 1994
Score = 93.5 bits (50), Expect = 7e-18
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 1 ACTTGTGGCTCTTATTTTCCATGAAAATCTCGAGGGATGAGATTCAAAACCCCTCA 56
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 11 ACTTGTGGCTCATATTTTCCATGAAAATCTCGAGGGATGAGATTCAAAAACCCTCA 66
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96485447490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5