BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473382
Length=2921
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31930.1 | Symbols: XLG3 | extra-large GTP-binding protein 3... 4309 0.0
> AT1G31930.1 | Symbols: XLG3 | extra-large GTP-binding protein
3 | chr1:11465049-11469165 FORWARD LENGTH=3067
Length=3067
Score = 4309 bits (2333), Expect = 0.0
Identities = 2771/2972 (93%), Gaps = 72/2972 (2%)
Strand=Plus/Plus
Query 1 CTCAGAGAGAAAAAACAAATATCACAGCTACCAAAACAGATTCCTCTTACTTCTTCTTCT 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 CTCAGAGAGATAAAACAAATATCACAGCTACCAAAACAGATTCCTCTTACTTCTTCTTCT 80
Query 61 TCTCCTCCTCTGAGTTCGTCTTCTCAGATTCAGCTTCGACTTTTTTGTTGTTTCTTCACT 120
||| | |||| ||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 81 TCT--TGTTCTGTGTTCGTCTTCTCAGATTCAGCTTCGACTTTTTTTTTGTTTC-TCACT 137
Query 121 TTTATACAAAAGGTTTCAA----------TG---C-T-C------GCCGGCTATTTGACT 159
||||||||||||||||||| || | | | |||||||||||||||
Sbjct 138 TTTATACAAAAGGTTTCAATGCTCTCTCGTGAAACGTCCATATATGCCGGCTATTTGACT 197
Query 160 TTGA-TTTTATTGATATG-----AC-AAAGCCAATTTGAGGAAATGGTGATGTGATTTGT 212
|||| ||||||| ||||| || ||||||||||||||||||||||||||||| || |
Sbjct 198 TTGATTTTTATTCATATGACAAAACTAAAGCCAATTTGAGGAAATGGTGATGTGA-TT-T 255
Query 213 GtttttttGGGTTTCATCTTGTAA-ATTGT-TATTGGTGGTG-GC-TCTTTTGATTTTGG 268
| | |||| |||||||||| || | ||||||||||| || |||||||| || |
Sbjct 256 G------T-GGTTGCATCTTGTAATTTTCTCTATTGGTGGTGTGCTTCTTTTGA--TT-G 305
Query 269 ATTTTGTAAAAACATGGAGAAGAAAGATGAAGGTGAAAGCTGGAAAGAAATGGTGAGAAA 328
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 --TGTAAAAAAACATGGAGAAGAAAGATGAAGGTGAAAGCTGGAAAGAAATGGTGAGAAA 363
Query 329 GATGCTTCCTCCTGGAGCTCCTTTACCGGAAGATCCATCGGAATTTGATTACTCCATTGC 388
||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 364 GATGCTTCCTCCTGGAGCTCCTTTACCTGAAGATCCATCGGAATTTGATTACTCTATAGC 423
Query 389 TTTAGAGTACACTGGTCCTCCTCCGGTTCATGATATCCCTAGAGTTTCACCTGTTGATGT 448
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 424 TTTAGAGTACACTGGTCCTCCTCCTGTTCATGATATCCCTAGAGTTTCACCTGTTGATGT 483
Query 449 TAATCCTCGTGTGAACAATCCCATTCCATTACCGGTCTCTCGTATAGCGGGAGGAGTCAC 508
||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 484 TAATCCTCGTGTGAATAATCCGATACCATTACCGGTCTCTCGTATAGCGGGAGGAGTCAC 543
Query 509 AAGCTCTTCGGGAGGTTCGCCAGCTAGCTCTGAGTCTGTGGTCTCTGTGTTGCATAATAA 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 AAGCTCTTCGGGAGGTTCGCCAGCTAGCTCTGAGTCTGTGGTCTCTGTGTTGCATAATAA 603
Query 569 CCCTGAATCATCATCTGGCTCAGCTTCTGTATCACCAGTTTCTGGTCATAGGCAAAATGG 628
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 604 CCCTGAATCATCATCTGGCTCAGCTTCTGTATCACCAGTTTCTGGTCATAGACAAAATGG 663
Query 629 GAATCAGATTCGGAGACCGGTTGTGAAATTCAAACCTGTTGATGATCATGATAGGATTGA 688
