BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473384
Length=842
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31940.1 | Symbols: | unknown protein; LOCATED IN: plasma m... 1014 0.0
> AT1G31940.1 | Symbols: | unknown protein; LOCATED IN: plasma
membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING:
13 growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G35585.1); Has 67 Blast hits
to 67 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:11470056-11471340 REVERSE
LENGTH=900
Length=900
Score = 1014 bits (549), Expect = 0.0
Identities = 648/696 (93%), Gaps = 6/696 (1%)
Strand=Plus/Plus
Query 152 ATGGTTGGTATATTTTCAAGATTCTCTGTTGGTAGAAGCAGC-CATCGACGAACACAAAG 210
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 187 ATGGTTGGTATATTTTCAAGATTCTCTGTTGGTAGAAGCA-CTCATCGACGAACACAAAG 245
Query 211 TGCAATCGATGATAAGGAAGTGTTGGCTCCAAATTCTGATGTTGTTGCAGCAACTACCAC 270
||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct 246 TGCAATCGATGATAAGGAAGTATTGGCTCCAAATTCTGATGTTATTGCAGCAACCACCAC 305
Query 271 AACTGCAACAACTGCTACTCATGGGATTGAAGTAGCTACAGAGTTTAAACCGGTGGAACA 330
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 AACTGCAACTACTGCTACTCATGGGATTGAAGTAGCTACAGAGTTTAAACCGGTGGAACA 365
Query 331 TCCGGTCGAGCCTTTGGATAACGATTTACCGATTCAGTGTCCATTGCCTGAACCATCCAT 390
|||||||||||| || || |||||| ||||||||||||||||||| ||||||||||||||
Sbjct 366 TCCGGTCGAGCCGTTAGACAACGATCTACCGATTCAGTGTCCATTACCTGAACCATCCAT 425
Query 391 TCTTAATGATGGAAGAATCTGGAAGGAGAGAGTATCGGCGTCTATGATGAGAAAAGGTGA 450
||| |||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 426 TCTAAATGATGGGAGAATCTGGAAGGAGAGAGTATCAGCGTCTATGAGGAGAAAAGGTGA 485
Query 451 TTCGCAGATTGCGAAAGATGAGGCTGCTTCTGAGTCTGATGGATCCGCACCAAAACCGCC 510
|| |||||||| |||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 486 TTTGCAGATTGTGAAAGATGAGGCTGCTTCTGAGTCTGATGGCTCAGCACCGAAACCGCC 545
Query 511 TCGCCCGCCTCTGCCAAACCGTTCGATCTTGCCATCACTTAGTGCCCCTGAACACAACTT 570
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 546 TCGCCCGCCTCAGCCAAATCGTTCGATCTTGCCATCACTTAGTGCCCCTGAACACAACTT 605
Query 571 GCTAAATCTACTAGAAGAATGCAGCGCGATGCCGCCGGTAACATCTAAGAATGGATGAAC 630
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 606 GCTAAATCTACTAGAAGAATGCAATGCGATGCCACCGGTAACATCTAAGAATGGATGAAC 665
Query 631 AAAGTTCCTTAAACTCGATATATATTACACCGATACAAGCTTGTTCCTCAAAACAACTCT 690
|||||| |||||||||||||| ||| ||||||||||||| |||||||| | ||| |||||
Sbjct 666 AAAGTTGCTTAAACTCGATATTTATCACACCGATACAAGATTGTTCCTTACAACCACTCT 725
Query 691 TGAATCTCTGTTTTTCATTGTTTACGATTTT-ACTTATGTGTGTGCCAGAACAAAACTAA 749
|||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 726 CGAATCTTTGTTTTTCGTTGTTTACGATTTTTACTTATGTGTGTGCCAGAACAAAACCAA 785
Query 750 ATCATAGTGTATGTtatatatattatataGGCAACTAAGGTTCATTAAGCTTATGCTCTA 809
|||||||||||||||||||| |||||| |||||||||| |||||||||||| |||||||
Sbjct 786 ATCATAGTGTATGTTATATAGATTATACAGGCAACTAAAATTCATTAAGCTTCTGCTCTA 845
Query 810 TATATCTCAACA-C-CGA-TATTCTACAATGGAAGT 842
| || ||||||| | | | |||||||||||||||||
Sbjct 846 TGTACCTCAACAACACCAATATTCTACAATGGAAGT 881
Score = 132 bits (71), Expect = 6e-30
Identities = 123/145 (85%), Gaps = 15/145 (10%)
Strand=Plus/Plus
Query 1 AAACCAAAAAGCATTTATCATCCATTCATTCACCAAGTTCCTTTGAAGATATAAAGCAA- 59
||| |||||||||||||||||||||||||| | | || || |||||||||||||
Sbjct 1 AAATCAAAAAGCATTTATCATCCATTCATT---C-A---CC--TGGAGATATAAAGCAAC 51
Query 60 CGT-TC-TTTT-TAAGTGGTTGAAGATAAATTTCTC-TTT-TGTTTCTTCGTCTTCTTCA 114
| | || |||| ||||||| | ||| |||||||||| ||| |||||||||||||||||||
Sbjct 52 CTTCTCTTTTTCTAAGTGGCTCAAGTTAAATTTCTCTTTTGTGTTTCTTCGTCTTCTTCA 111
Query 115 TACAAAGTCAAGAATCAAAATCAAG 139
|||||||||||||||||||| ||||
Sbjct 112 TACAAAGTCAAGAATCAAAACCAAG 136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41041298099
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5