BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473391
Length=1795
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32080.1 | Symbols: | membrane protein, putative | chr1:115... 2789 0.0
> AT1G32080.1 | Symbols: | membrane protein, putative | chr1:11537342-11539800
REVERSE LENGTH=1813
Length=1813
Score = 2789 bits (1510), Expect = 0.0
Identities = 1716/1814 (95%), Gaps = 20/1814 (1%)
Strand=Plus/Plus
Query 1 GTGCCGTCTCTCAGAATCGTATCCACGTCGTCGTCTCCATACCCATGGCTACTCTTTTAG 60
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTGCCGTCTCTTAGAATCACATCCACGTCGTCGTCTCCATACCCATGGCTACTCTTTTAG 60
Query 61 CCACTCCTCTCTTCTCTCCTTTAGCTTTTTCTCCGGCAAGGAACCACCTTTCTTGCTCCA 120
|||||||| |||||||||||||||||| |||||| |||||||||| ||||||||||| |
Sbjct 61 CCACTCCTATCTTCTCTCCTTTAGCTTCTTCTCCAGCAAGGAACCGTCTTTCTTGCTCTA 120
Query 121 AGATCCGTTTCGATTCGAAACATGGGAGAATTCTCAATTCTAATGGTGCCCAGAAGTTGA 180
|||||||||||| ||| ||| |||||| ||||||||||||| ||||||||||||||||||
Sbjct 121 AGATCCGTTTCGGTTCCAAAAATGGGAAAATTCTCAATTCTGATGGTGCCCAGAAGTTGA 180
Query 181 A--TCTC-----T-C--AAA----A----CAAAGATTTCTACAAATGGGTTCTTCCAAAG 222
| |||| | | ||| | |||||||||||||||||||||||||| ||||
Sbjct 181 ATCTCTCAAAATTCCGTAAACCCGATGGCCAAAGATTTCTACAAATGGGTTCTTCTAAAG 240
Query 223 AGATGACCTTTGAGAGAAAACTCTCAGTTCAAGCCATGGATGGTGCAGGAACAGGAAACC 282
|||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 241 AGATGAACTTTGAGAGAAAACTCTCAGTCCAAGCTATGGATGGTGCAGGAACAGGAAACA 300
Query 283 CATCAACTATCTCTCGTAACGTGTTTGCGATAAGTCACTTGTTGGTTTCACTTGGGATCA 342
||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 301 CATCAACGATCTCTCGTAACGTAATTGCGATAAGTCACTTGTTGGTATCACTTGGGATCA 360
Query 343 TACTTGCTGCTGACTATTTCTTGAAGCAGGCGTTTGTAGCTGCGTCTATTAAGTTCCCAA 402
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 TTCTTGCTGCAGACTATTTCTTGAAGCAGGCGTTTGTAGCAGCGTCTATTAAGTTCCCAA 420
Query 403 GTGCTTTGTTTGGGATGTTTTGTATCTTCTCTGTTCTTATGATATTTGATTCGGTTGTTC 462
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 421 GTGCTTTGTTTGGGATGTTCTGTATTTTCTCTGTTCTTATGATATTTGATTCGGTTGTTC 480
Query 463 CCGCTGCTGCAAATGGTTTGATGAATTTCTTCGAGCCTGCGTTTCTGTTTATACAGAGAT 522
| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 481 CTGCTGCTGCAAATGGTTTGATGAATTTCTTCGAGCCTGCGTTTCTGTTTATCCAAAGAT 540
Query 523 GGCTTCCTTTGTTCTATGTTCCTTCTCTTGTAGTTCTTCCTCTTTCTGTCAGAGATATTC 582
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 541 GGCTTCCTTTGTTCTATGTTCCTTCTCTTGTTGTTCTTCCTCTTTCTGTTAGAGATATTC 600
Query 583 CGGCTGCTTCCGGTGTCAAAATCTGCTACATTGTAGCCGGTGGATGGTTGGCGTCTCTTT 642
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 601 CGGCTGCTTCAGGTGTCAAAATCTGCTACATTGTAGCCGGTGGATGGTTGGCGTCACTTT 660
Query 643 GTGTAGCAGGGTTCACAGCAATTGCAGTGAGAAAAATGGTGAAAACCAAAATGACGGAAG 702
|||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 GTGTAGCAGGGTACACAGCTATTGCAGTGAGAAAAATGGTGAAAACCGAAATGACGGAAG 720
Query 703 CCGAACCTATGGCGAAGCCATCACCATTTTCAACACTTGAGCTATGGAGTTGGAGTGGAA 762
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CCGAGCCTATGGCAAAACCATCACCATTTTCAACACTTGAGCTATGGAGTTGGAGTGGAA 780
Query 763 TCTTTGTTGTGTCGTTTGTTGGTGCTCTGTTTTACCCTAATTCATTGGGGACAAGTGCAA 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TCTTTGTTGTGTCGTTTGTTGGTGCTCTGTTTTACCCTAATTCATTGGGGACAAGTGCAA 840
Query 823 GAACTTGTCTCCCTTTCCTTCTTTCTTCAACTGTGCTAGGTTACATTGTCGGTTCTGGGT 882