||||||| |||| |||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct 664 GAATCAGGTTCGTAGACCGGTTGTGAAATTCAAACCTGTCGATGATCATGATCGAATTGA 723
Query 689 AGGTagagaagctgcagaggaggag-a-a-caatgtggaggcagagacagagagggagag 745
||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 724 AGGTAGAGAAGCTGCAGAGGAGGAGGATAACAATGTGGAGGCAGAGACAGAGAGGGAGAG 783
Query 746 gaaggTCCATGAGTGTACCGCAAGTACgaagagaaggaagaagaataagaagagagagTG 805
|||||| ||||||||||| ||||||||||||||| |||||||||| ||||| || |||||
Sbjct 784 GAAGGTTCATGAGTGTACTGCAAGTACGAAGAGACGGAAGAAGAAGAAGAAAAGTGAGTG 843
Query 806 TTCTAGATGTGGAAAAGCGAAATGGGAAAATAAGGAGACTTGTATTGTTTGTGATGAAAA 865
|| | |||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 844 TTATCGATGCGGAAAAGCGAAATGGGAAAATAAGGAGACTTGCATTGTGTGTGATGAAAA 903
Query 866 GTATTGTGGAAACTGTGTGCTTAGAGCGATGGGTTCGATGCCTGAAGGAAGAAAGTGTGT 925
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 904 GTATTGTGGAAACTGTGTGCTTAGAGCAATGGGTTCGATGCCTGAAGGAAGAAAGTGTGT 963
Query 926 GAGTTGTATTGGTCAAGCTATCGATGAATCGAAACGGTCTAAATTAGGGAAGCATTCGCG 985
|||||| || ||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 964 GAGTTGCATCGGTCAAGCTATTGACGAATCGAAACGGTCTAAATTAGGGAAGCATTCTCG 1023
Query 986 GGTATTGTCGCGGTTGCTTAGTCCTTTAGAAGTTAAACAGATCATGAAGGCGGAAAAAGA 1045
|||||||||||||||||||||||| || |||||||||||||| |||||||||||||| ||
Sbjct 1024 GGTATTGTCGCGGTTGCTTAGTCCATTGGAAGTTAAACAGATAATGAAGGCGGAAAAGGA 1083
Query 1046 ATGTACTGCTAATCAGCTGAGACCTGAGCAGTTGATTGTGAATGGGTACCCGTTAAAGCC 1105
|||||||||||||||||||||||||||||| ||||||||||||| || || ||||||||
Sbjct 1084 GTGTACTGCTAATCAGCTGAGACCTGAGCAGCTGATTGTGAATGGTTATCCATTAAAGCC 1143
Query 1106 CGAGGAAATGGCTGAGTTGCTCAACTGTCTTTTACCACCTCAGAAGTTGAAACCCGGTAG 1165
|||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1144 TGAGGAAATGGCTGACTTGCTCAACTGTCTTCTACCGCCTCAGAAGTTGAAACCCGGTAG 1203
Query 1166 ATATTGGTACGACAAAGAATCTGGTCTATGGGGCAAGGAACGAGAGAAACCAGATAGAGT 1225
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1204 ATATTGGTACGACAAAGAATCTGGTCTATGGGGCAAGGAAGGAGAGAAACCAGATAGAGT 1263
Query 1226 CATTAGCTCAAACTTGAACTTCACGGGGAAGCTGTCCCCGGACGCAAGCAGTGGAAACAC 1285
||||||||| |||||||||||||| |||||||||||||||||||| |||| ||| |||||
Sbjct 1264 CATTAGCTCGAACTTGAACTTCACCGGGAAGCTGTCCCCGGACGCGAGCAATGGGAACAC 1323
Query 1286 GGAAGTTTATATTAACGGTCGGGAGATCACAAAGCTTGAATTAAGGATTTTGAAGCTAGC 1345
||||||||||||||||||| ||||||||||||||||||| || |||||||| ||||||||
Sbjct 1324 GGAAGTTTATATTAACGGTAGGGAGATCACAAAGCTTGAGTTGAGGATTTTAAAGCTAGC 1383
Query 1346 AAATGTACAGTGTCCACGTGATACTCATTTTTGGGTATACGACGATGGGCGTTATGAGGA 1405
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1384 AAATGTACAGTGTCCACGTGATACTCATTTTTGGGTATATGACGATGGACGTTATGAGGA 1443
