BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473392
Length=2682
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32090.1 | Symbols: | early-responsive to dehydration stres... 4204 0.0
> AT1G32090.1 | Symbols: | early-responsive to dehydration stress
protein (ERD4) | chr1:11540025-11544131 REVERSE LENGTH=2730
Length=2730
Score = 4204 bits (2276), Expect = 0.0
Identities = 2536/2659 (95%), Gaps = 27/2659 (1%)
Strand=Plus/Plus
Query 30 ATCATCAATGGCGACTCTACAAGACATAGGAGTCTCAGCTCTCTTCAACCTCTTCGGTGC 89
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 84 ATCAACAATGGCGACTCTACAAGACATAGGAGTCTCAGCTCTCATCAACCTCTTCGGTGC 143
Query 90 TTTCTTATTTCTCATCGCATTCGCTGTCTTAAGAATCCAACCCATCAACGACAGAGTCTA 149
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 144 TTTCTTATTTCTTATAGCATTCGCTGTCTTAAGAATCCAACCCATCAACGACAGAGTTTA 203
Query 150 CTTCCCTAAATGGTACCTCACCGGAGAAAGAAACAGTCCCCGGCGCTCCGACAGAACTCT 209
|||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 204 CTTCCCCAAATGGTATCTCACCGGAGAAAGAAACAGTCCTCGGCGCTCCGACAGAACTCT 263
Query 210 CGTCGGAAAATTCGTGAACCTTAACTACAAAACTTACTTCACTTTCCTTAATTGGATGCC 269
||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 264 CGTCGGAAAATTCGTAAACCTCAACTACAAGACTTACTTCACGTTCCTTAATTGGATGCC 323
Query 270 TCAAGCCATGAAAATGAGTGAATCAGAGATTATTCGTCATGCTGGTCTTGATTCTGCTAT 329
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 TCAAGCTATGAAAATGAGTGAATCAGAGATTATTCGTCATGCTGGTCTTGATTCTGCTAT 383
Query 330 CTTCCTTAGGATTTACACTCTCGGCTTGAAGATCTTTGCACCAGTGATGGTATTAGCTCT 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 384 CTTCCTTAGGATTTACACTCTCGGCTTGAAGATCTTTGCACCAGTGATGGTATTAGCGCT 443
Query 390 TGTTGTTCTTGTTCCAGTAAATGTATCAAGTGGAACACTTTTCTTCTTGAAGAAAGAACT 449
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 444 TGTTGTTCTTGTTCCAGTAAATGTATCAAGTGGAACACTTTTCTTCTTGAAGAAGGAACT 503
Query 450 TGTGGTCAGCAATATTGATAAGCTCTCTATATCAAATGTTCAGCCCAAATCTTCAAAGTT 509
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 504 TGTGGTCAGCAATATCGATAAGCTCTCTATATCCAATGTTCAGCCCAAATCTTCAAAGTT 563
Query 510 CTTCTTTCACATTGGAGTAGAGTACATTTTCACGTTCTGGGCATGTTTCATGCTCTACAG 569
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 CTTCTTTCATATTGCAGTAGAGTACATTTTCACGTTCTGGGCATGTTTCATGCTCTACAG 623
Query 570 AGAATACAATAATGTCGCTATTATGCGTCTGCAGTATTTAGCTTCACAGCGTAGGCGTCC 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 AGAATACAATAATGTCGCTATTATGCGTCTGCAGTATTTAGCTTCACAGCGTAGGCGTCC 683
Query 630 CGAACAGTTCACTGTTGTTGTTAGAAACGTTCCTGACATGCCCGGGCACTCGGTTCCCGA 689
||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 684 AGAACAGTTCACTGTTGTTGTTAGAAACGTCCCTGACATGCCTGGTCACTCGGTTCCCGA 743
Query 690 TACCGTGGATCAGTTCTTCAAGACGAATCACCCTGAGCATTATCTCTGTCATCAAGCTGT 749
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 744 TACCGTTGATCAGTTCTTTAAGACGAATCACCCTGAGCATTACCTCTGTCATCAAGCTGT 803
Query 750 TTATAATGCGAACACGTACGCAAAGCTGGTGAAGCAAAGAGAGAAGTTGCAACGTTGGTT 809
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 804 TTATAATGCGAACACTTACGCAAAGCTGGTGAAGCAAAGAGCGAAGTTGCAACGTTGGTT 863
Query 810 TGATTATTATGTGCTGAAGCATCAACGTAATCCGCATAAGCAGCCTACATGCAGAACAGG 869
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 864 TGACTATTATGTGCTGAAGCATCAACGTAATCCGCATAAGCAGCCTACTTGCAGAACAGG 923