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 841 GAACTTCTCTCCCTTTCCTTCTTTCTTCAACTGTGCTAGGTTACATTGTAGGTTCTGGGT 900
Query 883 TGCCATCTTCTATCAAGAAAGTTTTCCATCCGATAATCTGTTGCGCGTTATCAGCAGTAC 942
||||||||||||| |||||||||||||||||||||||||| |||||| |||| |||||||
Sbjct 901 TGCCATCTTCTATTAAGAAAGTTTTCCATCCGATAATCTGCTGCGCGCTATCTGCAGTAC 960
Query 943 TCGCTGCTCTAGCTTTTGGGTATGCTTCAGGATCTGGACTTGATCCTGTTTTAGGAAACT 1002
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTGCTGCTCTAGCTTTTGGGTATGCTTCAGGATCTGGACTTGATCCTGTTTTAGGAAACT 1020
Query 1003 ACCTTACCAAAGTAGCATCAGATCCTGGTGCTGGTGACATATTAATGGGTTTTCTTGGCT 1062
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1021 ACCTTACCAAAGTAGCATCAGATCCTGGTGCTGGTGACATCTTAATGGGTTTTCTTGGCT 1080
Query 1063 CTGTCATTCTGTCTTTCGCTTTCTCCATGTTCAAACAAAGAAAGCTCGTGAAGAGGCACG 1122
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTGTCATTCTCTCTTTCGCTTTCTCCATGTTCAAACAAAGAAAGCTCGTGAAGAGGCACG 1140
Query 1123 CAGCTGAGATCTTCACATCTGTGATAGTTTCAACGGTATTCTCACTCTACTCCACTGCTC 1182
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1141 CAGCTGAGATCTTCACATCTGTGATAGTTTCAACGGTATTCTCGCTCTACTCCACTGCTC 1200
Query 1183 TTGTTGGACGTTTAGTTGGTTTAGAACCATCTTTAACGGTTTCAATCCTACCTCGCTGCA 1242
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1201 TTGTTGGACGTTTAGTCGGTTTAGAACCTTCTTTAACGGTTTCAATCCTACCTCGCTGCA 1260
Query 1243 TCACGGTTGCATTGGCCCTTAGCATTGTATCACTCTTTGAAGGGACCAATTCGTCTCTTA 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TCACGGTTGCATTGGCCCTTAGCATTGTATCACTCTTTGAAGGGACCAATTCGTCTCTTA 1320
Query 1303 CAGCAGCTGTAGTCGTTGTGACTGGTCTGATTGGAGCTAACTTTGTACACGTTGTTCTTG 1362
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1321 CAGCAGCTGTAGTCGTTGTGACTGGTCTGATTGGAGCTAACTTTGTACAAGTTGTTCTTG 1380
Query 1363 ACAAACTGCGTTTACGTGATCCAATTGCTCGGGGAATTGCAACTGCTTCAAGTGCTCATG 1422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 ACAAACTGCGTTTACGTGATCCAATTGCTCGGGGAATTGCAACTGCTTCAAGTGCTCATG 1440
Query 1423 GACTCGGAACAGCAGCTTTGTCGGCTAAGGAGCCAGAGGCACTTCCCTTCTGTGCAATAG 1482
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1441 GACTTGGAACAGCAGCTTTGTCGGCTAAGGAGCCAGAGGCTCTTCCCTTTTGTGCAATAG 1500
Query 1483 CTTATGCTCTCACCGGAATCTTCGGATCGTTACTGTGTTCTGTCCCTGCCGTCCGACAGA 1542
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1501 CTTATGCTCTTACCGGAATCTTCGGATCGTTACTGTGTTCTGTTCCTGCCGTCCGACAGA 1560
Query 1543 GTTTGCTTGCGGTCGTCGGCTGAGGATTGATGATGTGGCGTCACACAATTGATGGTCTCA 1602
||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1561 GTTTGCTAGCGGTCGTCGGCTGAGGATTGATGATGTGGCGAAACACGATTGATGGTCTCA 1620
Query 1603 AAGCCGGAGAGTTACTTAAAATATG-GTAGCAGTTTGCTTTGGATGTAAAATAAGCTTGT 1661
|||| || ||||||||||||||||| | ||||||||||||||||||| ||||||||||||
Sbjct 1621 AAGCTGGCGAGTTACTTAAAATATGAG-AGCAGTTTGCTTTGGATGTCAAATAAGCTTGT 1679
Query 1662 ATCAATGAAAAAGATGATGGAAAATGCttatttattttattttatatatataaatgtagt 1721
|| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct 1680 ATTAATGAAAAAGATGATGGAAAATGTTTATTTATTTTATTTTATATATGTAAATGTTGT 1739
Query 1722 gaaatttgtacaaaatatataaattttatttaAGAGTAGGATGCCCCAGCTTTCCAAATA 1781
|| |||||||||| ||| ||||||||||| || |||||||||| |||||||||||||| |
Sbjct 1740 GAGATTTGTACAACATACATAAATTTTATATAGGAGTAGGATGTCCCAGCTTTCCAAAAA 1799
Query 1782 TTTGGCACAAAGGT 1795
|||| |||||||||
Sbjct 1800 TTTGTCACAAAGGT 1813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88804764105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5