BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473383

Length=437
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G31935.1 | Symbols:  | other RNA | chr1:11469482-11470010 FO...   368    2e-101


> AT1G31935.1 | Symbols:  | other RNA | chr1:11469482-11470010 
FORWARD LENGTH=529
Length=529

 Score =  368 bits (199),  Expect = 2e-101
 Identities = 253/277 (91%), Gaps = 11/277 (4%)
 Strand=Plus/Plus

Query  1    TAATGGGTCACTTGAAGCTCTCATCTTCTTTTACAAC-TCTTCTTCTTGTTGTTCTCTTG  59
            ||||||||||||||||||||||||||||   |||| |  | ||||||| |||||||||||
Sbjct  34   TAATGGGTCACTTGAAGCTCTCATCTTC---TACACCAAC-TCTTCTTATTGTTCTCTTG  89

Query  60   A-CCTGTCACCTTGTTCTGGTTTCTGCAGATTCTACAAGAACTCAAGTCAATTATGCGAT  118
            | ||| |||| || || ||||||||||||||| ||||||||||| |||||||||||||||
Sbjct  90   ATCCT-TCACTTTCTTATGGTTTCTGCAGATTTTACAAGAACTCGAGTCAATTATGCGAT  148

Query  119  GGACCGTGAAGCCACAGAAGGAAATCAGGCTGGAGGATTGC-ATCGAAGAGCAAGGATTA  177
            | |||| |||||||| ||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct  149  GAACCGCGAAGCCACCGAAGGAAATCAGGCTGGAGGATT-CAATCAAAGAGCAAGGATTA  207

Query  178  ACCACGGGAGCTATCGTGGGCCACGAAAACATCTAGTGAATCCCACAGTGGCAGATGTTT  237
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  208  ACCACGGGAGCTATCGTGGGCCACGAAAACATCTAGTGAATCCCACAGTGGTAGATGTTT  267

Query  238  ACACAGTTCCTGAATCTTCAGTTTGAAT-GAAAGATT  273
            |||||||||||||||||||||||||||| ||| ||||
Sbjct  268  ACACAGTTCCTGAATCTTCAGTTTGAATTGAA-GATT  303


 Score =  213 bits (115),  Expect = 1e-54
 Identities = 152/169 (90%), Gaps = 6/169 (4%)
 Strand=Plus/Plus

Query  275  TATGTAATTTCTTCATGTTGAAGT-AAAAACCAAAGTGGATAAACAAAGTTTCTTTGAGT  333
            |||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  354  TATGTATTTTCTTAATGTTGAAGTAAAAAACCAAAGTGGATAAACAAAGTTTCTTTGAGT  413

Query  334  TTAAAAAGTACTTTTCTCTCTTCCCATATA-A-TGCCGATAGTGAAATTTACTTGAGGAG  391
            ||  |||||||||||||||||| ||||||| | ||| |||||||||||||||||||| ||
Sbjct  414  TTGCAAAGTACTTTTCTCTCTTACCATATATAATGCTGATAGTGAAATTTACTTGAGAAG  473

Query  392  AACTCAATGCACAATAC--C-CTGCAAAAGTTAAAGCCTAAAGGGCAAA  437
            ||||| ||||| ||||   | |||||||||||||||||||||| |||||
Sbjct  474  AACTCGATGCATAATAATACACTGCAAAAGTTAAAGCCTAAAGAGCAAA  522



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20760580337


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5