Query 870 GTTTCTTGGTCTATGGGGTAAGAAGGTTGATTCCATTGAGTACTACAAACAACAAATCAA 929
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 924 TTTTCTTGGTCTATGGGGTAAGAGGGTTGATTCCATTGAGTACTACAAGCAACAAATCAA 983
Query 930 GGAGTTTGACCACAATATGTCTTTGGAGCGCCAAAAAGTTCTCAAGGACTCCAAACTAAT 989
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 984 GGAGTTTGACCACAATATGTCTTTGGAGCGTCAAAAAGTTCTCAAGGACTCCAAGCTAAT 1043
Query 990 GCTTCCTGTTGCATTTGTGTCGTTTGATTCACGATGGGGTGCTGCTGTTTGTGCACAGAC 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 GCTTCCTGTTGCATTTGTGTCGTTTGATTCACGATGGGGTGCTGCTGTTTGTGCACAGAC 1103
Query 1050 GCAGCAGAGCAAGAATCCGACATTATGGTTAACGAGTAGTGCTCCAGAGCCTCGGGATAT 1109
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1104 GCAGCAGAGCAAGAATCCGACATTATGGTTAACGAGTAGTGCTCCAGAGCCTCGTGATAT 1163
Query 1110 TTATTGGCAAAACCTTGCTATACCTTTTATCTCTTTGACCATCCGGAAACTCGTAATTGG 1169
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1164 CTATTGGCAAAACCTTGCTATACCTTTTATCTCTTTAACCATCCGGAAACTCGTAATTGG 1223
Query 1170 TGTCTCAGTCTTTGCCTTGGTCTTTTTCTACATGATTCCAATTGCTTTTGTCCAATCTCT 1229
||||||||||||||||||||||||||||||||||||||| || || || || ||||||||
Sbjct 1224 TGTCTCAGTCTTTGCCTTGGTCTTTTTCTACATGATTCCTATCGCCTTCGTGCAATCTCT 1283
Query 1230 TGCCAATTTAGAAGGTCTTGACAGAGTTGCACCTTTCCTCAGACCTGTTACTAGATTGGA 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 TGCCAATTTAGAAGGTCTTGACAGAGTTGCACCTTTCCTCAGACCTGTTACTAGATTGGA 1343
Query 1290 TTTCATCAAGTCATTCTTACAGGGTTTTCTCCCCGGTCTTGCTCTGAAGATTTTCTTGTG 1349
||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 1344 TTTCATCAAGTCATTCTTACAGGGTTTCCTCCCCGGTCTTGCGCTGAAAATTTTCTTGTG 1403
Query 1350 GATTCTCCCGA-GTGTTCTGCTGATTATGTCGAAGATTGAGGGATACATCGCTTTATCGA 1408
||||||||| | | |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1404 GATTCTCCCTACG-GTTCTGCTAATTATGTCGAAGATTGAGGGATACATCGCTTTATCAA 1462
Query 1409 CCCTTGAGCGTAGAGCAGCCGCAAAGTACTATTACTTCATGTTAGTAAATGTATTCTTGG 1468
||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 1463 CCCTTGAGCGTAGAGCAGCAGCAAAGTACTATTACTTCATGTTAGTTAATGTGTTCTTGG 1522
Query 1469 GAAGTATCATTGCCGGAACCGCGTTTGAGCAGTTGGACTCTTTCCTTCACCAATCACCAA 1528
||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1523 GAAGTATCATTGCTGGAACCGCGTTTGAGCAGCTGCACTCTTTCCTTCACCAATCACCAT 1582
Query 1529 CTCAGATTCCTCGAACCATTGGGGTCTCAATACCGATGAAAGCTACGTTCTTTATCACAT 1588
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1583 CTCAGATTCCTCGAACCATTGGGGTCTCCATACCGATGAAAGCTACATTCTTTATCACAT 1642
Query 1589 ATATAATGGTTGACGGGTGGGCTGGGATTGCAGGTGAGATTCTCCGGTTAAAGCCCCTCG 1648
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 ACATAATGGTTGACGGATGGGCTGGGATTGCAGGTGAGATTCTCCGGTTAAAGCCCCTCG 1702
Query 1649 TGATTTTCCACTTGAAGAACATGTTTCTTGTGAAGACTGAAGAAGATAGAGTGAGAGCAA 1708
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1703 TGATTTTCCACTTGAAGAACATGTTTATTGTGAAGACTGAAGAAGATAGAGTGAGAGCAA 1762
Query 1709 TGGACCCTGGCTTTGTCGATTTCAAGGAGACTCTCCCATCTCTCCAGCTCTACTTCCTCT 1768
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1763 TGGACCCTGGTTTTGTCGATTTCAAGGAGACTATCCCATCTCTCCAGCTCTACTTCCTCT 1822
Query 1769 TGGGAATTGTCTACACCGCTGTTACTCCCATTCTTCTTCCCTTCAT-CTGCATATTCTTT 1827