Query 1406 AGAAGGGCAGAATAATATTCGAGGAAACATTTGGGAGAAGGCATCTACGAGGTTCATGTG 1465
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 AGAAGGGCAGAATAATATCCGAGGAAACATTTGGGAGAAGGCATCTACGAGGTTCATGTG 1503
Query 1466 TGCGCTGTTTTCTTTACCTGTTCCTCACGGACAACCTCGTGGGATGGTGCAACCACCGAG 1525
||||||||||||||||||||||||||| ||||||||||| || | |||||||||| ||||
Sbjct 1504 TGCGCTGTTTTCTTTACCTGTTCCTCAAGGACAACCTCGCGGAACGGTGCAACCATCGAG 1563
Query 1526 TAATTATGCTACTGTTCCGAATTATATAGAGCATAAGAAGATTCAGAAGCTTCTACTTCT 1585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 TAATTATGCTACTGTTCCGAATTATATAGAGCATAAGAAGATTCAGAAGCTTCTACTTCT 1623
Query 1586 TGGTATCGAAGGGTCTGGAACTAGCACTATCTTCAAACAGGCCAAGTTTTTGTACGGAAA 1645
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1624 TGGTATTGAAGGTTCTGGAACTAGCACTATCTTCAAACAGGCCAAGTTTTTGTATGGAAA 1683
Query 1646 CAAGTTTTCAGAGGAAGAGCTTCAAGATATTAAGCTGATGGTACAAAGCAATATGTATAG 1705
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1684 CAAGTTTTCAGTGGAAGAGCTTCAAGATATTAAGCTGATGGTACAAAGCAATATGTATAG 1743
Query 1706 ATATCTCAGTATCCTACTTGATGGAAGAGAACGATTTGAAGAGGAAGCTTTATCGCATAC 1765
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1744 ATATCTCAGTATCTTACTCGATGGAAGAGAACGATTTGAAGAGGAAGCTTTATCGCATAC 1803
Query 1766 GAGAGGTTTAAACGCCGTTGAAGGAGATTCAGGAGGCGAGGAAATAAATGACGATGGAAC 1825
|||||||||||||||||||||||||||||||||||| || ||| ||| ||||| || ||
Sbjct 1804 GAGAGGTTTAAACGCCGTTGAAGGAGATTCAGGAGGGGAAGAAGCAAACGACGAGGGTAC 1863
Query 1826 TGTCACTACACCACAATGCGTTTATACCTTGAACCCGAGGTTGAAGCATTTTTCGGATTG 1885
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1864 TGTCACTACACCACAAAGCGTCTATACCTTGAACCCGAGGTTGAAGCATTTTTCGGATTG 1923
Query 1886 GCTTCTAGATATCATAGCAACTGGTGATCTCGATGCGTTTTTCCCAGCTGCAACACGTGA 1945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1924 GCTTCTAGATATCATAGCAACTGGTGATCTCGATGCGTTTTTCCCAGCTGCAACACGTGA 1983
Query 1946 ATATGCTCCGTTGGTTGAAGAAGTTTGGAAAGATCCGGCGATACAAGCAACATATAGACG 2005
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1984 ATATGCTCCATTGGTTGAAGAAGTTTGGAAAGATCCGGCTATACAAGCAACATATAGACG 2043
Query 2006 AAAAGATGAGCTGCATTTCCTTCCTGATGTCGCGGACTACTTCTTGAGCCGGGCCATGGA 2065
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 2044 AAAAGATGAGCTGCATTTCCTTCCTGATGTCGCGGAATACTTCTTAAGCCGGGCCATGGA 2103
Query 2066 AGTATCAAGCAACGAATATGAGCCTTCGGAGCGAGATATTGTGTATGCAGAAGGTGTTAC 2125
|||||| ||||| || |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 2104 AGTATCGAGCAATGAGTATGAGCCTTCGGAGCGAGATATTGTATACGCAGAAGGTGTTAC 2163
Query 2126 ACAAGGAAATGGATTAGCTTTCATGGAGTTTTCTCTCAGTGAACACAGTCCAATGTCTGA 2185
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 2164 ACAAGGAAATGGATTAGCTTTCATGGAGTTTTCTCTTAGTGATCACAGTCCAATGTCTGA 2223
Query 2186 ATCTTACCCCGAAAACCCCGACGCCTTATCATCTCCTCAACCAAAGTACCAGCTAATCCG 2245
