BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473390
Length=881
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32070.2 | Symbols: ATNSI, NSI | nuclear shuttle interacting... 1358 0.0
> AT1G32070.2 | Symbols: ATNSI, NSI | nuclear shuttle interacting
| chr1:11534684-11536338 REVERSE LENGTH=993
Length=993
Score = 1358 bits (735), Expect = 0.0
Identities = 838/887 (94%), Gaps = 10/887 (1%)
Strand=Plus/Plus
Query 1 ATTTCTTCTACTCTCAACTCTCAACCACAAAACC-a-aaaaaaTGCTACTAATTCCAATt 58
||||||||||||||||| ||||||||||| |||| | |||||||||||||||| ||||||
Sbjct 8 ATTTCTTCTACTCTCAAGTCTCAACCACATAACCAATAAAAAATGCTACTAATCCCAATT 67
Query 59 tcttcttcttcttcttcctcttcctctatccttcctcctAACTCATATTCATCGAATCAT 118
||||||||||| ||||| || | | || || ||||||||| |||||| |||||||||||
Sbjct 68 TCTTCTTCTTCGTCTTCGTC-T-AT-TAGCCCTCCTCCTAATTCATATCCATCGAATCAT 124
Query 119 CACTCTCTGTTTTTCTCCAATCTCACATACCCGATTCCACATGGAAGCAGAAAGTTGAAG 178
|||||||||||||||||||||||||||| ||| |||| ||||||||| ||||||||||||
Sbjct 125 CACTCTCTGTTTTTCTCCAATCTCACATTCCCAATTCAACATGGAAGTAGAAAGTTGAAG 184
Query 179 ACTTTGCGACTCAGAGCCAATTTCTGGGAGTCAATTCGATCTGGGTTTGTGAAGAATAAT 238
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 185 ACTTTGCGACTCAGAGCCAATTTCTGGGAGTCAATCCGATCTGGGTTTGTGAAGAATAAT 244
Query 239 AATAGTACCCAACTTGTTGAACCACCTTCTATAGT---TGAAGAAGAAGAAGAGACTGAA 295
|||||||| |||||||| ||||||||||||||||| ||| |||||||||||||||||
Sbjct 245 AATAGTACGCAACTTGTGGAACCACCTTCTATAGTCAATGATGAAGAAGAAGAGACTGAG 304
Query 296 CCATTATTGCCTGTGGAATTTGCTTTAGTTGAGAGAAATCTTGAAGATGGTTTAATTGAA 355
||||| || |||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 305 CCATTGTTACCTGTGGAATTTACTTTAGTTGAGAGAAATCTTGAAGATGGTTTAGTTGAA 364
Query 356 GAGATCATATTTTCTTCTGGTGGTGAGATTGATGTTTATGATCTTCAAGGTCTTTGTGAC 415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 GAGATCATATTTTCTTCTGGTGGTGAGATTGATGTTTATGATCTTCAAGGTCTTTGTGAT 424
Query 416 AAGGTGGGATGGCCACGGAGACCGTTAGTGAAACTAGCTGCAGCTTTGAAGAATAGTTAT 475
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 425 AAGGTGGGATGGCCAAGGAGACCGTTAGTGAAACTAGCTGCTGCTTTGAAGAATAGTTAT 484
Query 476 ATGGTTGCTACTTTGCATTCTGTAATGAAGTCATCATCAGATTCAGATTCATCAGAAGGC 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 ATGGTTGCTACTTTGCATTCTGTAATGAAGTCATCATCAGATTCAGATTCATCAGAAGGC 544
Query 536 GGTAATGGGGAGAAGCAGCAGGAGAAGAAGCTTATTGGTATGGCACGTGCAACGTCGGAT 595
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 545 GGGGATGGGGAGAAGCAGCAGGAGAAGAAGCTTATTGGTATGGCACGTGCGACGTCGGAT 604
Query 596 CATGCCTTTAATGCTACAATTTGGGATGTTCTTGTTGATCCTGAATATCAGGGTCAAGGG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 CATGCCTTTAATGCTACAATTTGGGATGTTCTTGTTGATCCTGAATATCAGGGTCAAGGG 664
Query 656 CTAGGTAAAGCGCTTGTTGAAAAACTTGTAAGGGCTCTTCTTCAGAGAGATATTGGTAAT 715
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 665 CTAGGTAAAGCTCTTGTTGAAAAACTTGTAAGGGCTCTTCTTCAAAGAGATATTGGTAAC 724
Query 716 ATATCTCTATTTGCAGATAGTCAAGTTGTGGATTTCTATCAGAACTTGGGGTTTGAGGCT 775
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 ATATCTCTGTTTGCAGATAGTCAAGTTGTGGATTTCTATCAGAACTTGGGGTTTGAGGCT 784
Query 776 GATCCAGAAGGCATCAAAGGCATGTTTTGGTACCCAAAGTAGTTACTTGGTGATTACAAG 835
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 785 GATCCAGAAGGCATCAAAGGCATGTTTTGGTACCCAAAGTAGT-ACTTGGTGATTGCAAG 843
Query 836 AGAATGGGATTATTATTTGTTTGTATA-TTTCTGTGCTTTCTTATAT 881
| ||||||||| ||| |||| |||||| ||||| |||||||||||||
Sbjct 844 AAAATGGGATTGTTACTTGTATGTATAATTTCTTTGCTTTCTTATAT 890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43000429832
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5