|||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 1823 TGGGAATTGTCTACACTGCTGTTACTCCCATTCTTCTTCCTTTCATTCT-CATATTCTTT 1881
Query 1828 GCCTTTGCTTACTTCGTCTATCGCCATCAGATAATCAATGTTTACAACCAACAATACGAG 1887
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1882 GCCTTTGCTTACTTGGTCTATCGCCATCAGATAATCAATGTTTACAACCAACAATACGAG 1941
Query 1888 AGTTGTGGAGCGTTTTGGCCACACGTTCATGGCCGGATAATCGCGAGCTTGTTGATATCT 1947
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1942 AGTTGTGGAGCGTTTTGGCCGCACGTTCATGGCCGGATAATCGCAAGCTTGTTGATATCT 2001
Query 1948 CAGCTTCTGCTTATGGGACTTTTGGCTTCTAAAAAAGCAGCTGACTCAACGCCATTGCTT 2007
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 2002 CAGCTTCTGCTAATGGGACTTTTGGCTTCTAAAAAGGCAGCTGACTCAACTCCATTGCTT 2061
Query 2008 ATCATCTTACCCATTCTCACACTTTCTTTCCACAAGTATTGCAAACACCGCTTCGAACCT 2067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2062 ATCATCTTACCCATTCTCACACTTTCTTTCCACAAGTATTGCAAACACCGCTTCGAACCT 2121
Query 2068 GCCTTCCGACAATACCCTCTTGAGGAAGCAATGGCGAAAGACAAGTTGGAGAAGGAAACA 2127
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2122 GCCTTTCGACAATACCCTCTTGAGGAAGCAATGGCGAAAGACAAGTTAGAGAAGGAAACA 2181
Query 2128 GAACCGGAGTTGAACATGAAAGCGGATCTTGCAGATGCTTACTTGCATCCTATTTTCCAT 2187
||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 2182 GAACCGGAGTTGAACATGAAAGCAGATCTTGCAGATGCTTACTTGCACCCAATTTTCCAT 2241
Query 2188 TCATTCGAGAAAGAAGTAGAATTatcatcatcatcatcatcaGAAAAAGAGACTCACCAA 2247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2242 TCATTCGAGAAAGAAGTAGAATTATCATCATCATCATCATCAGAAAAAGAGACTCACCAA 2301
Query 2248 GAAGAGACACCAGAGGTAAGAGTCGACAAACATGAAACACAGTCGTCTAGTCCTGTGACC 2307
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2302 GAAGAGACACCAGAGGTAAGAGTGGACAAACATGAAACACAGTCGTCTAGTCCTGTGACA 2361
Query 2308 GAGCTCGATACTCCTTCCCATCACCATTATGTCTACAATTCCACTTCCCCTTCTTCTCAC 2367
||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2362 GAGCTCGGTACTTCTTCCCATCACCATCATGTCTACAATTCCACTTCCCCTTCTTCTCAC 2421
Query 2368 TACACTTCAGCTTATGAGCAGTCATCATCTCAGTATGAATATCACTACAATACTCATCAG 2427
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2422 TACGCTTCAGCTTATGAGCAGTCATCGTCTCAGTATGAATATCACTACAATACTCATCAG 2481
Query 2428 TACGAGGATCATGAGTACCGTTACAAGTGATCTCTAGATGGCaa-aaaaaGAAAG-ACTG 2485
|||||||| ||||||||||||||||| ||||||||||| | || ||||| | | | |
Sbjct 2482 TACGAGGAGCATGAGTACCGTTACAATTGATCTCTAGACAG-AAGAAAAATAT-GTAATC 2539
Query 2486 TCTTATGAGTGTCATAACTAAAGCTCATGTCCTTTTGGTCTAGGTTTAGGTTATTTGTTA 2545
||||||||||||||||||||||| | | || ||||||||||||||||||||||||||||
Sbjct 2540 TCTTATGAGTGTCATAACTAAAGGT--T-TC-TTTTGGTCTAGGTTTAGGTTATTTGTTA 2595
Query 2546 GCTGACTTTGGATTTGGTTTTGGTTTTGA-GGTTAGGAAATTGGTGTTAGTGTCATTTCA 2604
||||||||||| ||| | | |||| | ||||||||||||||||||||||||||| ||
Sbjct 2596 GCTGACTTTGG-TTTCG----G-TTTTAAAGGTTAGGAAATTGGTGTTAGTGTCATT-CA 2648
Query 2605 CTTGTATGGAAATATATTCGAAGATT-AATTTATTGTCATCTGGTTTCTTCAAGCCTTTT 2663
|||||||| ||||||||||||||||| ||||||||||||||| || | |||||| ||
Sbjct 2649 CTTGTATGAAAATATATTCGAAGATTTAATTTATTGTCATCT--TT-C---AAGCCTATT 2702
Query 2664 GTAATTGTAAAATTTGGTT 2682
|||||||||||||||||||
Sbjct 2703 GTAATTGTAAAATTTGGTT 2721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133193233665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5