BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473386
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32030.1 | Symbols: | Domain of unknown function (DUF313) ... 1227 0.0
> AT1G32030.1 | Symbols: | Domain of unknown function (DUF313)
| chr1:11514594-11515595 FORWARD LENGTH=1002
Length=1002
Score = 1227 bits (664), Expect = 0.0
Identities = 905/1013 (89%), Gaps = 49/1013 (5%)
Strand=Plus/Plus
Query 1 ATGCCTACGTATTACAATGATCATCTCGCAGCTGCGGAGAAGGACATAAGCTCGAGTAAA 60
||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGTCTACGTATTATAATGATCATCTCGCGGCTGCGGAGAAGGACATAAGCTCGAGTAAT 60
Query 61 TTCTGTAACTTGGTGGATGCTTCGGTCATGTTATACGAAGAAAAACACCGTAAACTTCTT 120
|||||||| || ||||||||||| || ||||||||||| ||| |||||||| | ||||||
Sbjct 61 TTCTGTAATTTAGTGGATGCTTCCGTTATGTTATACGACGAAGAACACCGTGATCTTCTT 120
Query 121 CCAAAGAAAGTAAAATCCAGAGGCCACGCgaagaagaagaagaaacaagaaaaagagagt 180
|||||||||||||| |||||| |||| |||||| | | |||||||||||||||||||||
Sbjct 121 CCAAAGAAAGTAAACTCCAGATGCCAAGCGAAG-A-CA-AAGAAACAAGAAAAAGAGAGT 177
Query 181 gacaagagaTTCTTCCATCTCTTCCCTAAAAGAAGAAGAACTTCGGTTGTTACTGTAAGA 240
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 178 GACAAGAGATTCTTTGATCTCTTCCCTAAAAAAAGAAGAACTTCGGTTGTTACTGTAAGA 237
Query 241 AACCCTGAACAAAACCAACAAAACCTTGATAGGGTTTCTACTTCTTCATCCCTCCTCGAC 300
||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct 238 AACCCTGAACAAAACCAACAAAATCTTCATAGGGTTTCTACTTCTTCATCGCTCCTCGAC 297
Query 301 CTTAACACGATCCCCGATGATTCTTCTGACCCACGTAACCCACTTCAAGGGCTTT---CT 357
|||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||
Sbjct 298 CTTAACACGATCCCCGGTGATTCTTCTGACCCACGTAACGAACTTCAAGGGCTTTTATCT 357
Query 358 TCTTCATCATCATCGTGT-TTGGGAGCTGATAAC-AAGAGGAAAACCCCACAAAACCCTC 415
||||| |||||||||| | |||| || | || | || |||||||||||||||||| ||
Sbjct 358 TCTTCTTCATCATCGTTTCTTGG-AGAT--TA-CGAA-AGGAAAACCCCACAAAACGCTT 412
Query 416 CTTCTTCTTCAACTTTACTTG-TGGAGTACAACACGGAGATGACAAACCCACCAAACCCT 474
||||||||||||||||||||| || |||||||||| |||||| |||||||||||||||||
Sbjct 413 CTTCTTCTTCAACTTTACTTGCTG-AGTACAACACCGAGATGGCAAACCCACCAAACCCT 471
Query 475 AAATCTGAGACAA-CC--AAGA-AA-GCAAAG-G-T--TG--C----------------T 507
|| |||||||||| || |||| || ||| || | | || | |
Sbjct 472 AATTCTGAGACAAGCCTCAAGAGAAAGCATAGTGATAGTGAACCCAAGAAAGCAAAGACT 531
Query 508 CCTTATTCATGGATAGGGA-AGGAGGCGCCGGAGTGGCTGGTCAAGATGATGGGAACAAT 566
||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 532 CCTTATTCATGGAAAGGGAGAG-AGGCGCCGGAGTGGCTGGTCAAGATGATGGGAACAAT 590
Query 567 GCAGGGAAGCGAAGGCCCGAGGCTCATCTATCAGAAGACTCTGACCGAAACAGATATCAA 626
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||
Sbjct 591 GCAGGGAAGCGAAGGCCCGAGGCTAATCTATGAGAAGACTCTGACCGAAACAGATGTCAA 650
Query 627 ACCAGATC-AGAGCCGTCTCTTAGTGCCTTTCAACACCCTAATTTGTAACGACTTCTTGA 685
||||| || |||||||||||||| |||||||||||||||||||| |||||||||| ||||
Sbjct 651 ACCAG-TCCAGAGCCGTCTCTTAATGCCTTTCAACACCCTAATTCGTAACGACTTTTTGA 709
Query 686 CGCCTGTTGAGTCGAGAATCCTACTAGAA---GAAGATGACACCAAGGGAGTTGGAGCGA 742
|||||||||||| |||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 710 CGCCTGTTGAGTTGAGAATCCTACTAGAATTAGAAGATGACACGGATGGAGTTGGAGCGA 769
Query 743 CTCTAGTGGATCCTTGGGAGGTAAAGTGGGGTGTGATTTTGAAGAAACGGAAGATGAAGA 802
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 770 CTCTAGTGGATCCATGGGAGGTAAAGTGGGGTGTGATTTTGAAGAAACGGGAGATGAAGA 829
Query 803 AAAATTCAGGGAAAGTAACCTTGAATTACGCTATTATCTGCGGGTGGAACGAGATCGTTG 862
|| |||||||||||| || |||||| |||||||| || |||||||||||||| |||||||
Sbjct 830 AATATTCAGGGAAAGGAAGCTTGAACTACGCTATAATATGCGGGTGGAACGATATCGTTG 889
Query 863 AGGCTAACGTATTGGAAGAAGGCGATGACATCAGTATTTGGTCTTTCAGGCGGGGTAGAA 922
||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||
Sbjct 890 AGGCTAACGTATTGGAAAAAGACGATGACATCAGTATTTGGTCTTTCAGGCGAGGTAGAA 949
Query 923 ATGGAATCCTTTGCTTTGCCCTTGTTCTTCCTCCTCCTCCGGACATGGCATAG 975
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 950 ATGGAATCCTTTCCTTTGCCCTTGTTCTTCCTCCTCCTCCTGACATGGCATAG 1002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5