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 2224 ATCTTACCCCGAAAACCCCGACGCCTTATCATCTCCTCAGCCAAAGTACCAGCTTATCCG 2283
Query 2246 CGTAAACGCAAAGGGGATGAACGATAGCTGCAAATGGGTAGAAATGTTTGAAGATGTACG 2305
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2284 CGTAAACGCAAAGGGAATGAACGATAGCTGCAAATGGGTAGAAATGTTTGAAGATGTACG 2343
Query 2306 AGCAGTCATCTTCTGCATCAGCTTAAGCGATTACGATCAGATCAGCATAACACCCGAAAG 2365
||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||
Sbjct 2344 AGCAGTCATCTTCTGCATCAGCTTAAGCGATTACGATCAAATCAACATCACACCCGAAAG 2403
Query 2366 CAGCGGAACAGTCCAGTTTCAGAACAAAATGATCCAAAGCAAAGAACTTTTCGAATCAAT 2425
||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2404 CAGTGGAACAGTCCAGTATCAGAACAAGATGATCCAAAGCAAAGAACTTTTCGAATCAAT 2463
Query 2426 GGTCAAGCACCCGTGTTTCAAAGACACGCCTTTTATCTTGATCCTAAACAAATACGACCA 2485
||| |||||||| |||||||||||||| ||||||||||||||||||||||| || || ||
Sbjct 2464 GGTTAAGCACCCCTGTTTCAAAGACACACCTTTTATCTTGATCCTAAACAAGTATGATCA 2523
Query 2486 GTTCGAGGAAAAGCTAAACCGTGCACCGTTAACATCATGCGACTGGTTCAGCGATTTCTG 2545
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 2524 GTTCGAAGAAAAGCTAAACCGTGCACCGTTAACATCTTGTGACTGGTTCAGCGATTTCTG 2583
Query 2546 CCCTGTGAGAACGAACAACAACGTGCAGTCACTAGCTTACCAAGCTTACTTCTACGTAGC 2605
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 2584 CCCCGTGAGAACGAACAACAACGTACAGTCACTAGCTTACCAAGCTTACTTCTATGTAGC 2643
Query 2606 AATGAAGTTCAAGCTTCTTTACTCGTCTATCACGGGTCAGAAACTGTTTGTGTGGCAAGC 2665
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2644 AATGAAGTTCAAGCTTCTTTACTTTTCTATCACGGGTCAGAAACTGTTTGTGTGGCAAGC 2703
Query 2666 TCGGGCTAGGGACCGCGCGAATGTGGATGAAGGGTTTAAGTATGTGAGAGAGGTTTTGAA 2725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2704 TCGGGCTAGGGACCGCGCGAATGTGGATGAAGGGTTTAAGTATGTGAGAGAGGTTTTGAA 2763
Query 2726 ATGGGATGAAGAGAAGGAAGAGAGTTACTTGAATGGTGGTGGAGAAGATTCCTTTTATAG 2785
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 2764 ATGGGATGAAGAGAAGGAAGAGAGTTACTTAAATGGTGGTGGAGAAGATTCGTTTTATAG 2823
Query 2786 TACGGATATGAGTTCGTCCCCATATAGACCGGAGGAGTAAAAGATT----------GA-- 2833
||||||||||||||| || ||||||||||||||||||||||| ||| ||
Sbjct 2824 TACGGATATGAGTTCATCACCATATAGACCGGAGGAGTAAAATATTAAATCTCCATGAGG 2883
Query 2834 AA-CTCTTGATTAA-TGATTTTTTGTTATTTTT-AACTTT-AAGTAGAGAGATAATTAAT 2889
|| ||||||||||| |||||| ||||||||||| |||||| ||||||||||||||| |
Sbjct 2884 AAACTCTTGATTAAATGATTTGTTGTTATTTTTTAACTTTTAAGTAGAGAGATAATG--T 2941
Query 2890 GTGTGAAGAAGAAAAATAAAATTATTTGTAAT 2921
| | ||||||||||||||||||||||||||||
Sbjct 2942 G-G-GAAGAAGAAAAATAAAATTATTTGTAAT 2971
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 145183133042
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5