BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473387
Length=1156
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32050.1 | Symbols: | SCAMP family protein | chr1:11528445-... 1581 0.0
> AT1G32050.1 | Symbols: | SCAMP family protein | chr1:11528445-11531281
FORWARD LENGTH=1273
Length=1273
Score = 1581 bits (856), Expect = 0.0
Identities = 957/1005 (95%), Gaps = 9/1005 (1%)
Strand=Plus/Plus
Query 1 TGGGAGagaaaaagaagaaaaactaaaaagaGTCCAACCACATCAGTTTGCTTTCACAGT 60
||||||||||||||||| || ||| |||||||||||| |||||||||||||||||||
Sbjct 1 TGGGAGAGAAAAAGAAG---AA--AAAGAGAGTCCAACCATATCAGTTTGCTTTCACAGT 55
Query 61 CGAGTCGGTGCGctc-tcttttttcttctctctttc--ttcAACCTCTCGCCGGATCTCG 117
|||||||||| ||| | |||||||||||||||||| ||| ||||||||||||||| ||
Sbjct 56 GGAGTCGGTGCTCTCTTTTTTTTTCTTCTCTCTTTCTTTTC-ACCTCTCGCCGGATCCCG 114
Query 118 GCGATCTTATCGGAGACAAATCTATCAGTATCGTGAATCTAGGATCTCTAACCAACGATG 177
|||||||||| |||| |||||||||||||||||| | ||||||||||||||| ||| |||
Sbjct 115 GCGATCTTATAGGAGGCAAATCTATCAGTATCGTTATTCTAGGATCTCTAACAAACAATG 174
Query 178 AATCGCCACCACGATCCCAATCCTTTCGATGAGGAAGAAGAAATCGTCAATCCTTTTTCG 237
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 175 AATCGCCACCACGATCCCAATCCTTTCGATGAGGACGAAGAAATCGTCAATCCTTTTTCG 234
Query 238 AAAGGTGGTGGAAGAGTTCCTGCTGCATCTAGACCAGTTGAATTTGGCCAAAGCCTTGAT 297
|||||||||||||| ||||||||||||||||| |||||||||| ||| ||||||||||||
Sbjct 235 AAAGGTGGTGGAAGGGTTCCTGCTGCATCTAGGCCAGTTGAATATGGTCAAAGCCTTGAT 294
Query 298 GCTACTGTTGATATTCCATTGGATAATATGAATGACTCGTCACAGAAACAGAGGAAGCTT 357
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 295 GCTACTGTTGATATTCCATTGGATAATATGAATGACTCTTCACAGAAACAGAGAAAGCTT 354
Query 358 GCTGACTGGGAAGCTGAGCTTAGGAAGAAAGAAATGGATATTAAGCGAAGAGAGGATGCT 417
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 355 GCTGACTGGGAAGCTGAGCTCAGGAAGAAAGAAATGGATATAAAGCGAAGAGAGGAAGCT 414
Query 418 ATTGCTAAATCTGGTGTGCAGATAGATGATAAAAACTGGCCACCGTTTTTCCCCATCATA 477
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 415 ATTGCTAAATTTGGTGTGCAGATAGATGATAAAAACTGGCCACCGTTTTTCCCAATCATA 474
Query 478 CACCATGACATTGCTAAAGAGATACCAGTTCATGCACAAAAGCTGCAGTATCTGGCTTTC 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 CACCATGACATTGCTAAAGAGATACCAGTTCATGCACAAAAGCTGCAGTATCTGGCTTTC 534
Query 538 GCTAGCTGGTTAGGTATAGTTCTGTGTCTGGTATTCAATGTCATTGCAACGATGGTCTGC 597
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GCTAGTTGGTTAGGTATCGTTCTGTGTCTGGTATTCAATGTCATTGCAACGATGGTCTGC 594
Query 598 TGGATTAAAGGCGGAGGTGTTAAAATCTTCTTCCTGGCCACAATATATGCGTTGATCGGA 657
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 595 TGGATTAAAGGCGGAGGTGTTAAAATCTTTTTCCTGGCCACAATATATGCATTGATCGGA 654
Query 658 TGTCCACTTTCTTACGTACTATGGTACAGGCCACTCTACCGAGCCATGAGGACTGACAGC 717
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TGTCCACTCTCTTATGTACTATGGTACAGGCCACTCTACCGAGCCATGAGGACTGACAGT 714
Query 718 GCTTTGAAGTTTGGTTGGTTTTTCTTCACCTACCTGATTCACATTGGCTTCTGCATTGTT 777
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 715 GCTTTGAAGTTTGGTTGGTTTTTCTTCACCTACTTGATTCACATTGGCTTCTGCATCGTT 774
Query 778 GCCGCCATTGCCCCTCCGATCTTTTTCCATGGAAAATCATTAACGGGTGTGCTTGCAGCA 837
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GCTGCCATCGCCCCTCCAATCTTTTTCCATGGAAAATCATTAACGGGTGTGCTTGCAGCA 834
Query 838 ATTGATGTCATCTCAGACAGTTTATTAGCCGGGATCTTCTACTTTATCGGATTCGGTCTC 897
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 835 ATTGATGTCATCTCAGACAGTTTATTAGCTGGGATCTTCTACTTTATCGGATTCGGTCTC 894
Query 898 TTCTGCTTGGAGTCACTTCTGAGTCTATGGGTTCTTCAGAAAATTTACCTCTACTTTAGG 957
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TTCTGCTTGGAGTCACTGCTGAGTCTATGGGTTCTTCAGAAAATTTACCTCTACTTTAGG 954
Query 958 GGAAACAAGTGAAAAGGAGATAGAGAGGAAGATGATGGTAATTTT 1002
|||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 955 GGAAACAAGTGAAAAGGAGATAAAGAGGAAGATGATGGTAATTTT 999
Score = 122 bits (66), Expect = 5e-27
Identities = 81/88 (92%), Gaps = 1/88 (1%)
Strand=Plus/Plus
Query 1048 TTGTTCGGCCATTTCTATAGGtttttttACTCTGTTCTTCTCTGGTCTGTAATATACCAA 1107
|||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||
Sbjct 1122 TTGTTCGGCCATTTCTTTATG-TTTTTTACTCTGTTCTTCTCTGGTCTGTAATATACCAA 1180
Query 1108 TATCGTCTCTGAACGTTTGGGAGTTTTT 1135
|||||||||| | | ||||||| |||||
Sbjct 1181 TATCGTCTCTTAGCTTTTGGGATTTTTT 1208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56726615850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5